EsuBft1056_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1056_3a-0001
Unique NameEsuBft1056_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_427contigScaffold_427:273283..278060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog6500.XP_005092035.1
ProteomeIdEsuBft1056_3
Protein domainsSSF56672
Protein domainsPTHR19446
Protein domainsIPR000477
Ownerapollo_admin@sb-roscoff.fr
Noteline-1 retrotransposable element orf2 protein os:homo sapiens pe:1 sv:1 [Automatic annotation]
Nb exon4
Max annot lvl33208|Metazoa
Length1006
Evalue4.08e-21
EggNOG OGsKOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3D94V@33213|Bilateria
Date last modified2016-06-15
Date creation2016-06-15
DescriptionRibonuclease H protein
COG categoryS
Cross References
External references for this mRNA
DatabaseAccession
EC2.7.7.49
EC3.1.21.4
GO0003964
GO0009036
GO0032199
GO0000737
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_3aEsuBft1056_3aEctocarpus subulatus male Bft15bgeneScaffold_427 273283..278060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_3a-0001EsuBft1056_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_427 273484..277978 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_3a-0001-exonagat-exon-24488Ectocarpus subulatus male Bft15bexonScaffold_427 273283..273738 +
EsuBft1056_3a-0001-exonEsuBft1056_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_427 274306..274474 +
EsuBft1056_3a-0001-exonagat-exon-24490Ectocarpus subulatus male Bft15bexonScaffold_427 276398..276402 +
EsuBft1056_3a-0001-exonagat-exon-24489Ectocarpus subulatus male Bft15bexonScaffold_427 277685..278060 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_3a-0001-exonagat-five_prime_utr-334Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_427 273283..273483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_3a-0001-cdsEsuBft1056_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_427 273484..273738 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1056_3a-0001-exonagat-three_prime_utr-541Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_427 277979..278060 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1056_3a-0001 ID=EsuBft1056_3a-0001|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1006bp|location=Sequence derived from alignment at Scaffold_427:273283..278060+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTTCCTGCAGCTCGGCGCTTCATCGGCAGCCCAAGACCACGAAGGGAAT
TGAATGTGCGTTCGGAACTCGGAACCGTGATGAGGCACTGGAGGCGGTCG
TGGACTTATTGCGACAGTGCAGAGCGGGCAATACAGCCATCTCTGACAAC
GAGTCATCCACGATCAGGCTCCCGCGTGTAGATTTCTGGGTCTCGGCCGG
GATGGGAATGGTAAGCTTGGCAAGACGAGGTCGGAGTTGTATGCTCCCGG
CTCCGGCTGCCTGGACGTGGCGTCGTCGTCGTTGGCTGGTCACAGACTTC
GATCGAGAGCTGTCGAGATCACGAGGAAAACCGTTAGCTACTGACAAGCG
CTGTCTCGGAAATGTTGGACGGTGGATCTTCACAAGCGCGGGTGCAGCTG
AAGAATGTTGGGAGTGTTGGTGGCATGCCAAGAGGATGGGAGAGGGCTTG
AGAGAGAACTCTCCGGCCAGAAGTGTTGCGTGTCGAAGTCAACCGGCTAT
GACGCACAGCAATAATAGGCGCCCATACCAGCCAGGCGTACGAGCTTTTT
TGCCGATGGGAAGAAGCGTTGATTTTGGTGGAGCACCTCTCTACTTCCGG
GCGGGTGAGCGGCCTGCTACGCAGGTAGAGGAGCTGGGGGGGCGGAGAAA
GAAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATT
CGGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCC
GCGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCG
GGTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGG
GCGTGCGACAAGGATGTGTGCTATCCCCACTGCTATTCAACAACTTCTTC
GCCGAGGCCCTCGAGGTCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNN
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protein sequence of EsuBft1056_3a-0001

>EsuBft1056_3 ID=EsuBft1056_3|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=241bp
MGMVSLARRGRSCMLPAPAAWTWRRRRWLVTDFDRELSRSRGKPLATDKR
CLGNVGRWIFTSAGAAEECWECWWHAKRMGEGLRENSPARSVACRSQPAM
THSNNRRPYQPGVRAFLPMGRSVDFGGAPLYFRAGERPATQVEELGGRRK
KIPLYMCFVDLNKAYDSVDREMLWKVLARAGIPAKLIEVIRQFHDGMRAR
VRMDDGELSDWFFVTQGVRQGCVLSPLLFNNFFAEALEVVX
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mRNA from alignment at Scaffold_427:273283..278060+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1056_3a-0001 ID=EsuBft1056_3a-0001|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4778bp|location=Sequence derived from alignment at Scaffold_427:273283..278060+ (Ectocarpus subulatus male Bft15b)
CCTTCCTGCAGCTCGGCGCTTCATCGGCAGCCCAAGACCACGAAGGGAAT
TGAATGTGCGTTCGGAACTCGGAACCGTGATGAGGCACTGGAGGCGGTCG
TGGACTTATTGCGACAGTGCAGAGCGGGCAATACAGCCATCTCTGACAAC
GAGTCATCCACGATCAGGCTCCCGCGTGTAGATTTCTGGGTCTCGGCCGG
GATGGGAATGGTAAGCTTGGCAAGACGAGGTCGGAGTTGTATGCTCCCGG
CTCCGGCTGCCTGGACGTGGCGTCGTCGTCGTTGGCTGGTCACAGACTTC
GATCGAGAGCTGTCGAGATCACGAGGAAAACCGTTAGCTACTGACAAGCG
CTGTCTCGGAAATGTTGGACGGTGGATCTTCACAAGCGCGGGTGCAGCTG
AAGAATGTTGGGAGTGTTGGTGGCATGCCAAGAGGATGGGAGAGGGCTTG
AGAGAGGTATGGTGATCTTGCTACATAGCAGGACGTTCTTCGGACGGTGA
TGAGGCTTGCTGTGAAAAACAATCAATTCGGAACCGTATGCATATGTCGC
GACTTATTGTTTGGAGAGCTATTTTGCGTTGCACTGATTCTGTACTCAAT
AAGATCGTGTTATCTTTCCCATTCGCACTGTGTGCAAGGTCAGTGTGTCT
TGCTGCCGTTGTGAAGCAAACGGCCCGCAGCGCGCTTGGGTTTGGCGTAG
TCGCCCTCGTCATGAAAATTCGTTGAGACACATTCCAACCTTGAGCGTAC
CACACCGTTCCCGGCCCGTTCATTCTACTTCGGTGTACGCAACCCTTGTC
TCTTCGGCAGTGTTCCACTACCTGAAATCGGGCTCCAGGGTCTGAAAGTG
TGCATGCACGTGCCTGTCGCATGAGAGCACCTCCTTTGGTTGTCTGTGAG
TGGGGACCGATGTTGACGAAGTTTCGAAATATTTGCCAGCAAATCTTACC
GAGATGCTGGTTCTCACCAGGTGACACACGTACCTTGTGCTCTTGACTCC
CATTATTACTTTTGCCAACCCAGAACTCTCCGGCCAGAAGTGTTGCGTGT
CGAAGTCAACCGGCTATGACGCACAGCAATAATAGGCGCCCATACCAGCC
AGGCGTACGAGCTTTTTTGCCGATGGGAAGAAGCGTTGATTTTGGTGGAG
CACCTCTCTACTTCCGGGCGGGTGAGCGGCCTGCTACGCAGGGTAAGAAG
TGGTGCTCACCAGGGCCTGGCACCAAATCAAAGTTGTACATGAAATACGT
TAATTACGGGGGGGGACTGGCCTTCACTTTGTTTCTTCTCACCGCCTAGT
ATGTTCGGGTCTATGGGAAAATGTCTATTATAAAAACGAACGGTGTTCCA
GAAACTGCTGATGCTGTGGGTGGACCCTTTGGTACTTTGCCGAACTCATG
ATGCAGACAAGACCCGGATTCTGACGGATGGGCTACATGTGTTCGTCGGG
AACGGAGATGAACTTGGCTCTCTCTGCGAGCGATGAATCAGACGTGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCCCCCCCCCCCCCCCCCCCTCCCATGGTCACTTTTTTGTTG
TGCTTGAGAACAACGCGGTAGCTGTTTTGTTGTGCATAAGCAAGAAGGGA
TGGTATCATCGAGATATCTGACCGTAGCAGGGCCGGTCGGTGTGTTCGTT
GACGATGTAGTAGGTGGTTGGGGGTGCTCGGCAGGAGAGTACTGATCTAT
GGGGTCTCCGTGGTGTTACGCGGTAGATCGTTTGGATGCGATGAGCATGA
CGCACGGGGCCCTTCTTGTCTTGCCTCGCTCATGTCTGCGATTCGTCAGC
AATGAAGAGCTTGTTGGGTCAACCTTCTTTCTTTTCCGGCCTTTGACGAA
AAGCTTGCTAGCTGCTGCACCCAAATATCCCATCAACACGGGAAAAAAAC
ATGATCCGTCAGTCAGTCCACTCGACACCGTAAACATCCCAAAACTTGAG
GGGCATCTGCCTCTCTCTGGCGTTGGACGTCCCACGGATACGTCATGTCC
ATGGACATTTCCACGGTCATCTACGGGAGACTTCCCCACGTATGGCGGCC
ACGGATGGCGGCTAAATGTCCACGGGCGTGCTTGCGCGGAGATATCCACG
AACGAACGCGTCCGCTCACAATTTGTCCGTGGACGCCTTAATAAACAAGA
AAAACTCGGGGGCACGCTCTACTTATAATAGTCACCAAGAGACAAACATG
CATACATCCACAACAGTCAGTTATAGATGGACGGCCACGGACGTCTTCAT
AAGCGTTCATGGACGGACGCCCATTGACAACCACGGACTGACATGTCTGT
GGATATCCATCCGTTCAGGACGGACGTGGCCGTTGATGTCCATGGACGGA
CACGTCCACCAAAGGGTCAGATAGTGTTACGTACCATAGTAATAGTTGAT
GACCCGTTCAGTGATACCCTATGCCCGATCACGAGACGACAGAGTTACAA
TCATTGTGGCACGTATTTCACTGTTGTACATAAATGGACACATCAATTGT
GAGCCTTGCTCAAAGTAGAGGTAATAGATGTTTATGGGTGTGTCCAAGTA
TTGTAAGTGGGTCGGTGGATGTCAAAAGAGTCACAAGCAGCAGCAGCAGT
GTGGTGTCACCCAAGATCCTTCTGTGAAGAAGACCACGCAAGCGACTGGT
CAAACCAGCCGACTCCAACTGCTGAGAACACCTCCACCACAGCCTAGTTT
CCTCGTTGGTATGCCGACCACACTCATCAGCTCAAACTCTCGGTCTGGTC
GTCCGACCGCCGAGTCCTGTGGTCTCGGTGGGGTGAAGTGTCAAGTCTGG
GTTGTTATTGTGGTTGTTGTTGTTGTTGTTGTCTTCACATTAGAACCGTT
CCGGTCTCCGCTCAGTACCTTCTAATGTCCGTACTGGTCCAACTGACGCG
GACGCCTTCCGTGGTCACAATCTAACTGCCCCAAAGGCGGTACATACAAC
AGAAGTCCTCCCGCTCGCGATTTGTTTTTCTACCCAAACGAACAAGGAAG
AAAAAGAAAAAGGGTAGTCTTTCTGTGATGCTATGGTTACTTTCTAAAAA
AGAAAACAACTAAGGGAAAAGGTTCCTAACCGAGGTACAGACGATCGACC
CCGGTCAAAACAGGGATGAAATAAATGTAAAAATGATCCGGTTTGGATCA
GCCCTGAGGTGAGTAAGGAGGAGGTGTAATAGTATATATTACCCCTGTCT
GAGTGATGAGTAGTTGAGTTTTCTTGACATTGAACTCGTGTCAGTTGCTT
ACATTCCCGATATCTACCAGAGAGGAAGACTCGGTCCGTAGTCACAAAAT
ACTAGATAGAGCCATGAAAAGAAGATGATCTAAAGAACACGCACACTATT
ATTATTGTTACCAGAAAGAATGGCACAAGCCCGAAGAGGTACACCTACCT
ACTAGGTCCCGAGAGGCTGTTGGAAATGCCTACGCATATCCTGTCTTAGT
CAATGTTTAGTAGTACTGCTGATGTAGACGAATGACATATGTGTTATCTA
TGTATCGGTTGGAACGTAACGTATGCGGAAGAACTAAAAGCTGTACGTAG
CCCGTAGCTCGTTCTGTCGTTCGGTGCACGACCCCACTCTTTGGGATCTC
TCTCGGTGATCTATCGGACTGTCTGGATACTTTAGCTGTCCTTGTCGTAC
CTTGGATGCTGCTGGCATACTGCCTGGACTACAACCGTCTGTCGGGTGTA
TCTGTCTGTGTTGGCCACGTAGGCGCCGTGTTTACAACATCTCTCCATCT
TTTTCTGCACTGAAGTACCGTCGACATGCTGTTCGTCGTGCGCCGCCTCC
AGGAGCTGGGGGGGCGGAGAAAGAAAATACCGCTCTACATGTGCTTCGTC
GACTTGAACAAGGCGTATGATTCGGTGGACCGAGAGATGCTATGGAAGGT
GCTGGCCAGGGCCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAAT
TCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCG
GACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCC
ACTGCTATTCAACAACTTCTTCGCCGAGGCCCTCGAGGTCGTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_427:273283..278060+

>EsuBft1056_3a-0001 ID=EsuBft1056_3a-0001|Name=EsuBft1056_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=723bp|location=Sequence derived from alignment at Scaffold_427:273283..278060+ (Ectocarpus subulatus male Bft15b)
ATGGGAATGGTAAGCTTGGCAAGACGAGGTCGGAGTTGTATGCTCCCGGC
TCCGGCTGCCTGGACGTGGCGTCGTCGTCGTTGGCTGGTCACAGACTTCG
ATCGAGAGCTGTCGAGATCACGAGGAAAACCGTTAGCTACTGACAAGCGC
TGTCTCGGAAATGTTGGACGGTGGATCTTCACAAGCGCGGGTGCAGCTGA
AGAATGTTGGGAGTGTTGGTGGCATGCCAAGAGGATGGGAGAGGGCTTGA
GAGAGAACTCTCCGGCCAGAAGTGTTGCGTGTCGAAGTCAACCGGCTATG
ACGCACAGCAATAATAGGCGCCCATACCAGCCAGGCGTACGAGCTTTTTT
GCCGATGGGAAGAAGCGTTGATTTTGGTGGAGCACCTCTCTACTTCCGGG
CGGGTGAGCGGCCTGCTACGCAGGTAGAGGAGCTGGGGGGGCGGAGAAAG
AAAATACCGCTCTACATGTGCTTCGTCGACTTGAACAAGGCGTATGATTC
GGTGGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGGCCGGGATTCCCG
CGAAGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGG
GTGCGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGG
CGTGCGACAAGGATGTGTGCTATCCCCACTGCTATTCAACAACTTCTTCG
CCGAGGCCCTCGAGGTCGTNNNN
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