EsuBft934_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft934_3a-0001
Unique NameEsuBft934_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_130contigScaffold_130:375649..380465 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7FTQ7
ProteomeIdEsuBft934_3
Protein domainsTMhelix
Protein domainsCYTOPLASMIC_DOMAIN
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsPTHR10877
Protein domainsIPR013122
Protein domainsTRANSMEMBRANE
Ownerapollo_admin@sb-roscoff.fr
Notepolycystin-2 os:oryzias latipes gn:pkd2 pe:1 sv:2 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length1933
Hectar predicted targeting categorysignal anchor
Evalue1.69e-77
EggNOG OGsKOG3599@1|root,KOG3599@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Descriptiondetection of mechanical stimulus
COG categoryE
Cross References
External references for this mRNA
DatabaseAccession
GO0045180
GO0031941
GO0072218
GO0031587
GO0072219
GO0035502
GO0072214
GO0051219
GO0046872
GO0072177
GO0005245
GO0035904
GO0005248
GO0072372
GO0005887
GO0045944
GO0021510
GO0090279
GO0021915
GO0016043
GO0050915
GO0042994
GO0045429
GO0071910
GO0072208
GO2000134
GO0071556
GO0071158
GO0048763
GO0072686
GO0031659
GO0071470
GO0070062
GO0072284
GO0009925
GO0043398
GO0036064
GO0044325
GO0035725
GO0072235
GO0071464
GO0005102
GO0005267
GO0050982
GO0072075
GO0005227
GO0003127
GO0051393
GO0001947
GO0071458
GO0051209
GO0071498
GO0030027
GO0042803
GO0001658
GO0061441
GO0042127
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft934_3aEsuBft934_3aEctocarpus subulatus male Bft15bgeneScaffold_130 375649..380465 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft934_3a-0001EsuBft934_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_130 376682..380465 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft934_3a-0001-exonEsuBft934_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_130 375649..376954 -
EsuBft934_3a-0001-exonagat-exon-42744Ectocarpus subulatus male Bft15bexonScaffold_130 377831..378050 -
EsuBft934_3a-0001-exonagat-exon-42745Ectocarpus subulatus male Bft15bexonScaffold_130 378766..378845 -
EsuBft934_3a-0001-exonagat-exon-42746Ectocarpus subulatus male Bft15bexonScaffold_130 379548..379781 -
EsuBft934_3a-0001-exonagat-exon-42747Ectocarpus subulatus male Bft15bexonScaffold_130 380373..380465 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft934_3a-0001-exonagat-three_prime_utr-23212Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_130 375649..376681 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft934_3a-0001-cdsEsuBft934_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_130 376682..376954 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft934_3a-0001 ID=EsuBft934_3a-0001|Name=EsuBft934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1933bp|location=Sequence derived from alignment at Scaffold_130:375649..380465- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCACGTTCCACAAGCGCATGAGCATCGTCACCGACACCCTGAGCAG
AGCGAGCACCCATCTCAACCATTTCCTGTTCGTGTTTTTCCTGGTAATCC
TCGCGTTTGCCGCCCTCACGTGGCTCCTCGTCGGGTCCAGCACGAAAGAG
TTTTCCACCCTGGAGGATGCGTGGCGGAGCGTGATCCGCATCTCCCTCGG
GGAGTCCGAGAATTTCTACCCGCAGATCTTGGATGCGCAGCCCACGGTCG
GACCGGTGGTGGTGGTGCTGTACCAGGTCCTGGGCGTGGTGTTGCTGCTG
AACGTGGTGATCGCTATCCTTCTCGAGGCCTACCGAGGAGTTGCAAGTGG
TATGCACGGCGAGGACACCATATTCCAGTCGTTCATCGCCTTCGTCGGCA
TGTCTTGGTGTTCGCTGACAACAAGAATACGCTGGGCCACCGCCTGCATC
CGGTGGCGTCTGGGTGGACGAAGAAACACGTCGCGTCCGTCGCTCAAGAT
ATTCTTGCAGGGCTCTACCGGGGTATGCGGGGTGGATGGGCGGCCTGTGG
TGATGGTTCGGAGACCGCCAGAGAGCTCGACGATACTGGGAAGGCAGCTG
TCTTTCAACTGCCCGCGGTACATTACGGTAACCGAAATGCAGGCACTGAT
CGAAGCCACCCCGGTCCCGGCTCGCGTGGCCGACCGGTTGGTGAGGAAGA
TCGTCCACGATTGGGTTTTCCGAAGCGACGAAAGGATCACCGGAGGCAGT
TTTCAGTCGCCGTCGTCCTCGGGAGAGTACGGCAACGGCACCGGTGGCGG
CAACGGCGGTGTGACGGCAACGAACCTCAGGAGAACGTCCAGCACTGACT
CGTCACGGCCAATGCAGCGGCGGCCGTCGTCGTCTACCGCCTCCCGATAG
ACAGCGTATTGAGGGCGTTTCCTTTTCCAGGGTGTCCCAAGACTATGGCA
TGGACAAGGTCGTGTCGGGATATCCTCACACAGGACGGGGATCAGATGTA
TGTTTCATCGCCGGGTATTGCCGCGTGTTGACTTTTCAGTGATGTTCTCC
AGGAGGACTACCCTTTCTATCGTCCGTCTAGCATCCTGTGGCACCTCTGC
ATGATGGGCTTTTAGAAGGTGTTGGTCATGGCAATAGCGTTCGGTCCGGC
TCAGTGTGCGCCAGGCTAGGCGGTCTAGGAACGGAAACGGAGCCGACTCG
GCGTGTACAGGTTTTAAGCGATTCTTCTCTTGTTCACGCTTTGTTGTGGT
TTATTTGTTCGTCCGTTCTCCGGTTCAATCCTTAGAATACCGCTAAAGCT
GGCGCGCTGAAGATGTCTCCTTATTCATAATCGTCACAGCAGGGGGCGCT
GCGGGTGATCACGCTGTTGTTTATCGTACTGTTGAGAGAGGGGGATTTGC
ATGTGAAGCGTTGGAGCTTCATAGTAGTTGAAGGCGTCCTGCGAGTCGGC
GTCGTTTCCCTATCAAAGTTTATTGTGTTGTTGTTGGTGTGTTGCGTGCG
TTCCCGATGTTTGGCGCCTCCCGGCGGCTTGCAACGACGAACAACCGGCA
ACAAAGATCAAACGGGGCGGCGGTTTTCCCGGGGATAATGGCAATATTTT
GATTTTTTTCTCACCTGTGTCATGTGCTTGTATTAGATTCTGACACCATT
CGAAATGTATGCTTCGTCTCGAGCCCCTTGCGTATGTGTATCGCCGGCGT
GCACAAGATTCGGATATTATCAATATCAAGCATATATGAGGCGGTCAGCG
TACGATATTATGGTACATGTACTGTAGGAGTTGTCAACTGCGGGTTACAG
TTTGTTGCTCTGTCTCTGTCTCGGGGGCATTTTCGTATGATGAACGACGC
TCGCATGCGTACTCTAGAGCTTAAGAGACATGCAGGCACGAACGTGCAGC
GTTTCAACAGTGATATTTTCGACCTTTCATTGT
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protein sequence of EsuBft934_3a-0001

>EsuBft934_3 ID=EsuBft934_3|Name=EsuBft934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=299bp
MLTFHKRMSIVTDTLSRASTHLNHFLFVFFLVILAFAALTWLLVGSSTKE
FSTLEDAWRSVIRISLGESENFYPQILDAQPTVGPVVVVLYQVLGVVLLL
NVVIAILLEAYRGVASGMHGEDTIFQSFIAFVGMSWCSLTTRIRWATACI
RWRLGGRRNTSRPSLKIFLQGSTGVCGVDGRPVVMVRRPPESSTILGRQL
SFNCPRYITVTEMQALIEATPVPARVADRLVRKIVHDWVFRSDERITGGS
FQSPSSSGEYGNGTGGGNGGVTATNLRRTSSTDSSRPMQRRPSSSTASR
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mRNA from alignment at Scaffold_130:375649..380465-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft934_3a-0001 ID=EsuBft934_3a-0001|Name=EsuBft934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=4817bp|location=Sequence derived from alignment at Scaffold_130:375649..380465- (Ectocarpus subulatus male Bft15b)
ATGCTCACGTTCCACAAGCGCATGAGCATCGTCACCGACACCCTGAGCAG
AGCGAGCACCCATCTCAACCATTTCCTGTTCGTGTTTTTCCTGGTAAGGC
TGACACAGTTGCCGGACAAGAGGTGTCTTGGGGTACTGGTGCTGGTGGTA
GTACTGACGACGCTGTTGGCGGCGAATTGTACGTAGTAGTCAGTGGTAGT
ATAATAGTTCGCCTCTCGGTGCGGTCGCGTTTTAGCCCGCTTTCATTGTT
GACCGACTTGAAGAATGGACAGTTTTTCCTGTTGAAGCCGTTGCTTGTAT
TGAAGTGTGCACAATGACGAATGCAATCACACAGTGGTGGAGTATACATA
TTTATCGGACGACTACAATATGCATTGCCTGCGTTACCGGCGTAGTGCCT
TTTGCCACCAACACGCTTGGCAGGTTTCTCGCTGCTCGCCGTGTCCACCA
GGCAAGCACGGACTTAGTTTCGAATCGTGTGTAGTCGGACGTTGACGAAC
CAACCTTCGAACGTGTGGACGGGCGTGTTGTACCGACCAAAGCGCCAGCT
GATGTCAATGTTTCGGCGAGTGGACGAACAACACGTGCATACACCTCCCG
CGAAGAAGGCCATATGAGAGCGCAACTAAAGTAAGAAACAGACTGGGATG
AAACCTGCTTCATTTTTCCTCTCTCTTTCCCCAGGTAATCCTCGCGTTTG
CCGCCCTCACGTGGCTCCTCGTCGGGTCCAGCACGAAAGAGTTTTCCACC
CTGGAGGATGCGTGGCGGAGCGTGATCCGCATCTCCCTCGGGGAGTCCGA
GAATTTCTACCCGCAGATCTTGGATGCGCAGCCCACGGTCGGACCGGTGG
TGGTGGTGCTGTACCAGGTCCTGGGCGTGGTGTTGCTGCTGAACGTGGTG
ATCGCTATCCTTCTCGAGGTATGGTGCTTTGTACAGTTGTTGTTGTTGGT
ATTGGTCGTGGTGTTAAAATTTTTTGTCTTTTGCTGCTGTAGTTGTTGGC
TAAGAGTTGCTCGTCCTCGCGTTTCGCAAGTTGTGTTGCTGACGAAGACC
TTGCGTGCGGCTTCGGTATGTGATGGCACCACAGCTGGTGTTTCTACCGC
CAGGTTGTGGCAGTGGTGCATGGATCATGGTGCTTCGGTGGCACTGAATG
TGGGTGGATAGTGTGGGCACGGGTTATCATCCCGAAAGTGATGGATCGTT
CTGTCGCCGATGCTGCACGTCTTGTTCCGTATTCTTGAGGGGAAGCTCCG
CGGCACCAAGGAGAAGAATCAACACATTTTTTTTCGAACACAGTCGTCCG
ACCCCGCCCATGCGAGGTATTACTTTTCTGCAAAAACCCAAGGAAACAAA
GTAAATCGCCCTGCCCGCACTCCAACACAAGCCGGAGACACCTATGCTGC
AGCACTACCAACGTGATGAGTCTCAAAGAACCTGTGCTCGGGCCCTAACG
ATGCCGGGAATGGTTCGTCTTCTGGGGTATCCTCCGACCCTTGGTCCCCC
CCCCCTATCCTCCCCACGCAAGGAGAAGATGTAATCTGTCGTATCCTCCC
ACTCCGCTGCCTTTTTGCCGAATCTCGAATAATCCCCCCGGCGCTCGCGC
ACTCTGTCGTTGTTGTCAAGGCCTACCGAGGAGTTGCAAGTGGTATGCAC
GGCGAGGACACCATATTCCAGTCGTTCATCGCCTTCGTCGGCATGTCTTG
GTGGGTACCGCACTCACGGCAAACGGCTCGACAAACCGGAGCAGATCCTA
ACCTCAGTTTCGTCTATGCGATACGTGTCTGCTTGTTTCCTTTTACGACG
CTAACTTCCCTCGCCGAGAGCACCCTTCTCAGGGTGTTTGAAAGGGAAGA
GAGTAAATACCGCAGGCCCTAAGCTATGTAGCATGACTTTCTTTGATTTC
TCACTCTGTTGGGTAGGAGACCAACGGCAGGAAGTATTTTCGTGTAGAAA
AACGCGCGCTCGTAAGCTCTGCGGATGGAATGACCCATGGAGCCCACCAC
AGGTGATTGGACGTGCAACGCGGACGATCTCTTCTGGGTTACGTACCCAA
TCGCAGATCCTCCGTGAGAGAGGCATGACAGGACGGTGCGAAGAAACGTG
GACGCGCAATTTGCCGAATGAACGTGACGAGTGGAAAATACAAAATTATA
GAAATCTCCCAACGGGGCCGACATACCCCCTTCGTGTATTGCGAAGGGTG
TTTCCCCATGGCTCCGCCCTCACGCACACCAATGCAGACCTGTACGTTAT
TCCAACCTCCTCACGCCATGGTGCCATGTTTGCGGCGCCCACGTCGAGAT
CACTTCCGTCCCTATGTATTTTTGAAATGCGTGGTGATTTTCGTGCGAGG
GCTGCAAAGCCCTAGCGACGTTCGCGTACGCACTATTAACGAGCCCTCCT
CCCCGTCGACGGCAGGTGTTCGCTGACAACAAGAATACGCTGGGCCACCG
CCTGCATCCGGTGGCGTCTGGGTGGACGAAGAAACACGTCGCGTCCGTCG
CTCAAGATATTCTTGCAGGGCTCTACCGGGGTATGCGGGGTGGATGGGCG
GCCTGTGGTGATGGTTCGGAGACCGCCAGAGAGCTCGACGATACTGGGAA
GGCAGCTGTCTTTCAACTGCCCGCGGTACATTACGGTGGGTTGGATATGA
CGTGGTGAGGAGACGAGGGTGGGCCTTGTTCGAAGGTACCCTGGCAGATG
TCATGAACCGCCGTGTCTGATTTTGACGGCAGCGAAGTTGACAATGGGGC
AATCCTCGGGCATGCAATAGTGTTGCAAGCTTGGTGTGTTTTGTCAGTCC
CGATCGGAGGGGAGGGGGTTCGCGTAACGTGCAGTTATTGCTCAATCCCC
AAGTTCTCGAGGAGGCGGTGGCTGATCGTGGTTGCTGCCAAGCGTTTGGT
GTCGCTCAAGTCCAGTCACCGCTCGCCGGCGGCAGCGCGAGCCTGTTCTG
CCTCAGGAGAAGAAGTCCGAAACGCACCCCGGCGTCCATCGACGACGGAG
GAAATCGGAAGGCGCAAGCAAAGGAGCTGTTATTGCACTGGAAATCGAAC
ATCGTTTCGGGCGCTGTCCAGCTGGTCGATATTCCTTGCTCAGCTTGCCA
GTGGGAACGACTTGTATCCCGCACACTGATTCAGAACAGGAGAGGAAGGT
TCTAAACATTGGTAGGAGGAGTGAGACAGCGATATAGCGTTGTACTGAAT
GCCACACGACGGCTCAGACGGGGCGCTTGGTTCTGAGCAATGGACTAAAC
CCAAGTTTGTTGCTGTGCCTGTACGAGTGTTATGGTTTACAGGTCGTGCA
ATTCAGCTCGTAACAGCGGTTGTGCACCCTTATGCGCGTCTACCACTGAT
TGGTTTGCGATTCTGACCGCTATGCCACCAACGACCTAGCTGAGTAAGTC
AGGGTATTCAACACGTCTGCCCACCAAAGACGGCTCGACTTCCACCTGCT
TCCCAATAGCAAACCCCAATCATGAGTACCGCGCCCCTGCTCGAATGTCC
GCCGTACCAAGGTAACCGAAATGCAGGCACTGATCGAAGCCACCCCGGTC
CCGGCTCGCGTGGCCGACCGGTTGGTGAGGAAGATCGTCCACGATTGGGT
TTTCCGAAGCGACGAAAGGATCACCGGAGGCAGTTTTCAGTCGCCGTCGT
CCTCGGGAGAGTACGGCAACGGCACCGGTGGCGGCAACGGCGGTGTGACG
GCAACGAACCTCAGGAGAACGTCCAGCACTGACTCGTCACGGCCAATGCA
GCGGCGGCCGTCGTCGTCTACCGCCTCCCGATAGACAGCGTATTGAGGGC
GTTTCCTTTTCCAGGGTGTCCCAAGACTATGGCATGGACAAGGTCGTGTC
GGGATATCCTCACACAGGACGGGGATCAGATGTATGTTTCATCGCCGGGT
ATTGCCGCGTGTTGACTTTTCAGTGATGTTCTCCAGGAGGACTACCCTTT
CTATCGTCCGTCTAGCATCCTGTGGCACCTCTGCATGATGGGCTTTTAGA
AGGTGTTGGTCATGGCAATAGCGTTCGGTCCGGCTCAGTGTGCGCCAGGC
TAGGCGGTCTAGGAACGGAAACGGAGCCGACTCGGCGTGTACAGGTTTTA
AGCGATTCTTCTCTTGTTCACGCTTTGTTGTGGTTTATTTGTTCGTCCGT
TCTCCGGTTCAATCCTTAGAATACCGCTAAAGCTGGCGCGCTGAAGATGT
CTCCTTATTCATAATCGTCACAGCAGGGGGCGCTGCGGGTGATCACGCTG
TTGTTTATCGTACTGTTGAGAGAGGGGGATTTGCATGTGAAGCGTTGGAG
CTTCATAGTAGTTGAAGGCGTCCTGCGAGTCGGCGTCGTTTCCCTATCAA
AGTTTATTGTGTTGTTGTTGGTGTGTTGCGTGCGTTCCCGATGTTTGGCG
CCTCCCGGCGGCTTGCAACGACGAACAACCGGCAACAAAGATCAAACGGG
GCGGCGGTTTTCCCGGGGATAATGGCAATATTTTGATTTTTTTCTCACCT
GTGTCATGTGCTTGTATTAGATTCTGACACCATTCGAAATGTATGCTTCG
TCTCGAGCCCCTTGCGTATGTGTATCGCCGGCGTGCACAAGATTCGGATA
TTATCAATATCAAGCATATATGAGGCGGTCAGCGTACGATATTATGGTAC
ATGTACTGTAGGAGTTGTCAACTGCGGGTTACAGTTTGTTGCTCTGTCTC
TGTCTCGGGGGCATTTTCGTATGATGAACGACGCTCGCATGCGTACTCTA
GAGCTTAAGAGACATGCAGGCACGAACGTGCAGCGTTTCAACAGTGATAT
TTTCGACCTTTCATTGT
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Coding sequence (CDS) from alignment at Scaffold_130:375649..380465-

>EsuBft934_3a-0001 ID=EsuBft934_3a-0001|Name=EsuBft934_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=900bp|location=Sequence derived from alignment at Scaffold_130:375649..380465- (Ectocarpus subulatus male Bft15b)
ATGCTCACGTTCCACAAGCGCATGAGCATCGTCACCGACACCCTGAGCAG
AGCGAGCACCCATCTCAACCATTTCCTGTTCGTGTTTTTCCTGGTAATCC
TCGCGTTTGCCGCCCTCACGTGGCTCCTCGTCGGGTCCAGCACGAAAGAG
TTTTCCACCCTGGAGGATGCGTGGCGGAGCGTGATCCGCATCTCCCTCGG
GGAGTCCGAGAATTTCTACCCGCAGATCTTGGATGCGCAGCCCACGGTCG
GACCGGTGGTGGTGGTGCTGTACCAGGTCCTGGGCGTGGTGTTGCTGCTG
AACGTGGTGATCGCTATCCTTCTCGAGGCCTACCGAGGAGTTGCAAGTGG
TATGCACGGCGAGGACACCATATTCCAGTCGTTCATCGCCTTCGTCGGCA
TGTCTTGGTGTTCGCTGACAACAAGAATACGCTGGGCCACCGCCTGCATC
CGGTGGCGTCTGGGTGGACGAAGAAACACGTCGCGTCCGTCGCTCAAGAT
ATTCTTGCAGGGCTCTACCGGGGTATGCGGGGTGGATGGGCGGCCTGTGG
TGATGGTTCGGAGACCGCCAGAGAGCTCGACGATACTGGGAAGGCAGCTG
TCTTTCAACTGCCCGCGGTACATTACGGTAACCGAAATGCAGGCACTGAT
CGAAGCCACCCCGGTCCCGGCTCGCGTGGCCGACCGGTTGGTGAGGAAGA
TCGTCCACGATTGGGTTTTCCGAAGCGACGAAAGGATCACCGGAGGCAGT
TTTCAGTCGCCGTCGTCCTCGGGAGAGTACGGCAACGGCACCGGTGGCGG
CAACGGCGGTGTGACGGCAACGAACCTCAGGAGAACGTCCAGCACTGACT
CGTCACGGCCAATGCAGCGGCGGCCGTCGTCGTCTACCGCCTCCCGATAG
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