EsuBft974_9a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft974_9a-0001
Unique NameEsuBft974_9a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_424contigScaffold_424:415332..415988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft974_9
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length49
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft974_9aEsuBft974_9aEctocarpus subulatus male Bft15bgeneScaffold_424 415332..415988 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft974_9a-0001-exonEsuBft974_9a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_424 415332..415389 +
EsuBft974_9a-0001-exonagat-exon-2994Ectocarpus subulatus male Bft15bexonScaffold_424 415554..415988 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft974_9a-0001-exonagat-five_prime_utr-15413Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_424 415332..415354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft974_9a-0001-cdsEsuBft974_9a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_424 415355..415389 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft974_9a-0001-exonagat-three_prime_utr-23680Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_424 415588..415988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft974_9a-0001EsuBft974_9Ectocarpus subulatus male Bft15bpolypeptideScaffold_424 415355..415587 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft974_9a-0001 ID=EsuBft974_9a-0001|Name=EsuBft974_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=493bp|location=Sequence derived from alignment at Scaffold_424:415332..415988+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCCCTCTCGATATTCTTGCCGCATGCCCCCATCCCCGCTCACTTCCGAC
GTGACAAGGTTTATCGGTTCGATCCAAGTAGACACGGGTTAACGTTGTTC
TGACATTCTTCTTCTTGTGGCAAAACAAATGGTATCACTCTTATCCGTCG
CCTCTATTCCTCACTCTTTTTGTATTCTTTGTTTTTCTGCTCTGATTTTC
AACATAGCATGTCCTTTTTGGCCTTGTTGATGTTTCGTGATGTAATGGCT
AACAATTATCAATGTGCACGTATTTCAGTCCGTGATGTAAGATACGCCAT
GCCATAACTGCCTGTGTCCATTGGTTGTTCGTGCCCCATGTTCGGTTGGT
GACGGTGGTTGTGATGGTGATTGGTGTTTGTGGTGGTGGTACTGATGACG
GTAATGGTAATGGTAATGGTGATGGTGACAATGATGGACATGGAGATGGT
GATGATGACGATGATGGTAACGTAATGGGAACACAGGCTAGGA
back to top

protein sequence of EsuBft974_9a-0001

>EsuBft974_9 ID=EsuBft974_9|Name=EsuBft974_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=22bp
MPPSPLTSDVTRFIGSIQVDTG
back to top

mRNA from alignment at Scaffold_424:415332..415988+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft974_9a-0001 ID=EsuBft974_9a-0001|Name=EsuBft974_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=657bp|location=Sequence derived from alignment at Scaffold_424:415332..415988+ (Ectocarpus subulatus male Bft15b)
CCCCCTCTCGATATTCTTGCCGCATGCCCCCATCCCCGCTCACTTCCGAC
GTGACAAGGTACTGTAAACCCGCATCACAGGGTCCGGGGGGGGTAGGAGG
GGGGTGTACTCATGGTTTGCATGCCCTAGTGAATTGACCAGTGACCACGA
GAGGACGGAGCTGGGGGGGCTTGAATGTTCTTAGCTTGAGAAGTCATGTC
TCTACAAGCTCATTGGGTGAAGGTTTATCGGTTCGATCCAAGTAGACACG
GGTTAACGTTGTTCTGACATTCTTCTTCTTGTGGCAAAACAAATGGTATC
ACTCTTATCCGTCGCCTCTATTCCTCACTCTTTTTGTATTCTTTGTTTTT
CTGCTCTGATTTTCAACATAGCATGTCCTTTTTGGCCTTGTTGATGTTTC
GTGATGTAATGGCTAACAATTATCAATGTGCACGTATTTCAGTCCGTGAT
GTAAGATACGCCATGCCATAACTGCCTGTGTCCATTGGTTGTTCGTGCCC
CATGTTCGGTTGGTGACGGTGGTTGTGATGGTGATTGGTGTTTGTGGTGG
TGGTACTGATGACGGTAATGGTAATGGTAATGGTGATGGTGACAATGATG
GACATGGAGATGGTGATGATGACGATGATGGTAACGTAATGGGAACACAG
GCTAGGA
back to top

Coding sequence (CDS) from alignment at Scaffold_424:415332..415988+

>EsuBft974_9a-0001 ID=EsuBft974_9a-0001|Name=EsuBft974_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=69bp|location=Sequence derived from alignment at Scaffold_424:415332..415988+ (Ectocarpus subulatus male Bft15b)
ATGCCCCCATCCCCGCTCACTTCCGACGTGACAAGGTTTATCGGTTCGAT
CCAAGTAGACACGGGTTAA
back to top