EsuBft119_19a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft119_19a-0001
Unique NameEsuBft119_19a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:503971..505437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft119_19
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length119
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft119_19aEsuBft119_19aEctocarpus subulatus male Bft15bgeneScaffold_420 503971..505437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_19a-0001EsuBft119_19Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 504775..504933 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_19a-0001-exonagat-exon-66678Ectocarpus subulatus male Bft15bexonScaffold_420 503971..504981 -
EsuBft119_19a-0001-exonEsuBft119_19a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 505253..505437 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_19a-0001-exonagat-three_prime_utr-1918Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_420 503971..504774 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_19a-0001-cdsEsuBft119_19a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 504775..504933 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_19a-0001-exonagat-five_prime_utr-1261Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_420 504934..504981 -
EsuBft119_19a-0001-exonagat-five_prime_utr-1262Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_420 505253..505437 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft119_19a-0001 ID=EsuBft119_19a-0001|Name=EsuBft119_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1196bp|location=Sequence derived from alignment at Scaffold_420:503971..505437- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTTGCTGTCCATCCCGGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTAG
GGTTCTTGGCCTAAAAATTCTCGCGACGAAGGGTCAACCAGCCCAATCAG
CTCGTCACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGA
GACAGTACAGCTCCCTCTAGCAAACCTAGGGCTGCTGCCCGTCCACCTTT
CTGATGACGTCTGCCTCCGCGCACAAACATGAGATGGGCATTGCTGCCGA
CACCGACGGCCTGGAGGCCCGCGCATCTGCACATTTGTACCTGACGCACC
AGTGCCGACCCAACTCCACCACTACGCACGCCNCTGCGTACATAGTGCCC
GTCCACCTTTCTGATGACGTCTGCCTCCGCGCACAAACATGAGATGGGCA
TTGCTGCCGACACCGACGGCCTGGAGGCCCGCGCATCTGCACATTTGTAC
CTGACGCACCAGTGCCGACCCAACTCCACCACTACGCACGCCTCACGGCG
GGTGCGCCGCAGCAAGAAGGGATCGGTCCATTGAGGGTGAGTCTAGCCCG
CCTCGCTAGAAAGACCCCCCCCCTCGCTATGGGTCATGCCTACGCAAAAC
CTTGCCGAGGCAGCGAGGGGAAGAAAGAAGTGTATAAAACCTCCACCGCA
CATACCGTGTACCGCACATACATAACCACAACCAAACCAGCAACCATGCT
CGCTCGTTCATCGTTCATGGGCACCGCCTCCATAGGATACCGGCCCCTCT
CAACAGAGGGTCCGATTCGCTTGACGCTCGAGTGTAACCGAGCAACTAGT
CTATAAGCAAGCGTTGTATGATCATGACATCATGACATGGATATTTTGTA
TCTTCGTTGGTTGGTGTGACTAAGATAATAACCCCCGTCCCGACTCTCGA
CTTGTGTTCGCGGAACGCGGGCTAGGTATGAAGAGGATAACACATGAAAT
CCAACAACAACTGTGAGTGAGCCAGCAAGGAGCAGCGAACCTGCTCCCTT
CCCTTTTATTTCATTGTTCCTCCATAACATTGTGGCGTCGTCTAGCATTC
GGACTCCGGTCCTTCGCTGGTGCACCGCAGTTCGCGTTGCTTTTCTGTGC
TTCTGTCCTCTTCCTTTTGTTTCAGTCATTTGTTTTTGTACCGGCTTCAG
GAGGGGGGTACATTTGTCCCTCTGACTCATTTGTCTGTTTGTGGAG
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protein sequence of EsuBft119_19a-0001

>EsuBft119_19 ID=EsuBft119_19|Name=EsuBft119_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=52bp
MGIAADTDGLEARASAHLYLTHQCRPNSTTTHAXAYIVPVHLSDDVCLRA
QT
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mRNA from alignment at Scaffold_420:503971..505437-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft119_19a-0001 ID=EsuBft119_19a-0001|Name=EsuBft119_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1467bp|location=Sequence derived from alignment at Scaffold_420:503971..505437- (Ectocarpus subulatus male Bft15b)
GTTGCTGTCCATCCCGGTCGGTTCCTCGCTTTCTCCCTCGTTGCACTTAG
GGTTCTTGGCCTAAAAATTCTCGCGACGAAGGGTCAACCAGCCCAATCAG
CTCGTCACCACCTGTCCCCTCCTCCTTTGATGGCAAAACCAGGTTACTGA
GACAGTACAGCTCCCTCTAGCAAACCTAGGGCTGCGTACATAGTGCCCGT
CCACCTTTCTGATGACGTCTGCCTCCGCGCACAAACATGAGATGGGCATT
GCTGCCGACACCGACGGCCTGGAGGCCCGCGCATCTNCTCGCTTTCTCCC
TCGTTGCACTTAGGGTTCTTGGTCTGAAAATTCTCGCGACGAAGGGTCAA
CCAGCCCAATCAGCTCGTCACCACCTGTCCCCTCCTCCTTTGATGGCAAA
ACCAGGTTACTGAGACAGTACAGCTCCCTCTAGCAAACCTAGGGCTGCGT
ACATAGTGCCCGTCCACCTTTCTGATGACGTCTGCCTCCGCGCACAAACA
TGAGATGGGCATTGCTGCCGACACCGACGGCCTGGAGGCCCGCGCATCTG
CACATTTGTACCTGACGCACCAGTGCCGACCCAACTCCACCACTACGCAC
GCCNCTGCGTACATAGTGCCCGTCCACCTTTCTGATGACGTCTGCCTCCG
CGCACAAACATGAGATGGGCATTGCTGCCGACACCGACGGCCTGGAGGCC
CGCGCATCTGCACATTTGTACCTGACGCACCAGTGCCGACCCAACTCCAC
CACTACGCACGCCTCACGGCGGGTGCGCCGCAGCAAGAAGGGATCGGTCC
ATTGAGGGTGAGTCTAGCCCGCCTCGCTAGAAAGACCCCCCCCCTCGCTA
TGGGTCATGCCTACGCAAAACCTTGCCGAGGCAGCGAGGGGAAGAAAGAA
GTGTATAAAACCTCCACCGCACATACCGTGTACCGCACATACATAACCAC
AACCAAACCAGCAACCATGCTCGCTCGTTCATCGTTCATGGGCACCGCCT
CCATAGGATACCGGCCCCTCTCAACAGAGGGTCCGATTCGCTTGACGCTC
GAGTGTAACCGAGCAACTAGTCTATAAGCAAGCGTTGTATGATCATGACA
TCATGACATGGATATTTTGTATCTTCGTTGGTTGGTGTGACTAAGATAAT
AACCCCCGTCCCGACTCTCGACTTGTGTTCGCGGAACGCGGGCTAGGTAT
GAAGAGGATAACACATGAAATCCAACAACAACTGTGAGTGAGCCAGCAAG
GAGCAGCGAACCTGCTCCCTTCCCTTTTATTTCATTGTTCCTCCATAACA
TTGTGGCGTCGTCTAGCATTCGGACTCCGGTCCTTCGCTGGTGCACCGCA
GTTCGCGTTGCTTTTCTGTGCTTCTGTCCTCTTCCTTTTGTTTCAGTCAT
TTGTTTTTGTACCGGCTTCAGGAGGGGGGTACATTTGTCCCTCTGACTCA
TTTGTCTGTTTGTGGAG
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Coding sequence (CDS) from alignment at Scaffold_420:503971..505437-

>EsuBft119_19a-0001 ID=EsuBft119_19a-0001|Name=EsuBft119_19a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=159bp|location=Sequence derived from alignment at Scaffold_420:503971..505437- (Ectocarpus subulatus male Bft15b)
ATGGGCATTGCTGCCGACACCGACGGCCTGGAGGCCCGCGCATCTGCACA
TTTGTACCTGACGCACCAGTGCCGACCCAACTCCACCACTACGCACGCCN
CTGCGTACATAGTGCCCGTCCACCTTTCTGATGACGTCTGCCTCCGCGCA
CAAACATGA
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