EsuBft119_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft119_17a-0001
Unique NameEsuBft119_17a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:497418..498170 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft119_17
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length75
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft119_17aEsuBft119_17aEctocarpus subulatus male Bft15bgeneScaffold_420 497418..498170 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_17a-0001-exonEsuBft119_17a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 497418..498170 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_17a-0001-cdsEsuBft119_17a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 497418..498170 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_17a-0001EsuBft119_17Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 497418..498170 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft119_17a-0001 ID=EsuBft119_17a-0001|Name=EsuBft119_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=753bp|location=Sequence derived from alignment at Scaffold_420:497418..498170- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGAGGACGACCAGTCCGGGAGCGGCGGCGACGGCGACGGCGGCGC
AGACCCCGGAGGCGGCGGCGACGGCGACGGTCCGGCGGCGGTAGCAGCAG
CGGGCGGCGGTGGAGCGCCGGATGTCGATGGCGCGGGCGGCCTCGGGAGC
GGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGGGCCCCGA
AGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTAGCAGCAGCGGGCGGCG
GTGGAAGGCCGGATATCGATGACGCGGGCGNCGGCGGCGGCGACGGTCCG
GCGGCGGTAGCAGCAGCGGGCGGCGGTGGAAAGGCGGATGTCGATGACGC
GGGCAGCCTCGCGACCGGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCC
ACAACGCGGGCCCCGAAGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTA
GCAGCAGCGGGCGGCGGTGGAAAGGCGGATGTCGATGACGCGGGCAGCCT
CGCGACCGGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGG
GCCCCGAAGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTAGCAGCAGCG
GGCGGCGGTGGAAAGGCGGATGTCGATGACGCGGGCAGCCTCGCGACCGG
CGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGGGCCCCGAAA
CGGCGGCGGCGGCGGCGACAATCCGGCGGCGAAGCGACGACCTCGAAGGG
TAG
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protein sequence of EsuBft119_17a-0001

>EsuBft119_17 ID=EsuBft119_17|Name=EsuBft119_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=250bp
MDEDDQSGSGGDGDGGADPGGGGDGDGPAAVAAAGGGGAPDVDGAGGLGS
GGAAAPGEGAGHNAGPEGGDGSDGPAAVAAAGGGGRPDIDDAGXGGGDGP
AAVAAAGGGGKADVDDAGSLATGGAAAPGEGAGHNAGPEGGDGSDGPAAV
AAAGGGGKADVDDAGSLATGGAAAPGEGAGHNAGPEGGDGSDGPAAVAAA
GGGGKADVDDAGSLATGGAAAPGEGAGHNAGPETAAAAATIRRRSDDLEG
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mRNA from alignment at Scaffold_420:497418..498170-

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft119_17a-0001 ID=EsuBft119_17a-0001|Name=EsuBft119_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=753bp|location=Sequence derived from alignment at Scaffold_420:497418..498170- (Ectocarpus subulatus male Bft15b)
ATGGATGAGGACGACCAGTCCGGGAGCGGCGGCGACGGCGACGGCGGCGC
AGACCCCGGAGGCGGCGGCGACGGCGACGGTCCGGCGGCGGTAGCAGCAG
CGGGCGGCGGTGGAGCGCCGGATGTCGATGGCGCGGGCGGCCTCGGGAGC
GGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGGGCCCCGA
AGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTAGCAGCAGCGGGCGGCG
GTGGAAGGCCGGATATCGATGACGCGGGCGNCGGCGGCGGCGACGGTCCG
GCGGCGGTAGCAGCAGCGGGCGGCGGTGGAAAGGCGGATGTCGATGACGC
GGGCAGCCTCGCGACCGGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCC
ACAACGCGGGCCCCGAAGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTA
GCAGCAGCGGGCGGCGGTGGAAAGGCGGATGTCGATGACGCGGGCAGCCT
CGCGACCGGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGG
GCCCCGAAGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTAGCAGCAGCG
GGCGGCGGTGGAAAGGCGGATGTCGATGACGCGGGCAGCCTCGCGACCGG
CGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGGGCCCCGAAA
CGGCGGCGGCGGCGGCGACAATCCGGCGGCGAAGCGACGACCTCGAAGGG
TAG
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Coding sequence (CDS) from alignment at Scaffold_420:497418..498170-

>EsuBft119_17a-0001 ID=EsuBft119_17a-0001|Name=EsuBft119_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=753bp|location=Sequence derived from alignment at Scaffold_420:497418..498170- (Ectocarpus subulatus male Bft15b)
ATGGATGAGGACGACCAGTCCGGGAGCGGCGGCGACGGCGACGGCGGCGC
AGACCCCGGAGGCGGCGGCGACGGCGACGGTCCGGCGGCGGTAGCAGCAG
CGGGCGGCGGTGGAGCGCCGGATGTCGATGGCGCGGGCGGCCTCGGGAGC
GGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGGGCCCCGA
AGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTAGCAGCAGCGGGCGGCG
GTGGAAGGCCGGATATCGATGACGCGGGCGNCGGCGGCGGCGACGGTCCG
GCGGCGGTAGCAGCAGCGGGCGGCGGTGGAAAGGCGGATGTCGATGACGC
GGGCAGCCTCGCGACCGGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCC
ACAACGCGGGCCCCGAAGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTA
GCAGCAGCGGGCGGCGGTGGAAAGGCGGATGTCGATGACGCGGGCAGCCT
CGCGACCGGCGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGG
GCCCCGAAGGCGGCGACGGCAGCGACGGTCCGGCGGCGGTAGCAGCAGCG
GGCGGCGGTGGAAAGGCGGATGTCGATGACGCGGGCAGCCTCGCGACCGG
CGGAGCGGCAGCACCAGGCGAAGGCGCGGGCCACAACGCGGGCCCCGAAA
CGGCGGCGGCGGCGGCGACAATCCGGCGGCGAAGCGACGACCTCGAAGGG
TAG
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