EsuBft119_16a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft119_16a-0001
Unique Name	EsuBft119_16a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_420	contig	Scaffold_420:493452..495767 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft119_16
Protein domains	PF14223
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	221
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft119_16a	EsuBft119_16a	Ectocarpus subulatus male Bft15b	gene	Scaffold_420 493452..495767 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_16a-0001-exon	EsuBft119_16a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 493452..494889 +
EsuBft119_16a-0001-exon	agat-exon-66674	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 494989..495767 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_16a-0001-cds	EsuBft119_16a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_420 493452..494889 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_16a-0001-exon	agat-three_prime_utr-1917	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_420 495213..495767 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_16a-0001	EsuBft119_16	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_420 493452..495212 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_420:493452..495767+
coding sequence from alignment at Scaffold_420:493452..495767+

spliced messenger RNA

>EsuBft119_16a-0001 ID=EsuBft119_16a-0001|Name=EsuBft119_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2217bp|location=Sequence derived from alignment at Scaffold_420:493452..495767+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGACGGAGACGGACGACAGCCTCCGGGGGGATCAGGTCAGGCTGT
CCCTCCCCCCGGGGAAGGCGTCGCGGACGGAGGAGGGAGCGATTCTTTCT
TCGTCAACGATGCACGAGACCGAGGGGGTGCGCGAGCGGCAGGAGGGGAA
GATCAGCGCGACACGATGCGTGAGCTGGTTGACCTCTTCAAGCAGGCCTT
CGCGACATCAACTCATGACCAGGGGCACCGTGCCCACTCAGGCACGTCTA
GCAACCAGATCTTAGAACTGAGGCAGAGAGAAAAGATAGATGTACCAGTA
TGGAGTGATGACTATCTGAAGAACAGATCGATCGAAGTTGCATTGCGAGT
GTTCACGAGTGCTTTTGAAGCGTGGCTGGAGAGTGAGGGACTTGCTGGTG
TGATGAGGAGTTCAGAGGTCCCTGTTGGTGCAGCTGGTGTGGATTTGAAT
TGGTTGAGCAGCACGTTCGGAGAGGAGAGAGTGAAGCAATCCAGGAAGAT
TTGGACGTTTATGCTAGCTAAGATCACAGCACAACCCGTACAAGCCCAAA
TCTTGGCATCAGAATCACCTCAAGCAGGGTACCGCGTGTTTCTCGAACAA
TACAGCCAGGACAAGAGTCAGGAGCGACAAACTCTTGACGACGCATGGAA
CGTAATAGGCCAGAGGCAAGGAGAGAGTCTTATGGACTATTACGGTAGGG
CAGTTGCGCTGTGGATGAGACTTCGATCGTATGGTGATAACAGGGATGAA
AAGTCGATGTGCAGGCACATAGTACGGGGATTTCTCCCAAGGTTTGAGAA
AACTAAAGACCGTCTTCTGTTTGATTCGATGTTGTCGAGGGCTACAATGC
AGGAGATGCTGAGGTTGGAAGAGCACGAGCTGAGGTACGAGCGGAGGGCT
GCAGAGGGGAAGGAAGAGATGAGGCACGCCTTCGTCGCTGCCGGCGTGGG
CCGGGGCGGCGAGGCGGGGAAACCAGCCGCTGCAGGATCGGAGCAAGGCG
GACATCGACTCCAGCAACCACAAAGGTCGGTGCAGCCACATCAGCAGCAA
CCATCGCACTTCTGCCAGCTCCACGGCCCCAACAGCACCCACGAGACCTC
CGAATGTCACAAGTTACGCAACGAATTCCTCGCCCACTACAACGAGTTCT
GCGCGTACATGAGCGGGAGGCGGGAGGCCCAGGGGTCGGTCTTCCCTCGA
GGCGGAGCCCAAGACTCGGGGCGGATGGTTGGTGGCCCATCTCGACAGCA
GCCGTACCAAAACGAACAAGGTGCGGGCTGGAGTCGGGGCCACTCTCCAG
CGCTGCCGGGACCGCCGCGTGGGCCAGGATCCGGAGCTGGAGGACAGCTG
CAGGGGCGCAACTCTGGGGGGCGTGGGTATGGTAGATACGGTCCTTGCCC
CCCGGAGAGCCGAGGTCGTCAGATGGGCGGCCGTGGTGGCGGCGACATCA
CCTCGGGATGGGAGGCCACGTGGGCGCCCGGATCTACACCCAGCTGGACC
CCACCACCTCCTGAGGCAGACTACGGGTACGGGCTCGCGGCTCACGGAGT
GGACCATGGCGGAGGTCCCTNTGTACTGCGGCACTATTTTCCGGCTCATT
TCGCCATCGGAGGCGGAGAACCATCAGGCGGCGACATCACCTCGGGATGG
GAGGCCACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNACGGTTTCCACCGATTCCCCGACGGCGGAGGGCTCTACCAGCAGCAAC
AAGTGAGCAACGTACCACACTATCCTTCTGCTGCTGGACCGGACGCCCAA
CAACCACGAGCTTACGAGGCCTTCGATACCTCGCAGCATCAGCAGCATCA
GCAGCATCAGCAGCACTACGGTGCACCCCAGGCGACCTCTTCCGCTTCCT
CTTCCTCTCCAGCTCCTGGCGACGCTCTACCTCCAGCCGGCGATTCCCCT
CTGCGTCTCTTCATGGCACGTGGCGTGTGCCCTCGAGGCAAGTCTGAGAT
TGATTATGAGAAGGATGTTGGTTTTTCGATGTCTAGCGTGTTCACGAGTG
TGGAGTCTGATGTGTCAATGCCTGGTGTTCCCCGCGTGCCTGCTGTGCAT
GAAGGTTCTGATGATGAGTTCGGTGTCTCGACGTTTGGTGTGTCTACTCA
TGATGTACCCCGCGTGCCCGCTGTACTTGAGAGTCCTGATGAAGTGGTCG
GCGTTTCGGAGTGTGAT

protein sequence of EsuBft119_16a-0001

>EsuBft119_16 ID=EsuBft119_16|Name=EsuBft119_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=554bp
MPDGDGRQPPGGSGQAVPPPGEGVADGGGSDSFFVNDARDRGGARAAGGE
DQRDTMRELVDLFKQAFATSTHDQGHRAHSGTSSNQILELRQREKIDVPV
WSDDYLKNRSIEVALRVFTSAFEAWLESEGLAGVMRSSEVPVGAAGVDLN
WLSSTFGEERVKQSRKIWTFMLAKITAQPVQAQILASESPQAGYRVFLEQ
YSQDKSQERQTLDDAWNVIGQRQGESLMDYYGRAVALWMRLRSYGDNRDE
KSMCRHIVRGFLPRFEKTKDRLLFDSMLSRATMQEMLRLEEHELRYERRA
AEGKEEMRHAFVAAGVGRGGEAGKPAAAGSEQGGHRLQQPQRSVQPHQQQ
PSHFCQLHGPNSTHETSECHKLRNEFLAHYNEFCAYMSGRREAQGSVFPR
GGAQDSGRMVGGPSRQQPYQNEQGAGWSRGHSPALPGPPRGPGSGAGGQL
QGRNSGGRGYGRYGPCPPESRGRQMGGRGGGDITSGWEATWAPGSTPSWT
PPPPEADYGYGLAAHGVDHGGGPXVLRHYFPAHFAIGGGEPSGGDITSGW
EATX

mRNA from alignment at Scaffold_420:493452..495767+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft119_16a-0001 ID=EsuBft119_16a-0001|Name=EsuBft119_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2316bp|location=Sequence derived from alignment at Scaffold_420:493452..495767+ (Ectocarpus subulatus male Bft15b)
ATGCCGGACGGAGACGGACGACAGCCTCCGGGGGGATCAGGTCAGGCTGT
CCCTCCCCCCGGGGAAGGCGTCGCGGACGGAGGAGGGAGCGATTCTTTCT
TCGTCAACGATGCACGAGACCGAGGGGGTGCGCGAGCGGCAGGAGGGGAA
GATCAGCGCGACACGATGCGTGAGCTGGTTGACCTCTTCAAGCAGGCCTT
CGCGACATCAACTCATGACCAGGGGCACCGTGCCCACTCAGGCACGTCTA
GCAACCAGATCTTAGAACTGAGGCAGAGAGAAAAGATAGATGTACCAGTA
TGGAGTGATGACTATCTGAAGAACAGATCGATCGAAGTTGCATTGCGAGT
GTTCACGAGTGCTTTTGAAGCGTGGCTGGAGAGTGAGGGACTTGCTGGTG
TGATGAGGAGTTCAGAGGTCCCTGTTGGTGCAGCTGGTGTGGATTTGAAT
TGGTTGAGCAGCACGTTCGGAGAGGAGAGAGTGAAGCAATCCAGGAAGAT
TTGGACGTTTATGCTAGCTAAGATCACAGCACAACCCGTACAAGCCCAAA
TCTTGGCATCAGAATCACCTCAAGCAGGGTACCGCGTGTTTCTCGAACAA
TACAGCCAGGACAAGAGTCAGGAGCGACAAACTCTTGACGACGCATGGAA
CGTAATAGGCCAGAGGCAAGGAGAGAGTCTTATGGACTATTACGGTAGGG
CAGTTGCGCTGTGGATGAGACTTCGATCGTATGGTGATAACAGGGATGAA
AAGTCGATGTGCAGGCACATAGTACGGGGATTTCTCCCAAGGTTTGAGAA
AACTAAAGACCGTCTTCTGTTTGATTCGATGTTGTCGAGGGCTACAATGC
AGGAGATGCTGAGGTTGGAAGAGCACGAGCTGAGGTACGAGCGGAGGGCT
GCAGAGGGGAAGGAAGAGATGAGGCACGCCTTCGTCGCTGCCGGCGTGGG
CCGGGGCGGCGAGGCGGGGAAACCAGCCGCTGCAGGATCGGAGCAAGGCG
GACATCGACTCCAGCAACCACAAAGGTCGGTGCAGCCACATCAGCAGCAA
CCATCGCACTTCTGCCAGCTCCACGGCCCCAACAGCACCCACGAGACCTC
CGAATGTCACAAGTTACGCAACGAATTCCTCGCCCACTACAACGAGTTCT
GCGCGTACATGAGCGGGAGGCGGGAGGCCCAGGGGTCGGTCTTCCCTCGA
GGCGGAGCCCAAGACTCGGGGCGGATGGTTGGTGGCCCATCTCGACAGCA
GCCGTACCAAAACGAACAAGGTGCGGGCTGGAGTCGGGGCCACTCTCCAG
CGCTGCCGGGACCGCCGCGTGGGCCAGGATCCGGAGCTGGAGGACAGCTG
CAGGGGCGCAACTCTGGGGGGCGTGGGTATGGTAGATACGGTCCTTGCCC
CCCGGAGAGCCGAGGTCGTCAGATGGGCGGCCGTGGTGGTAATTATCCGC
CGCCCAACGTTCCTCCCGCGCAGATTGCCAATGTACTGCGGCACTATTTT
CCGGCTCATTTCGCCATCGGAGGCGGAGAACCATCAGGCGGCGACATCAC
CTCGGGATGGGAGGCCACGTGGGCGCCCGGATCTACACCCAGCTGGACCC
CACCACCTCCTGAGGCAGACTACGGGTACGGGCTCGCGGCTCACGGAGTG
GACCATGGCGGAGGTCCCTNTGTACTGCGGCACTATTTTCCGGCTCATTT
CGCCATCGGAGGCGGAGAACCATCAGGCGGCGACATCACCTCGGGATGGG
AGGCCACGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NACGGTTTCCACCGATTCCCCGACGGCGGAGGGCTCTACCAGCAGCAACA
AGTGAGCAACGTACCACACTATCCTTCTGCTGCTGGACCGGACGCCCAAC
AACCACGAGCTTACGAGGCCTTCGATACCTCGCAGCATCAGCAGCATCAG
CAGCATCAGCAGCACTACGGTGCACCCCAGGCGACCTCTTCCGCTTCCTC
TTCCTCTCCAGCTCCTGGCGACGCTCTACCTCCAGCCGGCGATTCCCCTC
TGCGTCTCTTCATGGCACGTGGCGTGTGCCCTCGAGGCAAGTCTGAGATT
GATTATGAGAAGGATGTTGGTTTTTCGATGTCTAGCGTGTTCACGAGTGT
GGAGTCTGATGTGTCAATGCCTGGTGTTCCCCGCGTGCCTGCTGTGCATG
AAGGTTCTGATGATGAGTTCGGTGTCTCGACGTTTGGTGTGTCTACTCAT
GATGTACCCCGCGTGCCCGCTGTACTTGAGAGTCCTGATGAAGTGGTCGG
CGTTTCGGAGTGTGAT

Coding sequence (CDS) from alignment at Scaffold_420:493452..495767+

>EsuBft119_16a-0001 ID=EsuBft119_16a-0001|Name=EsuBft119_16a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1662bp|location=Sequence derived from alignment at Scaffold_420:493452..495767+ (Ectocarpus subulatus male Bft15b)
ATGCCGGACGGAGACGGACGACAGCCTCCGGGGGGATCAGGTCAGGCTGT
CCCTCCCCCCGGGGAAGGCGTCGCGGACGGAGGAGGGAGCGATTCTTTCT
TCGTCAACGATGCACGAGACCGAGGGGGTGCGCGAGCGGCAGGAGGGGAA
GATCAGCGCGACACGATGCGTGAGCTGGTTGACCTCTTCAAGCAGGCCTT
CGCGACATCAACTCATGACCAGGGGCACCGTGCCCACTCAGGCACGTCTA
GCAACCAGATCTTAGAACTGAGGCAGAGAGAAAAGATAGATGTACCAGTA
TGGAGTGATGACTATCTGAAGAACAGATCGATCGAAGTTGCATTGCGAGT
GTTCACGAGTGCTTTTGAAGCGTGGCTGGAGAGTGAGGGACTTGCTGGTG
TGATGAGGAGTTCAGAGGTCCCTGTTGGTGCAGCTGGTGTGGATTTGAAT
TGGTTGAGCAGCACGTTCGGAGAGGAGAGAGTGAAGCAATCCAGGAAGAT
TTGGACGTTTATGCTAGCTAAGATCACAGCACAACCCGTACAAGCCCAAA
TCTTGGCATCAGAATCACCTCAAGCAGGGTACCGCGTGTTTCTCGAACAA
TACAGCCAGGACAAGAGTCAGGAGCGACAAACTCTTGACGACGCATGGAA
CGTAATAGGCCAGAGGCAAGGAGAGAGTCTTATGGACTATTACGGTAGGG
CAGTTGCGCTGTGGATGAGACTTCGATCGTATGGTGATAACAGGGATGAA
AAGTCGATGTGCAGGCACATAGTACGGGGATTTCTCCCAAGGTTTGAGAA
AACTAAAGACCGTCTTCTGTTTGATTCGATGTTGTCGAGGGCTACAATGC
AGGAGATGCTGAGGTTGGAAGAGCACGAGCTGAGGTACGAGCGGAGGGCT
GCAGAGGGGAAGGAAGAGATGAGGCACGCCTTCGTCGCTGCCGGCGTGGG
CCGGGGCGGCGAGGCGGGGAAACCAGCCGCTGCAGGATCGGAGCAAGGCG
GACATCGACTCCAGCAACCACAAAGGTCGGTGCAGCCACATCAGCAGCAA
CCATCGCACTTCTGCCAGCTCCACGGCCCCAACAGCACCCACGAGACCTC
CGAATGTCACAAGTTACGCAACGAATTCCTCGCCCACTACAACGAGTTCT
GCGCGTACATGAGCGGGAGGCGGGAGGCCCAGGGGTCGGTCTTCCCTCGA
GGCGGAGCCCAAGACTCGGGGCGGATGGTTGGTGGCCCATCTCGACAGCA
GCCGTACCAAAACGAACAAGGTGCGGGCTGGAGTCGGGGCCACTCTCCAG
CGCTGCCGGGACCGCCGCGTGGGCCAGGATCCGGAGCTGGAGGACAGCTG
CAGGGGCGCAACTCTGGGGGGCGTGGGTATGGTAGATACGGTCCTTGCCC
CCCGGAGAGCCGAGGTCGTCAGATGGGCGGCCGTGGTGGCGGCGACATCA
CCTCGGGATGGGAGGCCACGTGGGCGCCCGGATCTACACCCAGCTGGACC
CCACCACCTCCTGAGGCAGACTACGGGTACGGGCTCGCGGCTCACGGAGT
GGACCATGGCGGAGGTCCCTNTGTACTGCGGCACTATTTTCCGGCTCATT
TCGCCATCGGAGGCGGAGAACCATCAGGCGGCGACATCACCTCGGGATGG
GAGGCCACGTNN