EsuBft119_15a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft119_15a-0001
Unique NameEsuBft119_15a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:491148..491953 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft119_15
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length55
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft119_15aEsuBft119_15aEctocarpus subulatus male Bft15bgeneScaffold_420 491148..491953 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_15a-0001-exonEsuBft119_15a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 491148..491648 -
EsuBft119_15a-0001-exonagat-exon-66673Ectocarpus subulatus male Bft15bexonScaffold_420 491899..491953 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_15a-0001-exonagat-three_prime_utr-1916Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_420 491148..491530 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_15a-0001-cdsEsuBft119_15a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 491531..491648 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_15a-0001-exonagat-five_prime_utr-1260Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_420 491928..491953 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_15a-0001EsuBft119_15Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 491531..491927 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft119_15a-0001 ID=EsuBft119_15a-0001|Name=EsuBft119_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=556bp|location=Sequence derived from alignment at Scaffold_420:491148..491953- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCTCGCATTTTCGTGGTACGACAGCGATGGCCTTTTGCACGCATCGCCGT
CACAGGGACCTTCGGGACAGCCTCAAGTCCGCCGCGGTGGCTCGAGTACG
CTCGTGCCCACCGCGTCCCCTCCAGACCCTTCGCGACGTTCCTCTACGGA
GCATCAACGTCGCACGGTGCTGACTGCACCACCGTTGCCGAGCGCAGGTA
ACGGTTTTCCCAAATGGGAAGAATCATGTTCTTTGTCACGAAGTAGCGGT
CCCGAGCCTCCCGCGGCCGCTGGCCATGTTGGTCGAGCGCCCGCGAAGAA
GGCCGCTTTCAATGAACAGGCCTACGCCGACGTTTTGAGCGAAAACGCCC
GCGTCGACCGCTTGGTTTCGCACGCTTCTGCGGCTGGTTCACCGCTTTTG
CCTGCCTCTCCTCGTAACTCACAATCCGGCCCGCCTTCGGGTGGCACCCA
GATTGTCCTCCCGGTTGCCGGTGCCATTTCCCTTGATAATATTTCTTCGG
GGAAGGTAAGCGCACCCGCGCGACAGGCCCCTGTTGTTGATGGTAGTCAG
GGATAT
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protein sequence of EsuBft119_15a-0001

>EsuBft119_15 ID=EsuBft119_15|Name=EsuBft119_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=48bp
MAFCTHRRHRDLRDSLKSAAVARVRSCPPRPLQTLRDVPLRSINVARC
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mRNA from alignment at Scaffold_420:491148..491953-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft119_15a-0001 ID=EsuBft119_15a-0001|Name=EsuBft119_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=806bp|location=Sequence derived from alignment at Scaffold_420:491148..491953- (Ectocarpus subulatus male Bft15b)
CCTCGCATTTTCGTGGTACGACAGCGATGGCCTTTTGCACGCATCGCCGT
CACAGGTATGTGTTGGACTTCCAACCTTTTGTGTCTCAGATATATATCGC
CCGCGCCTCATCACAACTTGTTTTGGGCGACCGTCGTGACTTGTCGGTGC
CGACTACAGCCTTGTGGTGTGGGCGCGGGAACGATAAGACGTCGGGTGTC
TCACGGACGCTCGCCCCGATGCCTATGCCCTCTGGAGGCATGGCTTCCGC
GCCTCCCACCGTTTCGGCGGCTCCGAGTGGTCTAGTCAACCTCGTCGGGG
CTCAGGGACCTTCGGGACAGCCTCAAGTCCGCCGCGGTGGCTCGAGTACG
CTCGTGCCCACCGCGTCCCCTCCAGACCCTTCGCGACGTTCCTCTACGGA
GCATCAACGTCGCACGGTGCTGACTGCACCACCGTTGCCGAGCGCAGGTA
ACGGTTTTCCCAAATGGGAAGAATCATGTTCTTTGTCACGAAGTAGCGGT
CCCGAGCCTCCCGCGGCCGCTGGCCATGTTGGTCGAGCGCCCGCGAAGAA
GGCCGCTTTCAATGAACAGGCCTACGCCGACGTTTTGAGCGAAAACGCCC
GCGTCGACCGCTTGGTTTCGCACGCTTCTGCGGCTGGTTCACCGCTTTTG
CCTGCCTCTCCTCGTAACTCACAATCCGGCCCGCCTTCGGGTGGCACCCA
GATTGTCCTCCCGGTTGCCGGTGCCATTTCCCTTGATAATATTTCTTCGG
GGAAGGTAAGCGCACCCGCGCGACAGGCCCCTGTTGTTGATGGTAGTCAG
GGATAT
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Coding sequence (CDS) from alignment at Scaffold_420:491148..491953-

>EsuBft119_15a-0001 ID=EsuBft119_15a-0001|Name=EsuBft119_15a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=147bp|location=Sequence derived from alignment at Scaffold_420:491148..491953- (Ectocarpus subulatus male Bft15b)
ATGGCCTTTTGCACGCATCGCCGTCACAGGGACCTTCGGGACAGCCTCAA
GTCCGCCGCGGTGGCTCGAGTACGCTCGTGCCCACCGCGTCCCCTCCAGA
CCCTTCGCGACGTTCCTCTACGGAGCATCAACGTCGCACGGTGCTGA
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