EsuBft119_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft119_10a-0001
Unique NameEsuBft119_10a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:423737..425369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft119_10
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length124
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-03_002220.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft119_10aEsuBft119_10aEctocarpus subulatus male Bft15bgeneScaffold_420 423737..425369 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_10a-0001-exonEsuBft119_10a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 423737..424873 -
EsuBft119_10a-0001-exonagat-exon-66633Ectocarpus subulatus male Bft15bexonScaffold_420 425177..425186 -
EsuBft119_10a-0001-exonagat-exon-66632Ectocarpus subulatus male Bft15bexonScaffold_420 425269..425369 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_10a-0001-cdsEsuBft119_10a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 423737..424873 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft119_10a-0001EsuBft119_10Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 423737..425369 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft119_10a-0001 ID=EsuBft119_10a-0001|Name=EsuBft119_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1248bp|location=Sequence derived from alignment at Scaffold_420:423737..425369- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATGTTGACGGAAGCGCTCGAGACATCAATGAAGATTATCGACCC
AAGAGGGGGCTTCCCGAATCCAGTAGCGAGCCAATACTCTCTTCTGCTCA
GTCCAATTCAATCGTTGTCTTCTGACGTCACATCGTTGGCTAGTCACTGC
GGCTTCGAATTCAATTTTCGCAGCCACGGAGGCAGCAATTCTAGTATTTC
CTCCTCCATCCGAACAGCTCAACCATCCAACCACCAGCCGCATGAGCGAC
GGCATCAGCACCGCAACAGCGGGCAGCAGAACTCGGCTGACGCGCCGACG
TGGTCTCCTTCTCATGCTGGCGGCGATACCTCTCCCACAGCCGCCTTGTC
CGTCATGTCTTCGGGGGACGCAGACACTACCCCGCTCCCGGGCGTCTGCT
ACATCACGTACCCTCCGACACCAGACGTAGCGGCGGTTTCCTTGGCTTCT
CCGCCTGCAGAACGCGGCCTCGATGGCCCCCGCGCCCGTGCCCGCAACCG
CAGAAGCGATGTCGGCAGCGACGCCACTCAAATCGCTCGCGCCAGGAGAG
GGGACTCCTCTGTTGACCTTCCCGGTGACGTGGAAGAAGAAGAAACAGAA
GGGGGTGAGAACGGTTCAGCTGCAGCGGACGCTTCGCTACGGGAGACACA
CGAAGATGAGTGTTCGTTCACGGTGGGCGGTACTACCAACGCATCATCTC
CAGTCGGCAGCTGGCATCACGAAAGATGCGGCAACCGCGACATCGACGAT
ACTGGCGGTCCGGGCCGAACAAGTGGTGAGGAGGGTCAGCGGCAACGAGC
GCCCACGGAACAACCACCATTGGCCAGCGAAAAAAACGCGTTGAAACGAC
ACGTTGCCTACGACTTGGAAGAGGACTCGGGAAGCTACAAGTCCGGATTA
GTCGGGGCGGGGGAGATGGCGTCCATGGAGGGAATAACGGAGCAGGGATC
AGAACATCGAGCGGTGCCGAGGAGGCAGGCTGGGAAGGGCGGCGGCGGTG
GGGAACGGCCCATGCGGTGTGGTCAAAAGGTGATCTCGATGATGATTTCG
GATGGCCACCCGTTGGTGGCGTCGAGGGGGTTTCCATCGCTTCCTGGGGT
GGACGAGCACCAGCTCCCATCGTTCTGGCTGGCCGAGATGCACGACAACA
TGAGGAAAAACAGGCAAGCACGATCTCCCTCCTTCATACAAGAGTGTGTT
GTGGAGGCCTGTCGAGCAAGAGTTTTGTCCTCGTTCCTGCTATTGTAA
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protein sequence of EsuBft119_10a-0001

>EsuBft119_10 ID=EsuBft119_10|Name=EsuBft119_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=415bp
MFMLTEALETSMKIIDPRGGFPNPVASQYSLLLSPIQSLSSDVTSLASHC
GFEFNFRSHGGSNSSISSSIRTAQPSNHQPHERRHQHRNSGQQNSADAPT
WSPSHAGGDTSPTAALSVMSSGDADTTPLPGVCYITYPPTPDVAAVSLAS
PPAERGLDGPRARARNRRSDVGSDATQIARARRGDSSVDLPGDVEEEETE
GGENGSAAADASLRETHEDECSFTVGGTTNASSPVGSWHHERCGNRDIDD
TGGPGRTSGEEGQRQRAPTEQPPLASEKNALKRHVAYDLEEDSGSYKSGL
VGAGEMASMEGITEQGSEHRAVPRRQAGKGGGGGERPMRCGQKVISMMIS
DGHPLVASRGFPSLPGVDEHQLPSFWLAEMHDNMRKNRQARSPSFIQECV
VEACRARVLSSFLLL
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mRNA from alignment at Scaffold_420:423737..425369-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft119_10a-0001 ID=EsuBft119_10a-0001|Name=EsuBft119_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1633bp|location=Sequence derived from alignment at Scaffold_420:423737..425369- (Ectocarpus subulatus male Bft15b)
ATGTTCATGTTGACGGAAGCGCTCGAGACATCAATGAAGATTATCGACCC
AAGAGGGGGCTTCCCGAATCCAGTAGCGAGCCAATACTCTCTTCTGCTCA
GGTACGTATGCTTCTTTGCCGTCAACTGCACACTGTGCAGATGCAAATCT
TCGTCGTGCTTGACATCATTTTATGTGGTGCAGTCCAATTCAAGTAAGCG
TGTCACCACAGCCCAACCTTCCCCGCACGACCTTTCCAGAGTTCCATGTA
GATATGATGTGCAACTCTTTGCTGGTTGTGGATTGAGTAGTACGGCTGGC
GTCAAAGTTGGACTCGTCAGGGTTTCTTGTGTCCTCGGACATCACCAGAG
TATCCGGAGGCCTCCCGGAACCTGCCTCTGACTACGCCCACTGCACCTTC
CCAGCCTCCGTGTCTCGAGCTACGTGACCCTCTGCTCTAACTCTTACTCG
TGTCACGTCCAAACCGTGAATCGCTACGTTTCGTTCCCTTGCTCAGTCGT
TGTCTTCTGACGTCACATCGTTGGCTAGTCACTGCGGCTTCGAATTCAAT
TTTCGCAGCCACGGAGGCAGCAATTCTAGTATTTCCTCCTCCATCCGAAC
AGCTCAACCATCCAACCACCAGCCGCATGAGCGACGGCATCAGCACCGCA
ACAGCGGGCAGCAGAACTCGGCTGACGCGCCGACGTGGTCTCCTTCTCAT
GCTGGCGGCGATACCTCTCCCACAGCCGCCTTGTCCGTCATGTCTTCGGG
GGACGCAGACACTACCCCGCTCCCGGGCGTCTGCTACATCACGTACCCTC
CGACACCAGACGTAGCGGCGGTTTCCTTGGCTTCTCCGCCTGCAGAACGC
GGCCTCGATGGCCCCCGCGCCCGTGCCCGCAACCGCAGAAGCGATGTCGG
CAGCGACGCCACTCAAATCGCTCGCGCCAGGAGAGGGGACTCCTCTGTTG
ACCTTCCCGGTGACGTGGAAGAAGAAGAAACAGAAGGGGGTGAGAACGGT
TCAGCTGCAGCGGACGCTTCGCTACGGGAGACACACGAAGATGAGTGTTC
GTTCACGGTGGGCGGTACTACCAACGCATCATCTCCAGTCGGCAGCTGGC
ATCACGAAAGATGCGGCAACCGCGACATCGACGATACTGGCGGTCCGGGC
CGAACAAGTGGTGAGGAGGGTCAGCGGCAACGAGCGCCCACGGAACAACC
ACCATTGGCCAGCGAAAAAAACGCGTTGAAACGACACGTTGCCTACGACT
TGGAAGAGGACTCGGGAAGCTACAAGTCCGGATTAGTCGGGGCGGGGGAG
ATGGCGTCCATGGAGGGAATAACGGAGCAGGGATCAGAACATCGAGCGGT
GCCGAGGAGGCAGGCTGGGAAGGGCGGCGGCGGTGGGGAACGGCCCATGC
GGTGTGGTCAAAAGGTGATCTCGATGATGATTTCGGATGGCCACCCGTTG
GTGGCGTCGAGGGGGTTTCCATCGCTTCCTGGGGTGGACGAGCACCAGCT
CCCATCGTTCTGGCTGGCCGAGATGCACGACAACATGAGGAAAAACAGGC
AAGCACGATCTCCCTCCTTCATACAAGAGTGTGTTGTGGAGGCCTGTCGA
GCAAGAGTTTTGTCCTCGTTCCTGCTATTGTAA
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Coding sequence (CDS) from alignment at Scaffold_420:423737..425369-

>EsuBft119_10a-0001 ID=EsuBft119_10a-0001|Name=EsuBft119_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1248bp|location=Sequence derived from alignment at Scaffold_420:423737..425369- (Ectocarpus subulatus male Bft15b)
ATGTTCATGTTGACGGAAGCGCTCGAGACATCAATGAAGATTATCGACCC
AAGAGGGGGCTTCCCGAATCCAGTAGCGAGCCAATACTCTCTTCTGCTCA
GTCCAATTCAATCGTTGTCTTCTGACGTCACATCGTTGGCTAGTCACTGC
GGCTTCGAATTCAATTTTCGCAGCCACGGAGGCAGCAATTCTAGTATTTC
CTCCTCCATCCGAACAGCTCAACCATCCAACCACCAGCCGCATGAGCGAC
GGCATCAGCACCGCAACAGCGGGCAGCAGAACTCGGCTGACGCGCCGACG
TGGTCTCCTTCTCATGCTGGCGGCGATACCTCTCCCACAGCCGCCTTGTC
CGTCATGTCTTCGGGGGACGCAGACACTACCCCGCTCCCGGGCGTCTGCT
ACATCACGTACCCTCCGACACCAGACGTAGCGGCGGTTTCCTTGGCTTCT
CCGCCTGCAGAACGCGGCCTCGATGGCCCCCGCGCCCGTGCCCGCAACCG
CAGAAGCGATGTCGGCAGCGACGCCACTCAAATCGCTCGCGCCAGGAGAG
GGGACTCCTCTGTTGACCTTCCCGGTGACGTGGAAGAAGAAGAAACAGAA
GGGGGTGAGAACGGTTCAGCTGCAGCGGACGCTTCGCTACGGGAGACACA
CGAAGATGAGTGTTCGTTCACGGTGGGCGGTACTACCAACGCATCATCTC
CAGTCGGCAGCTGGCATCACGAAAGATGCGGCAACCGCGACATCGACGAT
ACTGGCGGTCCGGGCCGAACAAGTGGTGAGGAGGGTCAGCGGCAACGAGC
GCCCACGGAACAACCACCATTGGCCAGCGAAAAAAACGCGTTGAAACGAC
ACGTTGCCTACGACTTGGAAGAGGACTCGGGAAGCTACAAGTCCGGATTA
GTCGGGGCGGGGGAGATGGCGTCCATGGAGGGAATAACGGAGCAGGGATC
AGAACATCGAGCGGTGCCGAGGAGGCAGGCTGGGAAGGGCGGCGGCGGTG
GGGAACGGCCCATGCGGTGTGGTCAAAAGGTGATCTCGATGATGATTTCG
GATGGCCACCCGTTGGTGGCGTCGAGGGGGTTTCCATCGCTTCCTGGGGT
GGACGAGCACCAGCTCCCATCGTTCTGGCTGGCCGAGATGCACGACAACA
TGAGGAAAAACAGGCAAGCACGATCTCCCTCCTTCATACAAGAGTGTGTT
GTGGAGGCCTGTCGAGCAAGAGTTTTGTCCTCGTTCCTGCTATTGTAA
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