EsuBft119_5a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft119_5a-0001
Unique Name	EsuBft119_5a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_420	contig	Scaffold_420:333531..335636 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft119_5
Protein domains	TMhelix
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-TM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	210
Hectar predicted targeting category	signal peptide
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft119_5a	EsuBft119_5a	Ectocarpus subulatus male Bft15b	gene	Scaffold_420 333531..335636 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_5a-0001-exon	EsuBft119_5a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_420 333531..335636 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_5a-0001-cds	EsuBft119_5a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_420 333531..333680 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_5a-0001-exon	agat-three_prime_utr-1920	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_420 333681..335636 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft119_5a-0001	EsuBft119_5	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_420 333531..333680 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_420:333531..335636+
coding sequence from alignment at Scaffold_420:333531..335636+

spliced messenger RNA

>EsuBft119_5a-0001 ID=EsuBft119_5a-0001|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2106bp|location=Sequence derived from alignment at Scaffold_420:333531..335636+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCCTGCTCCATGGTCGTCTTCGTCCTCCTTTCTTCCCTTTCCCT
TTCCTTCGTCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAAATCCCAACCGATTGGCTTTGGTGGAAGTTGGTCGATCAGTAG
CCCATGATGTTTGAACACATCGCGAGTTCGCATCGAAAGAAAACGAGCTA
GCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAACGCTTTCAGG
CGAACTAAGGCTCTTTCGTCTTCAAAATTCCCCCGGCAAAACGCTTCGTG
CGCCAAATGGTTGGCGATAGCCACGATGAGTCGATTGGTGCCTTTGCCAA
GACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGG
TTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAG
GGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCTTCGACCTGCTGATG
GGTTGACGATTGTTACGTCGATCAGAATGGACTTGGTGCAGAGGTCCTCT
TCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACCAAATCCATCTTGTA
TAGCCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAA
CGGCGATGGGCATATGGCACTCGCGCAGTGTCTTGAGGACCACTCGAACC
ATCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGA
GTGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAATGCACCTGCACCAC
AAAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGA
CCGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAA
CCCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCA
AGCGGATTAACGCCCTCTTCTTTGGCGTTTCCTCGCCTACTACTTTCTGC
AAGTCTGTCTCCACCATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAG
GAGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAATTCATTTCGGC
TGAAGGTAGACGGTGGTTGATGTTCTACGTCAGGGTTTCCATCTTCACGG
GGTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGG
GGTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTT
TTTCAAGCTTGTCTTTGGTGATTATTTCCTCTAGCTTCTTCAGCGAGTCA
ATCAGAGCCAACCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTC
AACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAGAACACCAGCGCTT
GCCCTGCCACAAAAGCCGATTCTCGAATGAGAACATTGCTCGTGATTCCT
AGTCCTCCTTCTCGCATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTT
GAAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGA
CCGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTC
ATTGCCCACATCATCATGTTGTCATGTATTTTTGCGGCAGAGTTGGTGAT
AGACGGTGCAATCGTCCTCAGCAGATGGAACAAACGTGGCACACCAGATA
AACGCAGCAGTTGATAGCTGGCTTGAGGGTCGTCAAGCGTTGCTAGGCGG
AGTATCAATTCCGCCGGGTCACCACGGGCGATTTTGGAAACGAAATTCCT
CTGGAACTCCTCTGTTCCTACTGGGATCCCGACAACTGGCATGCCACCTT
CAGCAACTGACAGACCAATTTTCGTCAATTGTTGCTGTTCGTCGTTTGTC
AAAGAGGACATGCAAAGACCTTCCGGGAAAAGCACTTTGGATTTCGGGAG
ACTGAGCTCAATGCCTTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTA
CAGTGGATATGGCCTGCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCT
TGGAGGTCGTCGACGTATCCGATGAGTTTCACTCCTGGCACTGGTGGCTT
GTTGTT

protein sequence of EsuBft119_5a-0001

>EsuBft119_5 ID=EsuBft119_5|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=49bp
MFSCSMVVFVLLSSLSLSFVFVTPKRITLTTIVVAEIPTDWLWWKLVDQ

mRNA from alignment at Scaffold_420:333531..335636+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft119_5a-0001 ID=EsuBft119_5a-0001|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2106bp|location=Sequence derived from alignment at Scaffold_420:333531..335636+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCCTGCTCCATGGTCGTCTTCGTCCTCCTTTCTTCCCTTTCCCT
TTCCTTCGTCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAAATCCCAACCGATTGGCTTTGGTGGAAGTTGGTCGATCAGTAG
CCCATGATGTTTGAACACATCGCGAGTTCGCATCGAAAGAAAACGAGCTA
GCTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAACGCTTTCAGG
CGAACTAAGGCTCTTTCGTCTTCAAAATTCCCCCGGCAAAACGCTTCGTG
CGCCAAATGGTTGGCGATAGCCACGATGAGTCGATTGGTGCCTTTGCCAA
GACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGG
TTGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAG
GGCTGATCCTGGCTTAAGGATCGACTTGTCGATGCTTCGACCTGCTGATG
GGTTGACGATTGTTACGTCGATCAGAATGGACTTGGTGCAGAGGTCCTCT
TCCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACCAAATCCATCTTGTA
TAGCCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAA
CGGCGATGGGCATATGGCACTCGCGCAGTGTCTTGAGGACCACTCGAACC
ATCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGA
GTGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAATGCACCTGCACCAC
AAAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGA
CCGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAA
CCCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCA
AGCGGATTAACGCCCTCTTCTTTGGCGTTTCCTCGCCTACTACTTTCTGC
AAGTCTGTCTCCACCATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAG
GAGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAATTCATTTCGGC
TGAAGGTAGACGGTGGTTGATGTTCTACGTCAGGGTTTCCATCTTCACGG
GGTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGG
GGTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTT
TTTCAAGCTTGTCTTTGGTGATTATTTCCTCTAGCTTCTTCAGCGAGTCA
ATCAGAGCCAACCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTC
AACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAGAACACCAGCGCTT
GCCCTGCCACAAAAGCCGATTCTCGAATGAGAACATTGCTCGTGATTCCT
AGTCCTCCTTCTCGCATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTT
GAAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACCTCTTTGA
CCGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTC
ATTGCCCACATCATCATGTTGTCATGTATTTTTGCGGCAGAGTTGGTGAT
AGACGGTGCAATCGTCCTCAGCAGATGGAACAAACGTGGCACACCAGATA
AACGCAGCAGTTGATAGCTGGCTTGAGGGTCGTCAAGCGTTGCTAGGCGG
AGTATCAATTCCGCCGGGTCACCACGGGCGATTTTGGAAACGAAATTCCT
CTGGAACTCCTCTGTTCCTACTGGGATCCCGACAACTGGCATGCCACCTT
CAGCAACTGACAGACCAATTTTCGTCAATTGTTGCTGTTCGTCGTTTGTC
AAAGAGGACATGCAAAGACCTTCCGGGAAAAGCACTTTGGATTTCGGGAG
ACTGAGCTCAATGCCTTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTA
CAGTGGATATGGCCTGCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCT
TGGAGGTCGTCGACGTATCCGATGAGTTTCACTCCTGGCACTGGTGGCTT
GTTGTT

Coding sequence (CDS) from alignment at Scaffold_420:333531..335636+

>EsuBft119_5a-0001 ID=EsuBft119_5a-0001|Name=EsuBft119_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=150bp|location=Sequence derived from alignment at Scaffold_420:333531..335636+ (Ectocarpus subulatus male Bft15b)
ATGTTTTCCTGCTCCATGGTCGTCTTCGTCCTCCTTTCTTCCCTTTCCCT
TTCCTTCGTCTTCGTCACTCCCAAAAGAATTACCCTCACTACTATCGTTG
TCGCAGAAATCCCAACCGATTGGCTTTGGTGGAAGTTGGTCGATCAGTAG