EsuBft1227_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1227_3a-0001
Unique NameEsuBft1227_3a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_420contigScaffold_420:166485..168815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D8LCP9
ProteomeIdEsuBft1227_3
Ownerapollo_admin@sb-roscoff.fr
Nb exon4
Max annot lvl2759|Eukaryota
Length62
Hectar predicted targeting categoryother localisation
Evalue2.67e-76
EggNOG OGs2E49E@1|root,2SB7B@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_002070.1
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_3aEsuBft1227_3aEctocarpus subulatus male Bft15bgeneScaffold_420 166485..168815 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_3a-0001-exonEsuBft1227_3a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_420 166485..166649 +
EsuBft1227_3a-0001-exonagat-exon-83428Ectocarpus subulatus male Bft15bexonScaffold_420 167046..167198 +
EsuBft1227_3a-0001-exonagat-exon-83426Ectocarpus subulatus male Bft15bexonScaffold_420 168312..168371 +
EsuBft1227_3a-0001-exonagat-exon-83427Ectocarpus subulatus male Bft15bexonScaffold_420 168573..168815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_3a-0001-cdsEsuBft1227_3a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_420 166485..166649 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1227_3a-0001EsuBft1227_3Ectocarpus subulatus male Bft15bpolypeptideScaffold_420 166485..168815 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1227_3a-0001 ID=EsuBft1227_3a-0001|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=621bp|location=Sequence derived from alignment at Scaffold_420:166485..168815+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGGCTCACATTCATCTTGAGCATCTTCCGTGACCCCGTAACTTCGAG
CATCCCCGAACTTGAGGCGGCTCAGCGGAACCCAACGTTTCAGCTTCGCA
CGTTCGGGCCCTACCGTTCAGAGTACGGCCGCCTGGTGGAGTTCCCACAC
TTGCCCCCCCTGCTGGGCCAACAACATTGTGCCATTGCGGCCGGTTTCGG
TGTATACCATTCCTCTGCTAGCCTGGCACTGCTTCAGTTCGTTACCAACA
CCCTTCTCGCCGAGCGGTCCCCCGGGATTCACATCCAGACCGCTCTGACA
CGCCACGAAGATGTTCAGATTGTTGGTGACACCAGCGGCCCCGAGCCTGA
GCTGGTCATGGGTCACCTGGACATCAAGCACGACACGACAGATTCCAATT
CTTTGTTCGCCGGCTACGTTCGACGGTACGACAAGTTTGTGAACCCGCGC
TGGCGGGCGTTGCCCCTGGTGTTCGCATGTTTGGTGCTTCCTCAGACAAT
CATCGGTGAAGTTTCCCAAGAAACGGAGGTTTACTTCTGCGGTGGTGGGG
GCGTCAACGCGCCTCTTTGCGAGACGTGCGCTAGGCGTGGCATCAAGTAC
GTCGGCAGATCCGTCCAGTGA
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protein sequence of EsuBft1227_3a-0001

>EsuBft1227_3 ID=EsuBft1227_3|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=206bp
MGLTFILSIFRDPVTSSIPELEAAQRNPTFQLRTFGPYRSEYGRLVEFPH
LPPLLGQQHCAIAAGFGVYHSSASLALLQFVTNTLLAERSPGIHIQTALT
RHEDVQIVGDTSGPEPELVMGHLDIKHDTTDSNSLFAGYVRRYDKFVNPR
WRALPLVFACLVLPQTIIGEVSQETEVYFCGGGGVNAPLCETCARRGIKY
VGRSVQ
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mRNA from alignment at Scaffold_420:166485..168815+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1227_3a-0001 ID=EsuBft1227_3a-0001|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2331bp|location=Sequence derived from alignment at Scaffold_420:166485..168815+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTCACATTCATCTTGAGCATCTTCCGTGACCCCGTAACTTCGAG
CATCCCCGAACTTGAGGCGGCTCAGCGGAACCCAACGTTTCAGCTTCGCA
CGTTCGGGCCCTACCGTTCAGAGTACGGCCGCCTGGTGGAGTTCCCACAC
TTGCCCCCCCTGCTGGTATGAACGGTTGCGGGATTTGCGATTTATTGGAA
CGTTGTCGAGAAACCTTCGGAGGGTTGTTGAAAGGCTGGAACCAACCAAC
CAGTTGGTCGGTCTAGTGCGCTGATGGCAATGTGGGACGCAAGTCACGCT
GACGCAGCCGATGGTGAGGCCGTTGCTTGATTAACGTTTACCATGCTAGA
CCAACTGATGATTCCTAGACATCACGGCATCCGGTTGCTTCCGCACGTCT
GGCCCTTGCGGGTTTTCAATTTGGTTCAAATTCTTCGCAAAGATGTGCAT
AACATCGTGCCTTCATCGTGCCTGTGGCATCCATCGCGCGCATCTCTTGC
ACAAGATCGTTGCTCCAGGTGCGGGAGCGGCTCTCGTCCTCGACTTCATG
GGGTATGTTAGGGCCAACAACATTGTGCCATTGCGGCCGGTTTCGGTGTA
TACCATTCCTCTGCTAGCCTGGCACTGCTTCAGTTCGTTACCAACACCCT
TCTCGCCGAGCGGTCCCCCGGGATTCACATCCAGACCGCTCTGACACGCC
ACGAAGATGTTCAGGTGAATACTCAATGGCAGTGGGGGAAAGTGGTGTTG
GTATTGAGTGCTGTAATACGTGTAACAACATATTCGCCTGATTGAGAGCG
TAGCATCTGATTGAGAGCGAGATCGCGCGATACGCTGTAGCCGGACTACC
ACTGAGAGGTGGAGCTTGCTGTGTAGCTTGAATTGAAGGGCTAGCCCGTA
GCTTCAAGCCGCTACCCTGGTCATCCTGTGGGAGTCTCTCGTTGTGGAGC
TACAGCGGGGAGCAGAAGCTACAGCAGAGCCCACCGCCCGACGCGATACC
GCCCTGAAACAGTTTGAGCAGAAATAGCCAATCTGGGCAAATCTAGCAAC
TTGTCTAGCTCCTCGCTGCAGCATCCGATGACGATGACACGCATATGCTC
GCGAAGCTGCTGATGAGACCTTCAATTTGCACCGCTTCTTGGAATAGCCC
GTCCCCTACTTGCCAAGAAATGGCAAGAGGCGTCTGGACCCGAAATTTCA
ATTTTTTTGGCTCTCGCTCTCAATCAGATACTTCGCTCTCAATCAGGCGA
ATATGTTGTTGTGTGCGAATTGTAGTGTTCCGGGAACGACGCTTTTCCTC
GCAACGAAGTATCGGAGGGACTGCACGAGTGGTACACAGAGCACACCCAC
GGTGAAATTTCCCTGATGACCACAGACCACTCAGAGGTTCGCACATGAGA
TAGAGCCATGGGGTTGATCCCAAGCTTCCAGTAACACGGAGGCACGGGAA
CACGGCCTCTTGTCGATCCCACCACTCGCTAGACAGGCTGAACCCGGTGT
TTTTTGCGGCCATCTCACCCACCTTTATCAGTACTCACCTCTCTCGTGAA
CTATGATCATATCGACGGTTGCAAACCACAAACTGTTGGGGACCCTCAAC
CTTTGTCGGTCACACCTCATTTTGTGCCACAGCTCCTCTCCACTTTGGTG
AGTACGGACAGATCGTGTCGTTCGCGTAGACCGACGGCTTATCCGATGAC
CTACGCTGCTTCTGAAGGCTATGTGCGTCCTTACCATTGGAGAACTGGAA
TAATCTCCACCCGATACTCTCTTCACGAAAATGTTGCACAAGATTATTCA
TTCCTCGCTGGGCTTCTTCGTTCGCAGATTGTTGGTGACACCAGCGGCCC
CGAGCCTGAGCTGGTCATGGGTCACCTGGACATCAAGGTGAGCGATCAAC
CTTCCGTTCCATACATCCACTGCTTGTAGTGAGTATTAATGGACAATAGT
ACGTTCTTGCCAGACGCCACGTTCTCATGAGCCGGGGAATACGCCCACCG
TGTGCACGTGGAAACACGTACATATACCGACAGTGTTCTGGTCAAAATGA
CAGTATTGCATTATTTTGCGTTGACATTCCATCGTCAGCACGACACGACA
GATTCCAATTCTTTGTTCGCCGGCTACGTTCGACGGTACGACAAGTTTGT
GAACCCGCGCTGGCGGGCGTTGCCCCTGGTGTTCGCATGTTTGGTGCTTC
CTCAGACAATCATCGGTGAAGTTTCCCAAGAAACGGAGGTTTACTTCTGC
GGTGGTGGGGGCGTCAACGCGCCTCTTTGCGAGACGTGCGCTAGGCGTGG
CATCAAGTACGTCGGCAGATCCGTCCAGTGA
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Coding sequence (CDS) from alignment at Scaffold_420:166485..168815+

>EsuBft1227_3a-0001 ID=EsuBft1227_3a-0001|Name=EsuBft1227_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=621bp|location=Sequence derived from alignment at Scaffold_420:166485..168815+ (Ectocarpus subulatus male Bft15b)
ATGGGGCTCACATTCATCTTGAGCATCTTCCGTGACCCCGTAACTTCGAG
CATCCCCGAACTTGAGGCGGCTCAGCGGAACCCAACGTTTCAGCTTCGCA
CGTTCGGGCCCTACCGTTCAGAGTACGGCCGCCTGGTGGAGTTCCCACAC
TTGCCCCCCCTGCTGGGCCAACAACATTGTGCCATTGCGGCCGGTTTCGG
TGTATACCATTCCTCTGCTAGCCTGGCACTGCTTCAGTTCGTTACCAACA
CCCTTCTCGCCGAGCGGTCCCCCGGGATTCACATCCAGACCGCTCTGACA
CGCCACGAAGATGTTCAGATTGTTGGTGACACCAGCGGCCCCGAGCCTGA
GCTGGTCATGGGTCACCTGGACATCAAGCACGACACGACAGATTCCAATT
CTTTGTTCGCCGGCTACGTTCGACGGTACGACAAGTTTGTGAACCCGCGC
TGGCGGGCGTTGCCCCTGGTGTTCGCATGTTTGGTGCTTCCTCAGACAAT
CATCGGTGAAGTTTCCCAAGAAACGGAGGTTTACTTCTGCGGTGGTGGGG
GCGTCAACGCGCCTCTTTGCGAGACGTGCGCTAGGCGTGGCATCAAGTAC
GTCGGCAGATCCGTCCAGTGA
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