Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FZS4 |
| ProteomeId | EsuBft1040_8 |
| Protein domains | TRANSMEMBRANE |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | CYTOPLASMIC_DOMAIN |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 194 |
| Hectar predicted targeting category | other localisation |
| Evalue | 1.22e-43 |
| EggNOG OGs | 2D50F@1|root,2SWWM@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1040_8a-0001 ID=EsuBft1040_8a-0001|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1947bp|location=Sequence derived from alignment at Scaffold_420:428..3396- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGGTCGCCCAAAGGGTAAGCGCAAGCTGCCAAGGAACGCCGACGGCAC
GATTCGGAAGGCCCCTTCGCCCCCTGCGGACCCTGCTGTAGGCAACGACT
CTCCTCCCTCTTCCGACCATGAAGGCGCCAATATTTCTCCCATGCACACC
AACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGGCGAGCCAGG
TCGCGGGCAGGCGAAACTGCCGTTCGGTTCTGCGGTTCGCTCTGCAGCGA
GCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTGGCGCCCGAA
GTCGCGCCGCCTGCGCGAAAAAACGCGGTGCAACCTCTCCACCGGTCGAC
GCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACGCCGGGATGG
CGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAGCAGGAAGGG
CAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGTGGAGATGGA
TGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATGATGCCGAGA
AGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGTGGCGACAGC
AGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGGTGTTCCGCT
GGAAGATTGGTTTGGTGAGGATGACCAGGCTAGAGCTGCGAAGCTTCTTA
ATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCAAGCCGCGAC
CGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGACAAGGCTGA
TGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTGTGGGAGACA
CCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCCTCTAGCGGA
ACAAGTGGCGAGACCGTCCGAGAAAGTTCGAGGACGAACCTTTTGGACGG
GCTGTACGCCGACCCCGCCCGCGCACGAGACGAGACATGCGGCCGATGCA
GTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGAGCCAAGGGG
AGGTTTGCGGGGTTGAACAAAAAACGATTGAAGCACAGAAGGCGCGAGGA
GAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAAGCGCGAGAGC
GAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCAGAGAAGGCGG
GAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACCAGAAAGTGGT
GGACGCTATCGACAAGGCGGAGCAGTCCAACAGCTACAGCGGTATTGTGG
AGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCGTCCATCATGTGT
ACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGGAAGTGGAAACGCC
CAAGAAGCGCCGTGTGCTTGCTGCTTGCACTGCTGCATTTCTGCTCTTTG
AGATCGCCCTTGCCCTCTGGATTGAGGAAGGTGTCAACAAGATGCGGCAC
AGCCGCTACGTCGGAGATGTGGTGAAAACCACAGCGCAGACGGTGCGCAA
GTGGGTAAAGGAGTTCTGCCAAGACGGAAAATTTCTCATCAGAAAACGAC
TTTACGAGATAAGCCAGGCGGACTCCTTCATCGACCATGAGGACATCGCC
GAGCGTTGCCGGGAGGAAATCGACCGGCGGCTTTACCGCCGGAAGAAAAC
GGATCCGCGGTTTCGTGTCTCGGACTTTCAGAGGTGGGTGAACACTGTTC
TTCTGAAAGAAGTGTTTTCCGGCGGAGGAGGCATCTCTCGGACAACGGCG
CACAGCTGGATCTGCAGACTCGGCTTCAGGTGGAAGAAGAGCGGGAAGTG
CGTCTACGTCGATGGCCACAACCGCCCGGATGTCGTCGAGGCCCGGCGGG
AGTACGTGGCGAAGATGCTCATCCTGCGAAAGATGATGTCCATGTGA back to topprotein sequence of EsuBft1040_8a-0001 >EsuBft1040_8 ID=EsuBft1040_8|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=648bp
MGRPKGKRKLPRNADGTIRKAPSPPADPAVGNDSPPSSDHEGANISPMHT
NDHDDDWRDEDAGGEPGRGQAKLPFGSAVRSAASAAVSAAARTAMAVAPE
VAPPARKNAVQPLHRSTQHRHRRARWSKEDAGMAGSLAAWLKPPAQQQEG
QHGSPQIMETEGAVEMDVEVGDVGADSSDHDAEKICSPQEEHDRTSRGDS
SESETDMLVCSGVGVPLEDWFGEDDQARAAKLLNSSGEDSFLDALDASRD
RSRGPGELDGESGDKADDDVQPQDTGEAEAVGDTGETAAVGGAGHAASSG
TSGETVRESSRTNLLDGLYADPARARDETCGRCSGPGRGTRVASGDGAKG
RFAGLNKKRLKHRRREERKKTPEQRAREREARERARERTRERALKAQRRR
ENTPREKELLDIYQKVVDAIDKAEQSNSYSGIVEDPTEMLTESRLPSIMC
TALAIRAYAVLEEVETPKKRRVLAACTAAFLLFEIALALWIEEGVNKMRH
SRYVGDVVKTTAQTVRKWVKEFCQDGKFLIRKRLYEISQADSFIDHEDIA
ERCREEIDRRLYRRKKTDPRFRVSDFQRWVNTVLLKEVFSGGGGISRTTA
HSWICRLGFRWKKSGKCVYVDGHNRPDVVEARREYVAKMLILRKMMSM back to topmRNA from alignment at Scaffold_420:428..3396- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1040_8a-0001 ID=EsuBft1040_8a-0001|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2969bp|location=Sequence derived from alignment at Scaffold_420:428..3396- (Ectocarpus subulatus male Bft15b)
ATGGGTCGCCCAAAGGGTAAGCGCAAGCTGCCAAGGAACGCCGACGGCAC
GATTCGGAAGGCCCCTTCGCCCCCTGCGGACCCTGCTGTAGGCAACGACT
CTCCTCCCTCTTCCGACCATGAAGGCGCCAATATTTCTCCCATGCACACC
AACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGGCGAGCCAGG
TCGCGGGCAGGCGAAACTGCCGTTCGGTTCTGCGGTTCGCTCTGCAGCGA
GCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTGGCGCCCGAA
GTCGCGCCGCCTGCGCGAAAAAACGCGGTGCAACCTCTCCACCGGTCGAC
GCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACGCCGGGATGG
CGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAGCAGGAAGGG
CAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGTGGAGATGGA
TGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATGATGCCGAGA
AGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGTGGCGACAGC
AGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGGTGTTCCGCT
GGAAGATTGGTTTGGTGAGGATGACCAGGCTAGAGCTGCGAAGCTTCTTA
ATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCAAGCCGCGAC
CGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGACAAGGCTGA
TGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTGTGGGAGACA
CCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCCTCTAGCGGA
ACAAGTGGCGAGACCGTCCGAGAAAGTTCGAGGACGAACCTTTTGGACGG
GCTGTACGCCGACCCCGCCCGCGCACGAGACGAGACATGCGGCCGATGCA
GTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGAGCCAAGGGG
AGGTTTGCGGGGTTGAACAAAAAACGATTGAAGCACAGAAGGCGCGAGGA
GAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAAGCGCGAGAGC
GAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCAGAGAAGGCGG
GAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACCAGAAAGTGGT
GGACGCTATCGACAAGGTGAATAAGTATGCAATGTATTTCAGAGTGTTGC
GTGGTAGTGTTGTTGCCGTTGACTAGTTTGCTGCTAGCATACTGCTTCCC
TCGTGGCTGCTGTTTCCTTTATCCTGGATTTGTTGTGGAGCTGGTGCCAC
TGCCGAAACCATTCCTGCTTGTCTGTCAACAATAATTTGCAACTGTTGAA
TGCAACCATGTCCCTCAATCTGACGCCTTCCCGGTTTTGATTGCTTGAAT
TTCAATTTCTGTGCACACCTCCGTACAGGCGGAGCAGTCCAACAGCTACA
GCGGTATTGTGGAGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCG
TCCATCATGTGTACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGGA
AGTGGAAACGCCCAAGAAGCGCCGTGTGCTTGCTGCTTGCACTGCTGCAT
TTCTGCTCTTTGAGATCGCCCTTGCCCTCTGGTTCGTGGCGTGCTCTGTA
CATACATACAATGTTCCCTGGCGAAGTGGTTGCCGAGTAGCATGTGTAGC
TGGTACGTTTGGTGATTATCTGTTTGTTGCATTTTTGGACCCTCTTCCTA
TGTGTGACCGGGCGCACGGGGTACGTTGTGTATTTCTGCCATGCTCTCTT
CAGAGTCGTAACGCCGAAGGCTTGAAGAATATTCTTGTGTGTAGCACTCA
TCGTTCCCATGTTGACGCCGTTGCCTTCAGGATTGAGGAAGGTGTCAACA
AGATGCGGCACAGCCGCTACGTCGGAGATGTGGTGAAAACCACAGCGCAG
ACGGTGCGCAAGTGGGTAAAGGAGTTCTGCCAAGACGGAAAATTTCTCAT
CAGAAAACGACTTTACGAGATAAGCCAGGCGGACTCCTTCATCGACCATG
AGGACATCGCCGAGCGTTGCCGGGAGGAAATCGACCGGCGGCTTTACCGC
CGGAAGAAAACGGATCCGCGGTTTCGTGTCTCGGACTTTCAGAGGTAAGG
GGACGGACGTGAAAATGAGAGAGCGCGCGGTTAGTGTTCCTGTTGGGTTG
AACGGCGTTGGTTTTGTGTTCGTCTTCTGTGCGCCCGTGTGTTGTGGATA
CATGCGGACTAATTTCTCCAACTCTCTTCTGTTACCGCTTGCCTCTCCAC
TGCAAAATAGGTGGGTGAACACTGTTCTTCTGAAAGAAGTGTTTTCCGGC
GGAGGAGGCATCTCTCGGACAACGGCACACAGCTGGATCTGCAGACTCGG
CTTCAGGTGGAAGAAGAACGGGAAGNCGACCGGCGGCTTTACCGCCGGAA
GAAAACGGATCCGCGGTTTCGTGTCATGTACTTTCAGAGGTATGGGGACG
GACGTGAAAATGAGAGAGCGCGCGGTTAGTGTTCCTGTTGGGTTGAACGG
CGTTGGTTTTGTGTTCGTCTTGTGTGCGCCCGTGTGTTGTGGATACATGT
GGACTAATTTCTCCAACTCTCTTCTGTTACCGCTTTCCTCTCCACTGCAA
AATAGGTGGGTGAACACTGTTCTTCTGAAAGAAGTGTTTTCCGGCGGAGG
AGGCATCTCTCGGACAACGGCGCACAGCTGGATCTGCAGACTCGGCTTCA
GGTGGAAGAAGAGCGGGAAGTGCGTCTACGTCGATGGCCACAACCGCCCG
GATGTCGTCGAGGCCCGGCGGGAGTACGTGGCGAAGATGCTCATCCTGCG
AAAGATGATGTCCATGTGA back to topCoding sequence (CDS) from alignment at Scaffold_420:428..3396- >EsuBft1040_8a-0001 ID=EsuBft1040_8a-0001|Name=EsuBft1040_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1947bp|location=Sequence derived from alignment at Scaffold_420:428..3396- (Ectocarpus subulatus male Bft15b)
ATGGGTCGCCCAAAGGGTAAGCGCAAGCTGCCAAGGAACGCCGACGGCAC
GATTCGGAAGGCCCCTTCGCCCCCTGCGGACCCTGCTGTAGGCAACGACT
CTCCTCCCTCTTCCGACCATGAAGGCGCCAATATTTCTCCCATGCACACC
AACGACCACGACGACGACTGGCGCGATGAGGATGCGGGTGGCGAGCCAGG
TCGCGGGCAGGCGAAACTGCCGTTCGGTTCTGCGGTTCGCTCTGCAGCGA
GCGCTGCGGTGTCTGCAGCAGCTCGCACAGCAATGGCGGTGGCGCCCGAA
GTCGCGCCGCCTGCGCGAAAAAACGCGGTGCAACCTCTCCACCGGTCGAC
GCAGCATCGCCACAGGCGAGCGCGGTGGAGCAAGGAGGACGCCGGGATGG
CGGGGAGCTTGGCAGCATGGCTGAAGCCCCCAGCTCAGCAGCAGGAAGGG
CAGCATGGTTCGCCTCAAATTATGGAGACTGAAGGTGCGGTGGAGATGGA
TGTTGAGGTGGGAGATGTTGGTGCGGACAGCAGTGATCATGATGCCGAGA
AGATCTGCAGCCCGCAAGAAGAACATGACCGCACCAGCCGTGGCGACAGC
AGCGAGAGCGAGACCGACATGCTGGTATGTTCGGGTGTTGGTGTTCCGCT
GGAAGATTGGTTTGGTGAGGATGACCAGGCTAGAGCTGCGAAGCTTCTTA
ATTCCAGCGGCGAGGACAGTTTTCTCGACGCACTAGACGCAAGCCGCGAC
CGCTCTCGCGGCCCCGGCGAACTTGACGGAGAGAGCGGCGACAAGGCTGA
TGATGATGTTCAGCCTCAGGACACCGGCGAAGCAGAAGCTGTGGGAGACA
CCGGCGAAACAGCAGCTGTGGGAGGAGCCGGGCACGCAGCCTCTAGCGGA
ACAAGTGGCGAGACCGTCCGAGAAAGTTCGAGGACGAACCTTTTGGACGG
GCTGTACGCCGACCCCGCCCGCGCACGAGACGAGACATGCGGCCGATGCA
GTGGGCCTGGGCGAGGAACACGGGTGGCGTCGGGGGATGGAGCCAAGGGG
AGGTTTGCGGGGTTGAACAAAAAACGATTGAAGCACAGAAGGCGCGAGGA
GAGGAAGAAGACACCGGAACAACGAGCGCGAGAGCGAGAAGCGCGAGAGC
GAGCGCGAGAGCGAACGCGAGAGCGAGCACTCAAAGCGCAGAGAAGGCGG
GAGAACACGCCGCGAGAGAAGGAGCTCTTGGACATCTACCAGAAAGTGGT
GGACGCTATCGACAAGGCGGAGCAGTCCAACAGCTACAGCGGTATTGTGG
AGGACCCGACGGAAATGCTGACGGAATCTCGTCTCCCGTCCATCATGTGT
ACCGCCTTGGCGATTCGGGCGTACGCTGTCCTCGAGGAAGTGGAAACGCC
CAAGAAGCGCCGTGTGCTTGCTGCTTGCACTGCTGCATTTCTGCTCTTTG
AGATCGCCCTTGCCCTCTGGATTGAGGAAGGTGTCAACAAGATGCGGCAC
AGCCGCTACGTCGGAGATGTGGTGAAAACCACAGCGCAGACGGTGCGCAA
GTGGGTAAAGGAGTTCTGCCAAGACGGAAAATTTCTCATCAGAAAACGAC
TTTACGAGATAAGCCAGGCGGACTCCTTCATCGACCATGAGGACATCGCC
GAGCGTTGCCGGGAGGAAATCGACCGGCGGCTTTACCGCCGGAAGAAAAC
GGATCCGCGGTTTCGTGTCTCGGACTTTCAGAGGTGGGTGAACACTGTTC
TTCTGAAAGAAGTGTTTTCCGGCGGAGGAGGCATCTCTCGGACAACGGCG
CACAGCTGGATCTGCAGACTCGGCTTCAGGTGGAAGAAGAGCGGGAAGTG
CGTCTACGTCGATGGCCACAACCGCCCGGATGTCGTCGAGGCCCGGCGGG
AGTACGTGGCGAAGATGCTCATCCTGCGAAAGATGATGTCCATGTGA back to top
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