EsuBft574_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft574_8a-0001
Unique NameEsuBft574_8a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_417contigScaffold_417:52759..55728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft574_8
Protein domainsTMhelix
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsSignalP-TM
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length129
Hectar predicted targeting categorysignal anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft574_8aEsuBft574_8aEctocarpus subulatus male Bft15bgeneScaffold_417 52759..55728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_8a-0001EsuBft574_8Ectocarpus subulatus male Bft15bpolypeptideScaffold_417 52841..55020 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_8a-0001-exonagat-exon-88074Ectocarpus subulatus male Bft15bexonScaffold_417 52759..52894 +
EsuBft574_8a-0001-exonEsuBft574_8a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_417 53864..54036 +
EsuBft574_8a-0001-exonagat-exon-88075Ectocarpus subulatus male Bft15bexonScaffold_417 54747..55728 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_8a-0001-exonagat-five_prime_utr-11851Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_417 52759..52840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_8a-0001-cdsEsuBft574_8a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_417 52841..52894 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft574_8a-0001-exonagat-three_prime_utr-18615Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_417 55021..55728 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft574_8a-0001 ID=EsuBft574_8a-0001|Name=EsuBft574_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1291bp|location=Sequence derived from alignment at Scaffold_417:52759..55728+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTCTGGAAAGAGACTGCTGCTGTCTCCGTCACACCACGCATGACCTCAAC
GCTTGCCTGCTGCTCTCTTCGGTAGCGCCTCCATGACCCTCATCAGATCA
TGCCTGACCAGGCGAATCAGATTCGCAATGAACCAGGCGCTTCGACCAAC
CGTGACACCATCAACGAAAATATCAGCATTAACACCAACAGCAGCAGCTC
GTCCGATAGTTGGACCGGTCGGGAGCTTGGGCGGTCTCGTGAGCAGACGC
CACCTCCGCGTGACGCACACGCCCCCCCAGACGCCTCCGATGCCGCCGAT
GGACCTCAGGTACAACTACGCTGCCGGCGTTTTCATCGTGGTCCTCTTCA
CGTGGGCGGCGCTTAGCCCGGAAGACGACGGTTTCAACACCCTGCTAGGC
GGGAGTGGCATGAACAAGGACGAGGACGAGGACGAGGACGACGACGACGA
CGAGCGCTACGACGGGACCGGCTACGAAGGCAGAGACAAAGCCCTTTCCG
GTGGCGGCGGTGGTGGAGATGACGCGTCTAGGGCGTCTAGGGCGTCAAGT
AGTAGCGGTGATCGGCCTGTCGTGAGGGATTGATGTTTTGCCCTGTAATA
ACACGTTTCGAGTGGGGATTATTCCTCCTGGACTTTCTGTATTAGTACGC
CAGAGCATAGCCAGGCCTTGCTCTGCAGTGGTCAGTGCATGGGTTGTTCC
ATGTGGAAGGAATTGTTAAAACTGGGTGGTGGCACTACAGCTGGTGTTCT
GTAGTGTTTTATTTTGCGGTTCAGATCGAGCGACAGAGCCCGATAGAACG
CACTTACGTACCTCGGGGCGGGGGCGTGAAAGCTGCGGCTTACGAAAAGT
AGTTCGGTACACGTTCGACCTTGGTGACGACGGAGGCCGAACGAAAAGTG
CACAAGGTTTAGGAGAGCAAGTAGCCCATACCGCGCCACATGTGGCCATG
TCCTCCTCACCAGGATGACGTGGCCATGTCCTAACGGCCTGGTTGCGATG
AACCAGAGGTTGTATGGAGTTAGCAAATACACCAGAGAGACCCAAGCCCG
TCCCGCACGAGAGAAATGACCGCGGGATTCTCACAGCGGCGTTCTAGTCA
ATTTCGAGAGCTCTCGCTAAAGCTTTTGAATGCTAAATCCTATGCACATG
TCCCATGCAGAGTCCTCGAATACTCTGTCCGTGTTTGCGATGCGCTGTGC
GCATGTGAAACTGCAGTCCAATGCAGCTTGAATCATGAGATAAAATATGG
CCCCGATGTAAGCAAAACATGTAAGCACACGTCCAACAGCT
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protein sequence of EsuBft574_8a-0001

>EsuBft574_8 ID=EsuBft574_8|Name=EsuBft574_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=166bp
MTLIRSCLTRRIRFAMNQALRPTVTPSTKISALTPTAAARPIVGPVGSLG
GLVSRRHLRVTHTPPQTPPMPPMDLRYNYAAGVFIVVLFTWAALSPEDDG
FNTLLGGSGMNKDEDEDEDDDDDERYDGTGYEGRDKALSGGGGGGDDASR
ASRASSSSGDRPVVRD
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mRNA from alignment at Scaffold_417:52759..55728+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft574_8a-0001 ID=EsuBft574_8a-0001|Name=EsuBft574_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2970bp|location=Sequence derived from alignment at Scaffold_417:52759..55728+ (Ectocarpus subulatus male Bft15b)
GTCTGGAAAGAGACTGCTGCTGTCTCCGTCACACCACGCATGACCTCAAC
GCTTGCCTGCTGCTCTCTTCGGTAGCGCCTCCATGACCCTCATCAGATCA
TGCCTGACCAGGCGAATCAGATTCGCAATGAACCAGGTGCGCAATCGTAG
CTGCTGCTGCGAGAAGCAGCAAGTACGATTGGTGTGAAGTCGCTGAGGGT
CGTATTGCGTCCTGTACATCAGCATAGCGTACCGAGCGGAGTCAGCGCTG
ACTGATTGGCGCAGCATTGGGAATTTCTGGCTGAATGCTGTTCCGGCGTG
CTCCGATCATGTGGGGTTCCTCTACGCCACCAATGTATCTCCATGTTTTG
TCTGCTGTCTACCTACCGTGCTGAGTACTGATGATGGCCAAGCAACACTT
AATTTTCCTCCAAGTGTGCACGGCCTACGGTGCATGGGCACACCGGTCAA
CGTTCGTTGCCAGAGGTGCACGAACTTATATTTCCGGCGCGATTCACATG
AAGCGAATTAATTAAAGTTTACTATCCTGAATTAGTAGTTTCCGCTTCTG
CTGGATGTGATTTACAGCAATAACCACGTCCCGTAGGTAGCAGCAGTGTA
ATCATGTTCACCTACCAGCAGTGCATCCGCGAAAACCTCGGTCCATGTGG
CTGCAACAGCTAGGCTTTTCATCTCCGACTGTTCCAACTGCGAGTAACAC
ACGGCCTATTGAGTGGTTATGGCTTCGTGTTTGTGTCACGTCTGCAGGAT
GACACAACCCACCCCTGGTTGCTACAGATGGTGCCCGCACTTAAGAACCT
TTAGTTTCGGCCGAGGCTGGGGTTCTTATTTTGCTGATAATCCTCTTGTG
GGCTACAAATGGCCGCTATACAGGTTTTATTACAATGTGGGGTTCTTAAC
CGAGCTCACAAACGGTGCTCAAGTTCTTAGCTTCTGATTTTTCGCGAGTC
TCAATTTCTCAACTGCTAAGTTCTTAAGTGCGGGCGCTATCTGTACGGCT
GCCCTTCTTCACCATTCGACGAACGGCAGCAACGAATCAACCCCCGCCTC
CCCCGCGTCGCGCGCTGCTGCCGAAAATCTCACCACCGTCGCCGCTCTAC
AGCAGGCGCTTCGACCAACCGTGACACCATCAACGAAAATATCAGCATTA
ACACCAACAGCAGCAGCTCGTCCGATAGTTGGACCGGTCGGGAGCTTGGG
CGGTCTCGTGAGCAGACGCCACCTCCGCGTGACGCACACGCCCCCCCAGA
CGCCTCCGATGCCGCCGATGGACCTCAGGTACATACACAATGCGGCAAAA
TCTTCAGCCCAACGCAACGCAAATTTGAAAAGACTGCCCTGTGCCATGTC
GATGCTCTGCTGCTCCTAATTCCGCCAACAAAAAGTCATGATCGTGTGGT
GGTCATGGCGATACTTGTCAGAGTATGCAAAGGCTCGAAATGGAAGTCTG
TTAATCGTCTATCTCTATTTTACGTCTGCCTCCCCATGGCCGCGATGGAC
ATATTTATTGCCAGTGACACAACCACCTGGGGGGGGATTCGCTAGCCACA
TAGCAAAGAATACCTTGCTCATCGCAGGCTACTGTTACCTTTTCAGCTGA
TATGAACTACTCGCATGTGGCCGGCAGCCTGAGAGCGTTTCTCGTGTGGG
AGAGCGTGATTATTGTTGCTGTCGTTGGTGTTGTTGTCTTCACATTATTA
TACCGTCCCGGTCTCTGCTCAGTTTTTCACGTACGTGCCGGTCCATCGGA
CTCGGACGTACGTTACTGGTATTTCCAATGCTTACGTTGCAGTATACTCT
AGCACCGTCAGTCAAGTGCACTATGGTGCAGAAAACAATCACGCAGGTCA
AGGTCAATTAAGTCACAGAAATAGATATATCGGCGGAAGTCTCGCACTGA
GCCAGGCCCACGGTGAATCACACGCAAGTCCATTAATAGAACGTGTTCAA
ACTACATGTTGTGTTTCCTCGCCACCCATGGCATCAAGGTACAACTACGC
TGCCGGCGTTTTCATCGTGGTCCTCTTCACGTGGGCGGCGCTTAGCCCGG
AAGACGACGGTTTCAACACCCTGCTAGGCGGGAGTGGCATGAACAAGGAC
GAGGACGAGGACGAGGACGACGACGACGACGAGCGCTACGACGGGACCGG
CTACGAAGGCAGAGACAAAGCCCTTTCCGGTGGCGGCGGTGGTGGAGATG
ACGCGTCTAGGGCGTCTAGGGCGTCAAGTAGTAGCGGTGATCGGCCTGTC
GTGAGGGATTGATGTTTTGCCCTGTAATAACACGTTTCGAGTGGGGATTA
TTCCTCCTGGACTTTCTGTATTAGTACGCCAGAGCATAGCCAGGCCTTGC
TCTGCAGTGGTCAGTGCATGGGTTGTTCCATGTGGAAGGAATTGTTAAAA
CTGGGTGGTGGCACTACAGCTGGTGTTCTGTAGTGTTTTATTTTGCGGTT
CAGATCGAGCGACAGAGCCCGATAGAACGCACTTACGTACCTCGGGGCGG
GGGCGTGAAAGCTGCGGCTTACGAAAAGTAGTTCGGTACACGTTCGACCT
TGGTGACGACGGAGGCCGAACGAAAAGTGCACAAGGTTTAGGAGAGCAAG
TAGCCCATACCGCGCCACATGTGGCCATGTCCTCCTCACCAGGATGACGT
GGCCATGTCCTAACGGCCTGGTTGCGATGAACCAGAGGTTGTATGGAGTT
AGCAAATACACCAGAGAGACCCAAGCCCGTCCCGCACGAGAGAAATGACC
GCGGGATTCTCACAGCGGCGTTCTAGTCAATTTCGAGAGCTCTCGCTAAA
GCTTTTGAATGCTAAATCCTATGCACATGTCCCATGCAGAGTCCTCGAAT
ACTCTGTCCGTGTTTGCGATGCGCTGTGCGCATGTGAAACTGCAGTCCAA
TGCAGCTTGAATCATGAGATAAAATATGGCCCCGATGTAAGCAAAACATG
TAAGCACACGTCCAACAGCT
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Coding sequence (CDS) from alignment at Scaffold_417:52759..55728+

>EsuBft574_8a-0001 ID=EsuBft574_8a-0001|Name=EsuBft574_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=501bp|location=Sequence derived from alignment at Scaffold_417:52759..55728+ (Ectocarpus subulatus male Bft15b)
ATGACCCTCATCAGATCATGCCTGACCAGGCGAATCAGATTCGCAATGAA
CCAGGCGCTTCGACCAACCGTGACACCATCAACGAAAATATCAGCATTAA
CACCAACAGCAGCAGCTCGTCCGATAGTTGGACCGGTCGGGAGCTTGGGC
GGTCTCGTGAGCAGACGCCACCTCCGCGTGACGCACACGCCCCCCCAGAC
GCCTCCGATGCCGCCGATGGACCTCAGGTACAACTACGCTGCCGGCGTTT
TCATCGTGGTCCTCTTCACGTGGGCGGCGCTTAGCCCGGAAGACGACGGT
TTCAACACCCTGCTAGGCGGGAGTGGCATGAACAAGGACGAGGACGAGGA
CGAGGACGACGACGACGACGAGCGCTACGACGGGACCGGCTACGAAGGCA
GAGACAAAGCCCTTTCCGGTGGCGGCGGTGGTGGAGATGACGCGTCTAGG
GCGTCTAGGGCGTCAAGTAGTAGCGGTGATCGGCCTGTCGTGAGGGATTG
A
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