EsuBft1080_8a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1080_8a-0001
Unique Name	EsuBft1080_8a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_412	contig	Scaffold_412:448293..449598 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft1080_8
Protein domains	SignalP-TM
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	130
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-22_000870.3
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_8a	EsuBft1080_8a	Ectocarpus subulatus male Bft15b	gene	Scaffold_412 448293..449598 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_8a-0001-exon	EsuBft1080_8a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_412 448293..449598 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_8a-0001-exon	agat-five_prime_utr-486	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_412 448293..448580 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_8a-0001-cds	EsuBft1080_8a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_412 448581..448910 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_8a-0001-exon	agat-three_prime_utr-761	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_412 448911..449598 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1080_8a-0001	EsuBft1080_8	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_412 448581..448910 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_412:448293..449598+
coding sequence from alignment at Scaffold_412:448293..449598+

spliced messenger RNA

>EsuBft1080_8a-0001 ID=EsuBft1080_8a-0001|Name=EsuBft1080_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1306bp|location=Sequence derived from alignment at Scaffold_412:448293..449598+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
GTATACATATCGTCGAACAGGTATGTACGGCATGCTGTCGTCGCGATCCA
AGAATCGGTATCACTGCCGTACTCTGTGCCCCTTTCCCTATTACCGTAGT
TTGCGACCCTGGGGGGTATTGTTGAAATCGAAGGGTCGCCGTGTACGAAA
ACCGCCGTGTTGCACCATCCACTACACCAGAATAGTGCCATTCATACTTG
CCGCCACACGCCAGATTTTTCTAATTTTCGCATTGTGCTGTCTGCCGCTT
CTCCGTTGCTTCTCGCCTGCGTCATATATCATTCTTACATGTTCCCGCCA
TTTTTTCGCTCTCGCAGCAAAAGCATGGCGCGCAATTGCACCGCGCTTGC
TGCTGAGCACGATGTTACGGCAGGGTTTGTTGACCTCGGTATAGACGATC
TGGATGCCCACACGACTTTCAGCAAGAATCCGAATGCCACGGCCTTGAAC
GCGTTCATCGACTACCTGTATCTGATGGACTCTTCCGTCATTATCCAAAC
CGGATCGTCGTTCTCCTCCACAGTTGCACGTGTGAAGAGCTTGAAGTGCA
GAGAGGTAGAACACCCTCCAGAATTGCCTGTCAAAAGACTGAACGTGTGT
TTGCCACATGACTGCTAGGCGTTCGGAGTGGCACCGACACCTCGGAACTC
GTCCGTGTTGCCGCGCCTGTGTTTCATGGACAGTCCAACCGTCCGATTGG
AAATTGCCGTTGCTGGCTTTAGGGCCGTCAAAACACGCAAGGCAACCGTG
ATGTGCTTTTGCTTCGGCCACATGTGGGCAATGCATTTGACGTGTAACTC
AAGGAGCGTTTTGGTGGATTTACAACAAGTATTTGTTGTAGGAGCTTCGT
GGGATTGGATCAATACCATGTCGGGGAAATTGACGTGTCCATATGCACAG
TAGCCCAGTATGTCAGGGATATTTTAACCGAAACTGATGGTACGACTGTC
TATCCCGTCTTGGTTCGTTGTCAGTAACGCAATCTGTGGACGGTGTCATC
GGCAATGCTCATCGTACTGACCCGCAGCAATAGCATTAGATGAATTTGCC
AGAAGCGTTGAGTGTTGAAAAGCGAGCTTCCGGAGATATTCTAGGATGGT
TGGAACAAGGAACATTATTTTCTGGAAGTTCGAGAACAGATGTTCTCAAA
TTGAAAATAGTGTTGTCAGTCAGCGCCATCCCCGAAAAAAAATAAAAAAT
CTTTGATCAAGTGAGCCGTGTCACCCAATTCAACTTTCAGATCAAGGGAT
GCGTGTGACCGAAATGTAGACTGCTCATATACCAAATGATCCATCTAATC
GAAATC

protein sequence of EsuBft1080_8a-0001

>EsuBft1080_8 ID=EsuBft1080_8|Name=EsuBft1080_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=109bp
MFPPFFRSRSKSMARNCTALAAEHDVTAGFVDLGIDDLDAHTTFSKNPNA
TALNAFIDYLYLMDSSVIIQTGSSFSSTVARVKSLKCREVEHPPELPVKR
LNVCLPHDC

mRNA from alignment at Scaffold_412:448293..449598+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1080_8a-0001 ID=EsuBft1080_8a-0001|Name=EsuBft1080_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1306bp|location=Sequence derived from alignment at Scaffold_412:448293..449598+ (Ectocarpus subulatus male Bft15b)
GTATACATATCGTCGAACAGGTATGTACGGCATGCTGTCGTCGCGATCCA
AGAATCGGTATCACTGCCGTACTCTGTGCCCCTTTCCCTATTACCGTAGT
TTGCGACCCTGGGGGGTATTGTTGAAATCGAAGGGTCGCCGTGTACGAAA
ACCGCCGTGTTGCACCATCCACTACACCAGAATAGTGCCATTCATACTTG
CCGCCACACGCCAGATTTTTCTAATTTTCGCATTGTGCTGTCTGCCGCTT
CTCCGTTGCTTCTCGCCTGCGTCATATATCATTCTTACATGTTCCCGCCA
TTTTTTCGCTCTCGCAGCAAAAGCATGGCGCGCAATTGCACCGCGCTTGC
TGCTGAGCACGATGTTACGGCAGGGTTTGTTGACCTCGGTATAGACGATC
TGGATGCCCACACGACTTTCAGCAAGAATCCGAATGCCACGGCCTTGAAC
GCGTTCATCGACTACCTGTATCTGATGGACTCTTCCGTCATTATCCAAAC
CGGATCGTCGTTCTCCTCCACAGTTGCACGTGTGAAGAGCTTGAAGTGCA
GAGAGGTAGAACACCCTCCAGAATTGCCTGTCAAAAGACTGAACGTGTGT
TTGCCACATGACTGCTAGGCGTTCGGAGTGGCACCGACACCTCGGAACTC
GTCCGTGTTGCCGCGCCTGTGTTTCATGGACAGTCCAACCGTCCGATTGG
AAATTGCCGTTGCTGGCTTTAGGGCCGTCAAAACACGCAAGGCAACCGTG
ATGTGCTTTTGCTTCGGCCACATGTGGGCAATGCATTTGACGTGTAACTC
AAGGAGCGTTTTGGTGGATTTACAACAAGTATTTGTTGTAGGAGCTTCGT
GGGATTGGATCAATACCATGTCGGGGAAATTGACGTGTCCATATGCACAG
TAGCCCAGTATGTCAGGGATATTTTAACCGAAACTGATGGTACGACTGTC
TATCCCGTCTTGGTTCGTTGTCAGTAACGCAATCTGTGGACGGTGTCATC
GGCAATGCTCATCGTACTGACCCGCAGCAATAGCATTAGATGAATTTGCC
AGAAGCGTTGAGTGTTGAAAAGCGAGCTTCCGGAGATATTCTAGGATGGT
TGGAACAAGGAACATTATTTTCTGGAAGTTCGAGAACAGATGTTCTCAAA
TTGAAAATAGTGTTGTCAGTCAGCGCCATCCCCGAAAAAAAATAAAAAAT
CTTTGATCAAGTGAGCCGTGTCACCCAATTCAACTTTCAGATCAAGGGAT
GCGTGTGACCGAAATGTAGACTGCTCATATACCAAATGATCCATCTAATC
GAAATC

Coding sequence (CDS) from alignment at Scaffold_412:448293..449598+

>EsuBft1080_8a-0001 ID=EsuBft1080_8a-0001|Name=EsuBft1080_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=330bp|location=Sequence derived from alignment at Scaffold_412:448293..449598+ (Ectocarpus subulatus male Bft15b)
ATGTTCCCGCCATTTTTTCGCTCTCGCAGCAAAAGCATGGCGCGCAATTG
CACCGCGCTTGCTGCTGAGCACGATGTTACGGCAGGGTTTGTTGACCTCG
GTATAGACGATCTGGATGCCCACACGACTTTCAGCAAGAATCCGAATGCC
ACGGCCTTGAACGCGTTCATCGACTACCTGTATCTGATGGACTCTTCCGT
CATTATCCAAACCGGATCGTCGTTCTCCTCCACAGTTGCACGTGTGAAGA
GCTTGAAGTGCAGAGAGGTAGAACACCCTCCAGAATTGCCTGTCAAAAGA
CTGAACGTGTGTTTGCCACATGACTGCTAG