EsuBft2084_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2084_4a-0001
Unique Name	EsuBft2084_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_129	contig	Scaffold_129:530596..533436 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft2084_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	272
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_4a	EsuBft2084_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_129 530596..533436 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_4a-0001-exon	EsuBft2084_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 530596..532718 -
EsuBft2084_4a-0001-exon	agat-exon-39746	Ectocarpus subulatus male Bft15b	exon	Scaffold_129 532835..533436 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_4a-0001-exon	agat-three_prime_utr-8110	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_129 530596..532578 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_4a-0001-cds	EsuBft2084_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_129 532579..532718 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_4a-0001-exon	agat-five_prime_utr-5268	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_129 533433..533436 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2084_4a-0001	EsuBft2084_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_129 532579..533432 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_129:530596..533436-
coding sequence from alignment at Scaffold_129:530596..533436-

spliced messenger RNA

>EsuBft2084_4a-0001 ID=EsuBft2084_4a-0001|Name=EsuBft2084_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2725bp|location=Sequence derived from alignment at Scaffold_129:530596..533436- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ACTGATGGACGTGGACATGGAGTTGGACCGCCGCGTGGAGGCCCTTTTCG
AGCTTATAGGGTACCTGGCGTCTTGTATCTTGGACCCTGCTGACCGCGAA
GCCCGGTTTAGGACTTCTAGGATAACGGCGCACCTGGCCGGCATGGCGAC
CGCAGTTCGGCTCTACTTCGCGGCGAACGGGCTCTTGACACGGGGGTGGC
GGTTCCGCGAGGCATTCATGCGGGCATTCAACACGGACCTCGAGGAGTGG
ACCGCAGCAGTAACTGCGAGGGCGCTGGCGGAGCAGGCGAAAGCCGGGGG
TGGGGGGATACCGGNGTTCCGCGAGGCATTCATGCGGGCATACAACACGG
ACCTCGAGGAGTGGACCGCAGCAGTAACTGCGAGGGCGCTGGCGGAACAG
GAGAAAGCCGGGGGTGGGGGGATACCGGGCGGGATGCAGTTGGGGGAGAT
CCCGATGCCGCAGTTCACCCACACATACCTCCTCATGCCGCTGGCACCGC
TGGTGCCGGCATTCGGCGTGGGAGGGGACGGTCGGAGCGGAGGCGGGGGC
AGCGGATGGNAATATCGGAAGGGCTACGCGTGCCGGTACCGGCACACCGG
CGGCGGGGCCGACGGGGGCAGGGGAGGTTACAGGATGGGGCGAGGGCGCG
AGCGGGGAGTGGGTCATGGGCGCGGATACGGGGCCGGTGCCGGCGTCGGT
GTCGTCTGGAGCAGCAGGTACAGCATCGGGTGGCGCGGCTGAGAGAAAAA
CAAGGTGGCGAGCAGCGCTATCGAGGCCACGGAAAACGAAAACCGGGTCA
CCGAAACAATTGAAATTGATGACGGTGTTGGCCGATATGGCGTGGGCCGT
GTTGTCTGAGAGTTTGGCCCCCGTATCCGCCCCGTGCCCTTTCCCCCCCA
ATGTACAAACTGAACCAGCGAGTGAATCCCTTTTGAGTGCCGCCCCCCCG
AAGGAAGAGATGATAGATGCTAGCGGAGGTGGTATCGGACGTGTCGTGCA
AAGTCTGGGTGGACGTTTGTTGGCGCCTCATATGGATGCGAAAAAAATTG
CCAGAAGTGTTGGGAGCTTTGAACACGTAGACGTGCTGGTAAAAATCGCA
CAAATGGGGGTACCCATCGCAGTAAGACCGGGGGGAGACCTGAAGCATGA
GATAGCGTACGGAAATCATCCGAACGCGCAAAAATGGCACGGAGCGATTT
GGCAGAAGGTGGTGGAGGATGTACAAGCAGGCAGGGCGGTGCTGTTCAGG
AGAGAAGTTGCAGAAAAAAATCCAGGTTTGCGCGTGTCCCCGGTCGGGGT
GGTGGAGGAGAAAGAGAAACTTCGGGTGATACACGACCTGACTATACCAG
TAGCGGAAGCAACGGGGGGGGAAGGGCGGCCGGTAAATACCACCACTTTT
TTAAAAGAAATTCCGGCGTGCGGGATCGCGACTGTAATGAAGGAGGCGTT
ATAACGGTTCCTGGGGCTGAAAGCTAGGCATCCAAGGAGGACGATTTTGT
TGCAAAAGTGGACGTCAAAAGCGCGTTTCGCCAAATTCCAGTAGACCCGG
CAGGGGCGCCGGCTTTCGGATATGTGGTAGGGAAATTCCTGGAAGAAGAC
CTTCGGTTGCAGTTCGGATGGCGGGGCAGTCCTGGGTGGTGGGGGTTGGT
GGCGTCGGCGATAGAACACGTACACCGACAGACGACGAGAGACATAGCAC
GGGTAACGCATTCCGGGGTACGGGCAGCGGCACACTTAAAGATCGCTCCG
CCAACGGGGAAAGCGATAGTGCCGATTCCACCGCAATGCAAGGTGCAGCC
GGCGGTAGGAGGGGGGAAGAATGATCCGGCGTTTGTGCGGTTTTTCGTGG
ATGGTGCGATTAGCGTGGAAGTGCAGTGGGAAGACCAGGGGGAGCGGTGT
CTGGAGTTGACGAAGGGGCTTGCGTCCACCCACCATGTATTATAAGGGGA
GAGGGATGAGAAGAAGGAGCCACTACCGCCCGCAAAGAAGATGACAGACT
GGAGGACGGAACATGTGGTGTTGGGGTGGTTGGTGGATACCGAGGCAGGG
ACGATCTCATTGCCGGAATAGAAAGTGCAGGATTTGAGAGAGAGAATAAT
GGAATGGCCAGAGCACAGGAAGCAGGCTACCGTGCGCGAGGTATTGGTGT
TGGCAGGTAAGCTGCGCCACGCGGCCTTCGCTATCCGGCCCGGCCGTTAC
TTCGTACTCAGGCTTCTGCAGCTTGCCGGGCTGCATCTAAATGGGGTGGA
ACGGGCCGGAGGGGGGGACGCGTGGGGCAGACATAGGAAGAAGGCGCATG
CACGCAAGTTAGTGAAGCTGACATGGGAGTTTATGGCAGAGGTGGGGTGG
TGGCGGTGGTATCTAGTGGGAGGGGTGGGGGAGGTGGGCAGTAAGATAAC
GGCGGCGTCGTTCAGCTTTGCCAAGCAAGTTCCGTCGAGGAGCTGGTTTT
CGGATGCGTCAACGAGGGCATCGGGGGGGAGTTCGCATGGAAACGAGGGT
GTTCTGGAGGTACGAGTTGCCGGAGGAGGTACAAGGAAGGACGATCAGGG
CGAGGCAAAAAGGAGAAGGGGACTTTACATGCATAAATGTACTAGAAGTA
ATGGCGATGGTGATGACGGCGTATGTGATGGTTGTTTCGAGGGGGGATAA
GCCGGAGCGGGAAGGAGAGGCGGTGATGATGAGGGCGGACAATGAGAGCG
CTGTGTCGTGGATGAAGAAGTGTGT

protein sequence of EsuBft2084_4a-0001

>EsuBft2084_4 ID=EsuBft2084_4|Name=EsuBft2084_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=245bp
MDVDMELDRRVEALFELIGYLASCILDPADREARFRTSRITAHLAGMATA
VRLYFAANGLLTRGWRFREAFMRAFNTDLEEWTAAVTARALAEQAKAGGG
GIPXFREAFMRAYNTDLEEWTAAVTARALAEQEKAGGGGIPGGMQLGEIP
MPQFTHTYLLMPLAPLVPAFGVGGDGRSGGGGSGWXYRKGYACRYRHTGG
GADGGRGGYRMGRGRERGVGHGRGYGAGAGVGVVWSSRYSIGWRG

mRNA from alignment at Scaffold_129:530596..533436-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2084_4a-0001 ID=EsuBft2084_4a-0001|Name=EsuBft2084_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2841bp|location=Sequence derived from alignment at Scaffold_129:530596..533436- (Ectocarpus subulatus male Bft15b)
ACTGATGGACGTGGACATGGAGTTGGACCGCCGCGTGGAGGCCCTTTTCG
AGCTTATAGGGTACCTGGCGTCTTGTATCTTGGACCCTGCTGACCGCGAA
GCCCGGTTTAGGACTTCTAGGATAACGGCGCACCTGGCCGGCATGGCGAC
CGCAGTTCGGCTCTACTTCGCGGCGAACGGGCTCTTGACACGGGGGTGGC
GGTTCCGCGAGGCATTCATGCGGGCATTCAACACGGACCTCGAGGAGTGG
ACCGCAGCAGTAACTGCGAGGGCGCTGGCGGAGCAGGCGAAAGCCGGGGG
TGGGGGGATACCGGNGTTCCGCGAGGCATTCATGCGGGCATACAACACGG
ACCTCGAGGAGTGGACCGCAGCAGTAACTGCGAGGGCGCTGGCGGAACAG
GAGAAAGCCGGGGGTGGGGGGATACCGGGCGGGATGCAGTTGGGGGAGAT
CCCGATGCCGCAGTTCACCCACACATACCTCCTCATGCCGCTGGCACCGC
TGGTGCCGGCATTCGGCGTGGGAGGGGACGGTCGGAGCGGAGGCGGGGGC
AGCGGATGGNAATATCGGAAGGGCTACGCGTGCCGGTACCGGCACACCGG
CGGTAACAACAACGGCGAAGGCATCATCCCCAGGCTCGGCGGCGCCAAGA
AGAGTGGGGGGGCAGACGCCGAAGGGGAGCCCGCCGCGAAAAAATGAGAG
CGCGGGCTCCGCAGGCAGGCGGGGCCGACGGGGGCAGGGGAGGTTACAGG
ATGGGGCGAGGGCGCGAGCGGGGAGTGGGTCATGGGCGCGGATACGGGGC
CGGTGCCGGCGTCGGTGTCGTCTGGAGCAGCAGGTACAGCATCGGGTGGC
GCGGCTGAGAGAAAAACAAGGTGGCGAGCAGCGCTATCGAGGCCACGGAA
AACGAAAACCGGGTCACCGAAACAATTGAAATTGATGACGGTGTTGGCCG
ATATGGCGTGGGCCGTGTTGTCTGAGAGTTTGGCCCCCGTATCCGCCCCG
TGCCCTTTCCCCCCCAATGTACAAACTGAACCAGCGAGTGAATCCCTTTT
GAGTGCCGCCCCCCCGAAGGAAGAGATGATAGATGCTAGCGGAGGTGGTA
TCGGACGTGTCGTGCAAAGTCTGGGTGGACGTTTGTTGGCGCCTCATATG
GATGCGAAAAAAATTGCCAGAAGTGTTGGGAGCTTTGAACACGTAGACGT
GCTGGTAAAAATCGCACAAATGGGGGTACCCATCGCAGTAAGACCGGGGG
GAGACCTGAAGCATGAGATAGCGTACGGAAATCATCCGAACGCGCAAAAA
TGGCACGGAGCGATTTGGCAGAAGGTGGTGGAGGATGTACAAGCAGGCAG
GGCGGTGCTGTTCAGGAGAGAAGTTGCAGAAAAAAATCCAGGTTTGCGCG
TGTCCCCGGTCGGGGTGGTGGAGGAGAAAGAGAAACTTCGGGTGATACAC
GACCTGACTATACCAGTAGCGGAAGCAACGGGGGGGGAAGGGCGGCCGGT
AAATACCACCACTTTTTTAAAAGAAATTCCGGCGTGCGGGATCGCGACTG
TAATGAAGGAGGCGTTATAACGGTTCCTGGGGCTGAAAGCTAGGCATCCA
AGGAGGACGATTTTGTTGCAAAAGTGGACGTCAAAAGCGCGTTTCGCCAA
ATTCCAGTAGACCCGGCAGGGGCGCCGGCTTTCGGATATGTGGTAGGGAA
ATTCCTGGAAGAAGACCTTCGGTTGCAGTTCGGATGGCGGGGCAGTCCTG
GGTGGTGGGGGTTGGTGGCGTCGGCGATAGAACACGTACACCGACAGACG
ACGAGAGACATAGCACGGGTAACGCATTCCGGGGTACGGGCAGCGGCACA
CTTAAAGATCGCTCCGCCAACGGGGAAAGCGATAGTGCCGATTCCACCGC
AATGCAAGGTGCAGCCGGCGGTAGGAGGGGGGAAGAATGATCCGGCGTTT
GTGCGGTTTTTCGTGGATGGTGCGATTAGCGTGGAAGTGCAGTGGGAAGA
CCAGGGGGAGCGGTGTCTGGAGTTGACGAAGGGGCTTGCGTCCACCCACC
ATGTATTATAAGGGGAGAGGGATGAGAAGAAGGAGCCACTACCGCCCGCA
AAGAAGATGACAGACTGGAGGACGGAACATGTGGTGTTGGGGTGGTTGGT
GGATACCGAGGCAGGGACGATCTCATTGCCGGAATAGAAAGTGCAGGATT
TGAGAGAGAGAATAATGGAATGGCCAGAGCACAGGAAGCAGGCTACCGTG
CGCGAGGTATTGGTGTTGGCAGGTAAGCTGCGCCACGCGGCCTTCGCTAT
CCGGCCCGGCCGTTACTTCGTACTCAGGCTTCTGCAGCTTGCCGGGCTGC
ATCTAAATGGGGTGGAACGGGCCGGAGGGGGGGACGCGTGGGGCAGACAT
AGGAAGAAGGCGCATGCACGCAAGTTAGTGAAGCTGACATGGGAGTTTAT
GGCAGAGGTGGGGTGGTGGCGGTGGTATCTAGTGGGAGGGGTGGGGGAGG
TGGGCAGTAAGATAACGGCGGCGTCGTTCAGCTTTGCCAAGCAAGTTCCG
TCGAGGAGCTGGTTTTCGGATGCGTCAACGAGGGCATCGGGGGGGAGTTC
GCATGGAAACGAGGGTGTTCTGGAGGTACGAGTTGCCGGAGGAGGTACAA
GGAAGGACGATCAGGGCGAGGCAAAAAGGAGAAGGGGACTTTACATGCAT
AAATGTACTAGAAGTAATGGCGATGGTGATGACGGCGTATGTGATGGTTG
TTTCGAGGGGGGATAAGCCGGAGCGGGAAGGAGAGGCGGTGATGATGAGG
GCGGACAATGAGAGCGCTGTGTCGTGGATGAAGAAGTGTGT

Coding sequence (CDS) from alignment at Scaffold_129:530596..533436-

>EsuBft2084_4a-0001 ID=EsuBft2084_4a-0001|Name=EsuBft2084_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=738bp|location=Sequence derived from alignment at Scaffold_129:530596..533436- (Ectocarpus subulatus male Bft15b)
ATGGACGTGGACATGGAGTTGGACCGCCGCGTGGAGGCCCTTTTCGAGCT
TATAGGGTACCTGGCGTCTTGTATCTTGGACCCTGCTGACCGCGAAGCCC
GGTTTAGGACTTCTAGGATAACGGCGCACCTGGCCGGCATGGCGACCGCA
GTTCGGCTCTACTTCGCGGCGAACGGGCTCTTGACACGGGGGTGGCGGTT
CCGCGAGGCATTCATGCGGGCATTCAACACGGACCTCGAGGAGTGGACCG
CAGCAGTAACTGCGAGGGCGCTGGCGGAGCAGGCGAAAGCCGGGGGTGGG
GGGATACCGGNGTTCCGCGAGGCATTCATGCGGGCATACAACACGGACCT
CGAGGAGTGGACCGCAGCAGTAACTGCGAGGGCGCTGGCGGAACAGGAGA
AAGCCGGGGGTGGGGGGATACCGGGCGGGATGCAGTTGGGGGAGATCCCG
ATGCCGCAGTTCACCCACACATACCTCCTCATGCCGCTGGCACCGCTGGT
GCCGGCATTCGGCGTGGGAGGGGACGGTCGGAGCGGAGGCGGGGGCAGCG
GATGGNAATATCGGAAGGGCTACGCGTGCCGGTACCGGCACACCGGCGGC
GGGGCCGACGGGGGCAGGGGAGGTTACAGGATGGGGCGAGGGCGCGAGCG
GGGAGTGGGTCATGGGCGCGGATACGGGGCCGGTGCCGGCGTCGGTGTCG
TCTGGAGCAGCAGGTACAGCATCGGGTGGCGCGGCTGA