EsuBft3762_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft3762_2a-0001
Unique Name	EsuBft3762_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_392	contig	Scaffold_392:345500..347944 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	159749.K0T4Q0
ProteomeId	EsuBft3762_2
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	244
Evalue	5.66e-07
EggNOG OGs	2D06V@1\|root,2SD1E@2759\|Eukaryota
Date last modified	2016-06-15
Date creation	2016-06-15

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft3762_2a	EsuBft3762_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_392 345500..347944 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3762_2a-0001-exon	EsuBft3762_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 345500..347944 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3762_2a-0001-cds	EsuBft3762_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_392 345500..345949 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3762_2a-0001-exon	agat-three_prime_utr-14385	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_392 345950..347944 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft3762_2a-0001	EsuBft3762_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_392 345500..345949 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_392:345500..347944+
coding sequence from alignment at Scaffold_392:345500..347944+

spliced messenger RNA

>EsuBft3762_2a-0001 ID=EsuBft3762_2a-0001|Name=EsuBft3762_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2445bp|location=Sequence derived from alignment at Scaffold_392:345500..347944+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTGGAAAAGGTTCTGCAAGCCTTGCCTGACTTTAAGAATGAGAG
GACAGCCCTGCAGCACCTGGTAGAGAGTAGGGGACACATTCTTTTGTTGT
CTCCGAAGTGTCACCCGGAGGTAGCGGGGGTAGGGATCCAGTACTCGTGG
GGGTTTTCCAAGCAGAAGTTTCGGCGGAAGATCAATGATGAGGTCCCGAA
GCACTTGCACGACAACATCGAAAAGTCGCTGTGCATAGACAAGTACTTGA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGGAGAAGCGGGTGTTGTGTGAGCTGTGTGTTGTCGTT
GTAGATTGTAGTCGGTGGCATGTACTTGTACATTGGATTTTTTTTCTGCG
AGATAAACGGGTGTGGTGGGGGTGTGTGTTAAATGAGTCGGTTTCAAGCT
GTAGTTTGCATCATTTTTTTCTGTAAGATTAACCGGTGCGAGAAGTTGTG
TGTGTGTGTTGATGAGTCTGTCAGTTTGAATGTTGTTTTTAGATAAGCGG
GTGTTTTTTAACCGCTGTCAATCAACGAACGAAGTGTTTTTTTTTATGTA
CAAAGAAACGTCAACTTTTGTGCGATTTGTGCAAAACATTTGTCATGCGT
TTTTGGAGCGCTTACCTTCAGATTACAACCTCTTGCATGTATGTGTGTCA
CGTCATTACGATCGATAAGCACCCACACCTACCTGTCCAACCAAAGGGGT
ACAGTCAGCATCTGTGCGCCTCTTGCCATCAGGCCGCTTTCGCGCCCCTT
TTCTCGGGCTGTAAGGCCTTCATTTTCCTACACAATTTCCGCCCCTGCAC
CCAGGTATCGAGGTCATGACGCAATTTGCTATTTCCGAGCCGGTTTTTAC
GAATTGGAACCTGAAATTTTGATATGTGATTAGGATTGGTCTTACAAATG
CCCCCGAGTGAGATGCCGTTTTTATTTTTTTACCCACAAAAACCCCTATG
CTAGGATTCTCAGTTATTGAATATAGGGATACCTCGCCAAAAAANNNNNN
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NNNNNNNNCTCCTCCTCCTCCTCCTCCACCCGCAGATCGCCGAACAAACC
ACCCGGTTCTTGGTCATCATGCTCACCATCGGAGTCGAACGTGTGCATTA
TGTTCTGCAAACTCGATGCTGCGGCAGCAGCCCCGGCCATTATGGACTCC
TCATCCATGTTGGGCGTGGCCTTCTCGTCGGCGCGGCCTTCTCGTGAGTG
TGTGTGTAGATGTGTTCGTGTGTTCTTGTGTTGTTGGGGGTGTGTGTGTG
CGTTGGCGGCGAATGTGCCGAAAACGCGGCGCTACTTGCCTTTTCCGCCG
CCCAAACATTTTCGCGACCTGCCCCATTTCAAAATGTTTGTCAAACATTT
TGTCAACCGAGCGACTTTTGCCCCATTTCGAAATCTTTAGAATATTTTGC
CGAAGATTTTCTCCCATAAAAAGTGAAACAAAATCTTTATCCGCAAATGT
TTGAAAATTTAGACATTTTTTCAAAGATTTGGTGACCATAAACAT

protein sequence of EsuBft3762_2a-0001

>EsuBft3762_2 ID=EsuBft3762_2|Name=EsuBft3762_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=150bp
MHVEKVLQALPDFKNERTALQHLVESRGHILLLSPKCHPEVAGVGIQYSW
GFSKQKFRRKINDEVPKHLHDNIEKSLCIDKYLTXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX

mRNA from alignment at Scaffold_392:345500..347944+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft3762_2a-0001 ID=EsuBft3762_2a-0001|Name=EsuBft3762_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2445bp|location=Sequence derived from alignment at Scaffold_392:345500..347944+ (Ectocarpus subulatus male Bft15b)
ATGCACGTGGAAAAGGTTCTGCAAGCCTTGCCTGACTTTAAGAATGAGAG
GACAGCCCTGCAGCACCTGGTAGAGAGTAGGGGACACATTCTTTTGTTGT
CTCCGAAGTGTCACCCGGAGGTAGCGGGGGTAGGGATCCAGTACTCGTGG
GGGTTTTCCAAGCAGAAGTTTCGGCGGAAGATCAATGATGAGGTCCCGAA
GCACTTGCACGACAACATCGAAAAGTCGCTGTGCATAGACAAGTACTTGA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNAGGAGAAGCGGGTGTTGTGTGAGCTGTGTGTTGTCGTT
GTAGATTGTAGTCGGTGGCATGTACTTGTACATTGGATTTTTTTTCTGCG
AGATAAACGGGTGTGGTGGGGGTGTGTGTTAAATGAGTCGGTTTCAAGCT
GTAGTTTGCATCATTTTTTTCTGTAAGATTAACCGGTGCGAGAAGTTGTG
TGTGTGTGTTGATGAGTCTGTCAGTTTGAATGTTGTTTTTAGATAAGCGG
GTGTTTTTTAACCGCTGTCAATCAACGAACGAAGTGTTTTTTTTTATGTA
CAAAGAAACGTCAACTTTTGTGCGATTTGTGCAAAACATTTGTCATGCGT
TTTTGGAGCGCTTACCTTCAGATTACAACCTCTTGCATGTATGTGTGTCA
CGTCATTACGATCGATAAGCACCCACACCTACCTGTCCAACCAAAGGGGT
ACAGTCAGCATCTGTGCGCCTCTTGCCATCAGGCCGCTTTCGCGCCCCTT
TTCTCGGGCTGTAAGGCCTTCATTTTCCTACACAATTTCCGCCCCTGCAC
CCAGGTATCGAGGTCATGACGCAATTTGCTATTTCCGAGCCGGTTTTTAC
GAATTGGAACCTGAAATTTTGATATGTGATTAGGATTGGTCTTACAAATG
CCCCCGAGTGAGATGCCGTTTTTATTTTTTTACCCACAAAAACCCCTATG
CTAGGATTCTCAGTTATTGAATATAGGGATACCTCGCCAAAAAANNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCTCCTCCTCCTCCTCCTCCACCCGCAGATCGCCGAACAAACC
ACCCGGTTCTTGGTCATCATGCTCACCATCGGAGTCGAACGTGTGCATTA
TGTTCTGCAAACTCGATGCTGCGGCAGCAGCCCCGGCCATTATGGACTCC
TCATCCATGTTGGGCGTGGCCTTCTCGTCGGCGCGGCCTTCTCGTGAGTG
TGTGTGTAGATGTGTTCGTGTGTTCTTGTGTTGTTGGGGGTGTGTGTGTG
CGTTGGCGGCGAATGTGCCGAAAACGCGGCGCTACTTGCCTTTTCCGCCG
CCCAAACATTTTCGCGACCTGCCCCATTTCAAAATGTTTGTCAAACATTT
TGTCAACCGAGCGACTTTTGCCCCATTTCGAAATCTTTAGAATATTTTGC
CGAAGATTTTCTCCCATAAAAAGTGAAACAAAATCTTTATCCGCAAATGT
TTGAAAATTTAGACATTTTTTCAAAGATTTGGTGACCATAAACAT

Coding sequence (CDS) from alignment at Scaffold_392:345500..347944+

>EsuBft3762_2a-0001 ID=EsuBft3762_2a-0001|Name=EsuBft3762_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=450bp|location=Sequence derived from alignment at Scaffold_392:345500..347944+ (Ectocarpus subulatus male Bft15b)
ATGCACGTGGAAAAGGTTCTGCAAGCCTTGCCTGACTTTAAGAATGAGAG
GACAGCCCTGCAGCACCTGGTAGAGAGTAGGGGACACATTCTTTTGTTGT
CTCCGAAGTGTCACCCGGAGGTAGCGGGGGTAGGGATCCAGTACTCGTGG
GGGTTTTCCAAGCAGAAGTTTCGGCGGAAGATCAATGATGAGGTCCCGAA
GCACTTGCACGACAACATCGAAAAGTCGCTGTGCATAGACAAGTACTTGA
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN