EsuBft151_21a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft151_21a-0001
Unique NameEsuBft151_21a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:308602..310147 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog44056.XP_009032194.1
ProteomeIdEsuBft151_21
Protein domainsIPR003327
Protein domainsCoil
Protein domainsIPR019347
Protein domainsPTHR13183
Ownerapollo_admin@sb-roscoff.fr
Note33 kda inner dynein arm light axonemal os:strongylocentrotus purpuratus pe:1 sv:1 [Automatic annotation]
Nb exon3
Max annot lvl2759|Eukaryota
Length306
Hectar predicted targeting categoryother localisation
Evalue3.19e-31
EggNOG OGsKOG4001@1|root,KOG4001@2759|Eukaryota
Date last modified2016-06-14
Date creation2016-06-14
Preferred nameIDA4
KEGG koko:K10410
KEGG Pathwayko05016,map05016
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0032838,GO:0032991,GO:0034622,GO:0035082,GO:0036156,GO:0036159,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045504,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
Descriptiondynein heavy chain binding
COG categoryS
BRITEko00000,ko00001,ko04812
Cross References
External references for this mRNA
DatabaseAccession
GO0007338
GO0045504
GO0005515
GO0003700
GO0003777
GO0003824
GO0005858
GO0030175
GO0003341
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft151_21aEsuBft151_21aEctocarpus subulatus male Bft15bgeneScaffold_392 308602..310147 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_21a-0001-exonEsuBft151_21a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 308602..308710 -
EsuBft151_21a-0001-exonagat-exon-79104Ectocarpus subulatus male Bft15bexonScaffold_392 309420..309514 -
EsuBft151_21a-0001-exonagat-exon-79105Ectocarpus subulatus male Bft15bexonScaffold_392 310046..310147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_21a-0001-cdsEsuBft151_21a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 308602..308710 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft151_21a-0001EsuBft151_21Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 308602..310147 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft151_21a-0001 ID=EsuBft151_21a-0001|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=306bp|location=Sequence derived from alignment at Scaffold_392:308602..310147- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCATAGCCGCGTACCAGACGATGTACGAGTCTAGCATTGCCTTCGG
CATCCGGAAGGCGCTCATCGCTGAGCAGCGCAAAGCAGAAATGGAGGCAA
AGATCCGGCAGTTGCAGGAAGACAAAGCCGACCTAGAGCGCCAGGTGACA
GAGCTCAGCGCCAAGTGCGAGCAGGTCAAACCACGGGAGGCGGAAAGACG
CGCGGCCGACGAGAAGAAGCACAGCGCGGAGGTGGATCAGCTCAAGCGCA
CGAACGAGCAGCTCAAGACAACCCTGGAGCAAATGCTCTCGGCTCCCAAG
AAGTAA
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protein sequence of EsuBft151_21a-0001

>EsuBft151_21 ID=EsuBft151_21|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MTIAAYQTMYESSIAFGIRKALIAEQRKAEMEAKIRQLQEDKADLERQVT
ELSAKCEQVKPREAERRAADEKKHSAEVDQLKRTNEQLKTTLEQMLSAPK
K
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mRNA from alignment at Scaffold_392:308602..310147-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft151_21a-0001 ID=EsuBft151_21a-0001|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1546bp|location=Sequence derived from alignment at Scaffold_392:308602..310147- (Ectocarpus subulatus male Bft15b)
ATGACCATAGCCGCGTACCAGACGATGTACGAGTCTAGCATTGCCTTCGG
CATCCGGAAGGCGCTCATCGCTGAGCAGCGCAAAGCAGAAATGGAGGCAA
AGGTACTGTATGAACGAGTTGCTGCATCCATAGCCGAAGGCATTTTTGTT
CGTTTCTTCCCTTTCTGTTTGGCTCCTTTCGATCGGTCGTGCTAACCACT
CGCTGTAGTACGTAAGGTCTGACGATCGGAACCACGGATGGAATACAACG
AGTTCCTTTGAGAGTATTGCGCAAGTTATTAAGATGTTTGTTGAGAGGTT
TCTATGTGACTGAGTGAACTTGTATGCATCGTGTTCTTGTAGGTTCCCAA
ACCTTCGAGCAAGATCATGTGTTATGGAACACATACGCCAGGAATATGCA
GGACGCTTGTTGAAAATAATGTGAACCGAAGAGAGGGGGCACAAGATTCG
GCCGCTGTGAGGAAATGCATCAGACGCATGACCAATTGTTTCCATTCCGG
ACCGATTGTTTCCATTCCGACCGTGGTGCGTGCTGCAGTTGGTTTCAAAG
CCGTTTGATGGTATCTGTGTGTCCCTTGAAAGAGTTAACCTGACGGGCGT
TCGATCTACTTGTTTACTTCGCTGTGGTTACAGATCCGGCAGTTGCAGGA
AGACAAAGCCGACCTAGAGCGCCAGGTGACAGAGCTCAGCGCCAAGTGCG
AGCAGGTCAAACCACGGGAGGCGGAAAGGTACGAAGAAGACATACGAAGT
CGCTTTAGTAGTAGTGCGATAGAGGTACAGTAGCTGGCGCCGTCAGAAAC
GAAAAAATGTTGACGTTGTGGCTTCGAGTATCACTCACTCTGTATTCGGA
TATTGGAGCACTCTCTGGTTGGTTCTTGAACACGCGTTTCCTTCATAAAA
CACGATTCTGGCACCCCGGCCAACCGACCGAGTAAATCGGGGATCGATGT
TGTCTTTTATCCCGTCACAGTACGACCTTGAGGGAGAGTGTTTTCGCATC
TTCAACAACCTCCCGACGAGTGAAGTATGGTGGATGAACTCCACCCACAA
AAAATGCCGTTTGATCTCTCCTTCATCTACCACAGCGAACGTATGGTGTG
ATGGGTCCGTCCGAACGTCGGTCAGCGCAAGCTATATGTTCCGAGTCGAT
TCGGGTCGTCTCCCGTGTTGTGCAGAAACGCCAAGGAACTCTCACGAACG
AGCTTACTTCTGAGTTGGAACCATTACGCAGAGAAGATCTAGGCGATGCT
CTCACGGAACCCTGCGGCCAGGTCAACGCGCATAATATACGCGGGGACTG
CATCTCTCCCGGTCGCACTCCAGCGCCCCCCCCCCTCAATCACTCTGCTT
TCGGACTGTCAACCTTGCACCCCCCCTCGCTCCGCGATGATACTGCCGTT
CTGTGTTCGTGCCCGACACGGTGAACGGCACGCCCAGACGCGCGGCCGAC
GAGAAGAAGCACAGCGCGGAGGTGGATCAGCTCAAGCGCACGAACGAGCA
GCTCAAGACAACCCTGGAGCAAATGCTCTCGGCTCCCAAGAAGTAA
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Coding sequence (CDS) from alignment at Scaffold_392:308602..310147-

>EsuBft151_21a-0001 ID=EsuBft151_21a-0001|Name=EsuBft151_21a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_392:308602..310147- (Ectocarpus subulatus male Bft15b)
ATGACCATAGCCGCGTACCAGACGATGTACGAGTCTAGCATTGCCTTCGG
CATCCGGAAGGCGCTCATCGCTGAGCAGCGCAAAGCAGAAATGGAGGCAA
AGATCCGGCAGTTGCAGGAAGACAAAGCCGACCTAGAGCGCCAGGTGACA
GAGCTCAGCGCCAAGTGCGAGCAGGTCAAACCACGGGAGGCGGAAAGACG
CGCGGCCGACGAGAAGAAGCACAGCGCGGAGGTGGATCAGCTCAAGCGCA
CGAACGAGCAGCTCAAGACAACCCTGGAGCAAATGCTCTCGGCTCCCAAG
AAGTAA
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