EsuBft151_17a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft151_17a-0001
Unique Name	EsuBft151_17a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_392	contig	Scaffold_392:272515..275232 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft151_17
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	271
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft151_17a	EsuBft151_17a	Ectocarpus subulatus male Bft15b	gene	Scaffold_392 272515..275232 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_17a-0001-exon	EsuBft151_17a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 272515..275232 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_17a-0001-cds	EsuBft151_17a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_392 272515..274818 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_17a-0001-exon	agat-three_prime_utr-4558	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_392 274819..275232 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_17a-0001	EsuBft151_17	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_392 272515..274818 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_392:272515..275232+
coding sequence from alignment at Scaffold_392:272515..275232+

spliced messenger RNA

>EsuBft151_17a-0001 ID=EsuBft151_17a-0001|Name=EsuBft151_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2718bp|location=Sequence derived from alignment at Scaffold_392:272515..275232+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCTACGAAGCCCCCGGCATTCGCCAATTGCGCCGCATGACGGACGA
CCAGATCTCTCGCACGCCACCATCAACAACACCGCCGTTCGTGATGGGGC
GTAAGCGACCGCGGGTGGATGCAGAGGTCACGGAGGACGCCACGTCCTCG
ATAGAATCACCACCTCTGCCTACCGCAATGCCGCCGCCAGAACCACCTCG
ACAACAGCAGCAGCAGTACTTCCGCTACGAATTAGGTCCAACGCCCGACG
AGGGGTGGAACGGCCGCGTCGAAGTCGACAACAACCGAGACACCTCAAGG
TACCTCAGACGCGCATATTTCTCGAGGAATCGGCACCAGCGAGAGGTGGA
TAAGGTCGACATTCCGGCACCCGTGGAGTGGCTTTGCCACGACGCCGCCA
GTTCCACGAGGCTCCGCGCGCAGGCCCAGAAGGACCTGCAGCTTTTCGTC
CCTCGCCCGCCCTACCACCTGCCGCACAGCGAGAGACAGGAGCGCTGGCC
AGGGGACATCGGGATCCGCGCCGCCATCCACAGCACCTTGAACTATTCAA
CCGGAAATTGTACGGCTGGACACATGAGGCCTGAGCGAGTCATCCGCGGC
GGCGACGTGCTGCCGTGGGGCACTTGGCCCGTTAGGCTTCGGCACCACGA
GGGTCAGAGCTTCTACCGAGACCCTGTCGGGTACGGCAGTAGAGGTGATA
GCAGTCGTGGCGATGTCGGCTGTTCCAGTTCTGGTTCGCGCTACTGGGTC
GGTGTGGGTGGTGTTGGTCGCAACGGCGGCGTCGGTGGAGTCGGCGCCGT
TAGCGAAGGCTCGATCCACGACGAGCTTCTCACGCGAGAGTTTCCCTTTT
ATACCCACGGGCACAAACGTTACGAGGAGGCTCCCGTGAAACGGCTGGTA
CCTGACAGGCGCGGCCGATGGGTCGAAGCATGGCCAAAAAGACCGCCGCT
GACGCGTGCTGCTGCTACAGCGGCAGCAGAAACCTCTATCTCTGGCTCCG
ATCCTGCTTCCAGCCCCGTTGGCCCGCCGCCTCCGGAGCCGCCGCCGCCG
CCCCCCGCCGTGCCCTCGTCTATGCCGTCTAGCACGGCTGAGGGAGGGGT
CGTCAAGGCCCTGCTTCCTGCCCGGTACGGGGGCTGGGTCGAGTTCCAGA
TGGACAAGAAGGACAGCGCTACTGTCGCCACAAAGAAACGACGCGCAGCC
GTTGCGATGGCTGCCAGGTTCGGACCGGACGGCGATGGTGATGAAAAGAA
TGCGGGCGTCGTCCCTGACGCTGCCCTGCCGTCGTCGTACCAAGAAGAGG
AGGAGTACGTTCGTCGGATGGTGGCGTCTACGACAACAAGGAAGGCGGGG
CGACAGCAAGGAGAGAAAAGCACACAGCATCAACACGGCGTGCTCGCGAG
TCTAACGGAAGAAGGCGACCAAGGCGGTGGTAGGGTAGCGACGGGCGGTG
CCGAAGGGAGGCGGAGAAAGCGTAGCTGGGACACCGCCCGCAGCGGTGTC
AACGCGGAGAGAGGTGACGATGATCACGGCGACAATAGTGGCTGTCACCG
GCAAGGCTGGATTGTGTCCGAACCGGCGAAGGAGACAGTCAGACGAGTGT
GGAACAGGGCGAGGAGACGCGCCCGAGACAGCTTCGAACCGAGGAACCGT
GCGCCTGAAGCAGCGGTCGACAATGGTGCAGAGGACGGAGCTGCTTCACC
TGCCGCCGGCACAACCGCCACTTCCGCAGCTGGCTGCGGGACAGCGCGCG
AGGAGCTCGACCCTGGCCTGTTGTCTTGCCTTGGGAGGGAGTGCGAGGGG
ATAATCGACGCCGCGCTACACGTTGTTCTGGGCGACCGGCTCCGGCGTCT
CAGAGCGCGGTCTTCGTCGTCGTTGGCAGAAGACAAGCAGAAAATCTCGC
CGCCGCCGCCTCCTCTAGAGACGGCAGACTGGCAGGACGTCTTGAGGGCG
ATGGAGAGCTGTTCGGAAGGCGCTCGAAGCGCTCGGCCGCCCGTGGCCAC
AGCAGCCGCGTTTCGCTCGAAAGCTGCGGAAGCTCGCCGGGCAGGCTGCA
TAGGAGGAGGAGGAGGAGGAGGAGGGGCAAAAAATGGAGGAAAGGGGGGA
GGAACAACAGATGGCAGGGAAGGAGTTCCAGGACGAGAAGCGATATTGAG
GGCAGTGTGGGGAGGGGGAGGAGACTCGAGCGATGGATCAGTGGTGGTCG
TGAACGAGAGGCTCCCTGGTCTGCCGCTGAACAAAGCGGTGCTGACGCGA
TCGTACAACAGGCTGCTGCTGTACCTTCATGAGAAAAAAGCATGGCAAGT
GTAGGCAGAATTCCAGTTGTGTTATTTTTGCGCTGTAGACCTGGTCAGAC
AGGGTGTGACGCGTTTGTACCTCGTTGCCGTAGACTTTCGATCCGTTTGT
CGATGTTGCGTGGTAGTTGGTAGGCGGGTCTCAGGGCTGCCTTGCTTGCT
CGCGTTGTTTTCACTTATGTTCCTGGTTTTGACCACTTTTTCGTACGCGA
ATGTGTGCCGTGGGCAAGCGGCGGCCCGATCGTCATGAAAGATATGAGAC
GACTGCATGCACGGAAGACGTGGCGGTAGCGGTCAGGGTGGTGGTTTTCT
GGGGAATTTGCCTGTACTTCGTACCAAACTGGATGAAAACAGTCGCCATT
TATAAAGTGAACAAGCGCGTGGTCATGGGCGGTACGCACAACCTAGAGGG
AAGGGATTGCTGCACCCT

protein sequence of EsuBft151_17a-0001

>EsuBft151_17 ID=EsuBft151_17|Name=EsuBft151_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=767bp
MIYEAPGIRQLRRMTDDQISRTPPSTTPPFVMGRKRPRVDAEVTEDATSS
IESPPLPTAMPPPEPPRQQQQQYFRYELGPTPDEGWNGRVEVDNNRDTSR
YLRRAYFSRNRHQREVDKVDIPAPVEWLCHDAASSTRLRAQAQKDLQLFV
PRPPYHLPHSERQERWPGDIGIRAAIHSTLNYSTGNCTAGHMRPERVIRG
GDVLPWGTWPVRLRHHEGQSFYRDPVGYGSRGDSSRGDVGCSSSGSRYWV
GVGGVGRNGGVGGVGAVSEGSIHDELLTREFPFYTHGHKRYEEAPVKRLV
PDRRGRWVEAWPKRPPLTRAAATAAAETSISGSDPASSPVGPPPPEPPPP
PPAVPSSMPSSTAEGGVVKALLPARYGGWVEFQMDKKDSATVATKKRRAA
VAMAARFGPDGDGDEKNAGVVPDAALPSSYQEEEEYVRRMVASTTTRKAG
RQQGEKSTQHQHGVLASLTEEGDQGGGRVATGGAEGRRRKRSWDTARSGV
NAERGDDDHGDNSGCHRQGWIVSEPAKETVRRVWNRARRRARDSFEPRNR
APEAAVDNGAEDGAASPAAGTTATSAAGCGTAREELDPGLLSCLGRECEG
IIDAALHVVLGDRLRRLRARSSSSLAEDKQKISPPPPPLETADWQDVLRA
MESCSEGARSARPPVATAAAFRSKAAEARRAGCIGGGGGGGGAKNGGKGG
GTTDGREGVPGREAILRAVWGGGGDSSDGSVVVVNERLPGLPLNKAVLTR
SYNRLLLYLHEKKAWQV

mRNA from alignment at Scaffold_392:272515..275232+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft151_17a-0001 ID=EsuBft151_17a-0001|Name=EsuBft151_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2718bp|location=Sequence derived from alignment at Scaffold_392:272515..275232+ (Ectocarpus subulatus male Bft15b)
ATGATCTACGAAGCCCCCGGCATTCGCCAATTGCGCCGCATGACGGACGA
CCAGATCTCTCGCACGCCACCATCAACAACACCGCCGTTCGTGATGGGGC
GTAAGCGACCGCGGGTGGATGCAGAGGTCACGGAGGACGCCACGTCCTCG
ATAGAATCACCACCTCTGCCTACCGCAATGCCGCCGCCAGAACCACCTCG
ACAACAGCAGCAGCAGTACTTCCGCTACGAATTAGGTCCAACGCCCGACG
AGGGGTGGAACGGCCGCGTCGAAGTCGACAACAACCGAGACACCTCAAGG
TACCTCAGACGCGCATATTTCTCGAGGAATCGGCACCAGCGAGAGGTGGA
TAAGGTCGACATTCCGGCACCCGTGGAGTGGCTTTGCCACGACGCCGCCA
GTTCCACGAGGCTCCGCGCGCAGGCCCAGAAGGACCTGCAGCTTTTCGTC
CCTCGCCCGCCCTACCACCTGCCGCACAGCGAGAGACAGGAGCGCTGGCC
AGGGGACATCGGGATCCGCGCCGCCATCCACAGCACCTTGAACTATTCAA
CCGGAAATTGTACGGCTGGACACATGAGGCCTGAGCGAGTCATCCGCGGC
GGCGACGTGCTGCCGTGGGGCACTTGGCCCGTTAGGCTTCGGCACCACGA
GGGTCAGAGCTTCTACCGAGACCCTGTCGGGTACGGCAGTAGAGGTGATA
GCAGTCGTGGCGATGTCGGCTGTTCCAGTTCTGGTTCGCGCTACTGGGTC
GGTGTGGGTGGTGTTGGTCGCAACGGCGGCGTCGGTGGAGTCGGCGCCGT
TAGCGAAGGCTCGATCCACGACGAGCTTCTCACGCGAGAGTTTCCCTTTT
ATACCCACGGGCACAAACGTTACGAGGAGGCTCCCGTGAAACGGCTGGTA
CCTGACAGGCGCGGCCGATGGGTCGAAGCATGGCCAAAAAGACCGCCGCT
GACGCGTGCTGCTGCTACAGCGGCAGCAGAAACCTCTATCTCTGGCTCCG
ATCCTGCTTCCAGCCCCGTTGGCCCGCCGCCTCCGGAGCCGCCGCCGCCG
CCCCCCGCCGTGCCCTCGTCTATGCCGTCTAGCACGGCTGAGGGAGGGGT
CGTCAAGGCCCTGCTTCCTGCCCGGTACGGGGGCTGGGTCGAGTTCCAGA
TGGACAAGAAGGACAGCGCTACTGTCGCCACAAAGAAACGACGCGCAGCC
GTTGCGATGGCTGCCAGGTTCGGACCGGACGGCGATGGTGATGAAAAGAA
TGCGGGCGTCGTCCCTGACGCTGCCCTGCCGTCGTCGTACCAAGAAGAGG
AGGAGTACGTTCGTCGGATGGTGGCGTCTACGACAACAAGGAAGGCGGGG
CGACAGCAAGGAGAGAAAAGCACACAGCATCAACACGGCGTGCTCGCGAG
TCTAACGGAAGAAGGCGACCAAGGCGGTGGTAGGGTAGCGACGGGCGGTG
CCGAAGGGAGGCGGAGAAAGCGTAGCTGGGACACCGCCCGCAGCGGTGTC
AACGCGGAGAGAGGTGACGATGATCACGGCGACAATAGTGGCTGTCACCG
GCAAGGCTGGATTGTGTCCGAACCGGCGAAGGAGACAGTCAGACGAGTGT
GGAACAGGGCGAGGAGACGCGCCCGAGACAGCTTCGAACCGAGGAACCGT
GCGCCTGAAGCAGCGGTCGACAATGGTGCAGAGGACGGAGCTGCTTCACC
TGCCGCCGGCACAACCGCCACTTCCGCAGCTGGCTGCGGGACAGCGCGCG
AGGAGCTCGACCCTGGCCTGTTGTCTTGCCTTGGGAGGGAGTGCGAGGGG
ATAATCGACGCCGCGCTACACGTTGTTCTGGGCGACCGGCTCCGGCGTCT
CAGAGCGCGGTCTTCGTCGTCGTTGGCAGAAGACAAGCAGAAAATCTCGC
CGCCGCCGCCTCCTCTAGAGACGGCAGACTGGCAGGACGTCTTGAGGGCG
ATGGAGAGCTGTTCGGAAGGCGCTCGAAGCGCTCGGCCGCCCGTGGCCAC
AGCAGCCGCGTTTCGCTCGAAAGCTGCGGAAGCTCGCCGGGCAGGCTGCA
TAGGAGGAGGAGGAGGAGGAGGAGGGGCAAAAAATGGAGGAAAGGGGGGA
GGAACAACAGATGGCAGGGAAGGAGTTCCAGGACGAGAAGCGATATTGAG
GGCAGTGTGGGGAGGGGGAGGAGACTCGAGCGATGGATCAGTGGTGGTCG
TGAACGAGAGGCTCCCTGGTCTGCCGCTGAACAAAGCGGTGCTGACGCGA
TCGTACAACAGGCTGCTGCTGTACCTTCATGAGAAAAAAGCATGGCAAGT
GTAGGCAGAATTCCAGTTGTGTTATTTTTGCGCTGTAGACCTGGTCAGAC
AGGGTGTGACGCGTTTGTACCTCGTTGCCGTAGACTTTCGATCCGTTTGT
CGATGTTGCGTGGTAGTTGGTAGGCGGGTCTCAGGGCTGCCTTGCTTGCT
CGCGTTGTTTTCACTTATGTTCCTGGTTTTGACCACTTTTTCGTACGCGA
ATGTGTGCCGTGGGCAAGCGGCGGCCCGATCGTCATGAAAGATATGAGAC
GACTGCATGCACGGAAGACGTGGCGGTAGCGGTCAGGGTGGTGGTTTTCT
GGGGAATTTGCCTGTACTTCGTACCAAACTGGATGAAAACAGTCGCCATT
TATAAAGTGAACAAGCGCGTGGTCATGGGCGGTACGCACAACCTAGAGGG
AAGGGATTGCTGCACCCT

Coding sequence (CDS) from alignment at Scaffold_392:272515..275232+

>EsuBft151_17a-0001 ID=EsuBft151_17a-0001|Name=EsuBft151_17a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2304bp|location=Sequence derived from alignment at Scaffold_392:272515..275232+ (Ectocarpus subulatus male Bft15b)
ATGATCTACGAAGCCCCCGGCATTCGCCAATTGCGCCGCATGACGGACGA
CCAGATCTCTCGCACGCCACCATCAACAACACCGCCGTTCGTGATGGGGC
GTAAGCGACCGCGGGTGGATGCAGAGGTCACGGAGGACGCCACGTCCTCG
ATAGAATCACCACCTCTGCCTACCGCAATGCCGCCGCCAGAACCACCTCG
ACAACAGCAGCAGCAGTACTTCCGCTACGAATTAGGTCCAACGCCCGACG
AGGGGTGGAACGGCCGCGTCGAAGTCGACAACAACCGAGACACCTCAAGG
TACCTCAGACGCGCATATTTCTCGAGGAATCGGCACCAGCGAGAGGTGGA
TAAGGTCGACATTCCGGCACCCGTGGAGTGGCTTTGCCACGACGCCGCCA
GTTCCACGAGGCTCCGCGCGCAGGCCCAGAAGGACCTGCAGCTTTTCGTC
CCTCGCCCGCCCTACCACCTGCCGCACAGCGAGAGACAGGAGCGCTGGCC
AGGGGACATCGGGATCCGCGCCGCCATCCACAGCACCTTGAACTATTCAA
CCGGAAATTGTACGGCTGGACACATGAGGCCTGAGCGAGTCATCCGCGGC
GGCGACGTGCTGCCGTGGGGCACTTGGCCCGTTAGGCTTCGGCACCACGA
GGGTCAGAGCTTCTACCGAGACCCTGTCGGGTACGGCAGTAGAGGTGATA
GCAGTCGTGGCGATGTCGGCTGTTCCAGTTCTGGTTCGCGCTACTGGGTC
GGTGTGGGTGGTGTTGGTCGCAACGGCGGCGTCGGTGGAGTCGGCGCCGT
TAGCGAAGGCTCGATCCACGACGAGCTTCTCACGCGAGAGTTTCCCTTTT
ATACCCACGGGCACAAACGTTACGAGGAGGCTCCCGTGAAACGGCTGGTA
CCTGACAGGCGCGGCCGATGGGTCGAAGCATGGCCAAAAAGACCGCCGCT
GACGCGTGCTGCTGCTACAGCGGCAGCAGAAACCTCTATCTCTGGCTCCG
ATCCTGCTTCCAGCCCCGTTGGCCCGCCGCCTCCGGAGCCGCCGCCGCCG
CCCCCCGCCGTGCCCTCGTCTATGCCGTCTAGCACGGCTGAGGGAGGGGT
CGTCAAGGCCCTGCTTCCTGCCCGGTACGGGGGCTGGGTCGAGTTCCAGA
TGGACAAGAAGGACAGCGCTACTGTCGCCACAAAGAAACGACGCGCAGCC
GTTGCGATGGCTGCCAGGTTCGGACCGGACGGCGATGGTGATGAAAAGAA
TGCGGGCGTCGTCCCTGACGCTGCCCTGCCGTCGTCGTACCAAGAAGAGG
AGGAGTACGTTCGTCGGATGGTGGCGTCTACGACAACAAGGAAGGCGGGG
CGACAGCAAGGAGAGAAAAGCACACAGCATCAACACGGCGTGCTCGCGAG
TCTAACGGAAGAAGGCGACCAAGGCGGTGGTAGGGTAGCGACGGGCGGTG
CCGAAGGGAGGCGGAGAAAGCGTAGCTGGGACACCGCCCGCAGCGGTGTC
AACGCGGAGAGAGGTGACGATGATCACGGCGACAATAGTGGCTGTCACCG
GCAAGGCTGGATTGTGTCCGAACCGGCGAAGGAGACAGTCAGACGAGTGT
GGAACAGGGCGAGGAGACGCGCCCGAGACAGCTTCGAACCGAGGAACCGT
GCGCCTGAAGCAGCGGTCGACAATGGTGCAGAGGACGGAGCTGCTTCACC
TGCCGCCGGCACAACCGCCACTTCCGCAGCTGGCTGCGGGACAGCGCGCG
AGGAGCTCGACCCTGGCCTGTTGTCTTGCCTTGGGAGGGAGTGCGAGGGG
ATAATCGACGCCGCGCTACACGTTGTTCTGGGCGACCGGCTCCGGCGTCT
CAGAGCGCGGTCTTCGTCGTCGTTGGCAGAAGACAAGCAGAAAATCTCGC
CGCCGCCGCCTCCTCTAGAGACGGCAGACTGGCAGGACGTCTTGAGGGCG
ATGGAGAGCTGTTCGGAAGGCGCTCGAAGCGCTCGGCCGCCCGTGGCCAC
AGCAGCCGCGTTTCGCTCGAAAGCTGCGGAAGCTCGCCGGGCAGGCTGCA
TAGGAGGAGGAGGAGGAGGAGGAGGGGCAAAAAATGGAGGAAAGGGGGGA
GGAACAACAGATGGCAGGGAAGGAGTTCCAGGACGAGAAGCGATATTGAG
GGCAGTGTGGGGAGGGGGAGGAGACTCGAGCGATGGATCAGTGGTGGTCG
TGAACGAGAGGCTCCCTGGTCTGCCGCTGAACAAAGCGGTGCTGACGCGA
TCGTACAACAGGCTGCTGCTGTACCTTCATGAGAAAAAAGCATGGCAAGT
GTAG