EsuBft151_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft151_11a-0001
Unique Name	EsuBft151_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_392	contig	Scaffold_392:226893..230044 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft151_11
Protein domains	Coil
Owner	apollo_admin@sb-roscoff.fr
Nb exon	2
Length	245
Hectar predicted targeting category	other localisation
Ec32 ortholog description	hypothetical protein
Ec32 ortholog	Ec-12_004650.1
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft151_11a	EsuBft151_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_392 226893..230044 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_11a-0001-exon	agat-exon-79079	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 226893..229136 -
EsuBft151_11a-0001-exon	EsuBft151_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 229832..230044 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_11a-0001-cds	EsuBft151_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_392 226893..229136 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft151_11a-0001	EsuBft151_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_392 226893..230044 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_392:226893..230044-
coding sequence from alignment at Scaffold_392:226893..230044-

spliced messenger RNA

>EsuBft151_11a-0001 ID=EsuBft151_11a-0001|Name=EsuBft151_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2457bp|location=Sequence derived from alignment at Scaffold_392:226893..230044- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGCTTATCAAGACCCGTGGGCACTAAATCTCGTGGTAGACGAACT
GGGCCATCCCGGGCAAGACATGACGAGGCAGACGCCTGGAGATTCCGGCC
TCCAGGACCCACACATGGGACCAACAGGCGCTACTGCTCCTTTGGTGGCT
GCCAGTGTTGGCCTCGGGCTCTCGTTTAATGAATTCACGGACAACGGAGA
CCCGGAAATATCGGGATGGGCCGACAAACTGTACGAGCACCAACCGCTCC
CAGAATCTAGTCTCCCCACGTCATTGATTTACCCATCGACCTTGGGAGAA
CCACCTACCATGAGAACGGCAGGAACCACAATCGTGGAAGATCTGATGAT
GGCGTCCGCTGCTGCTACTACAACCGCCGCTGACGATTCGTCAAAGAAAG
GAAGAGTCAACACGAGGCCGTCGGCGGCCCTCGCTACTTCCGCGTCGTCC
GTTGGGAACGTGACTAACAGGCTTTTGGCGGATGCTCGTTCTGCTGCTGA
TGGTGATGCCGTTGGGCCTGCTGTCACTGCCGAGCAGCCAGGCTTGCTCG
CGGCGTGCCGCACCACCAGGCAGGGGTCTGCTTCCTCCACTATCAAGGCA
TCGACGAACAAGCCGACCACGCCCGACTGCGCGGAGAGGAAGGAACCGGT
GCCCAAGCGGCGAAAATTGCACGCTTCTGCTGAACCTGTAGCGGCGGATG
TGGCGGCGGCGGCGACGACGGTGGCGAAGGCCGCGGCCACGGCAGGTTCC
TTTTCTTCTTTCAAGGTCGAGGCGGCGACTTCGATGATCGCAGCGAGAAC
GATAACTCCAGATGGTCCTTTTTCGGCAACATCACTGTCATCGGCGGCGG
CTGGAACAAGTGTGGAGAGAGGGCGGGGGCTACTTTCGAACACTTCGGTG
TCGGCGGGCGCGGGAGGGACGGGCGGCAGGGGGTGGCGGAAGCAAGGAGG
CGGCGGGGCACGCGGGGCCGTGCCCGCCAAGACCGCCGCGGCTAGCATTC
CGGAGTTTGACATCTACGGCTTCAACGACACGTCCCACCAGGCGCAGTAC
GAGCGGATGACCTTCCTTGAGCTCGCGAAGGCCGACATGGAGCGCGTCAA
CCTGGAGCGCGACTTCCTGGACAAGAACGCCCGCTTCGACAACGCAAAGG
TCGCCCACGCCATGGTCCACGAGCGGTGGGCGAGGGCGAGAGCGGTCTTC
GAGGGGACGTCCAGGGCGGCCAGCGTCTACTTCGTGGCGGAGCAGGAGGC
GAAAAAGAGGCACGAGGCGGCCTGCCGCGACAAGCGGGTCGCGGAGGCGA
GGGTGACCGAGGCCGAGGAGAGATCGGCGCTCACCCGGGCGGTTGTCGAG
GAGGCCGTGAAGACGCTCGACACCAAACGTGCGGCCAAGAGGCAGGCGGA
GGCGGCCCTCCAGCAGGCTTTTGAGGCCAACGAAGTGGCCGAGAAGAGGG
CAAAGGCGCCGGCGTCCGGAACGAGCGGCGCCAAAGGCGGCGACAACGGC
TGCGGCGGCGGTGGATTTTCTGGCGAGGGATCTTTGTCGAACAATCGGAA
ACGCGACGTCGACGGAACCCTGCCGCCATCTACTGCGGTGACAAGAGCGA
TCAACAAACGTGGCGACGTCCAGCAACATGTTACGGCCAAGGGTCTGGGC
AGTGTCGGTGATGGCGACACGGAGAAAGAGGCCACTGCCGAGGAAGGACA
ACCCGCGGCAAAGCTCCCTGCGATGATGGGCGTCAACCCCCTGTCCGACG
AGCAAGAGCGACAGTTTTACGTGAGGGGACTCGAGATCGAGCGCCAGATC
AGGGCCAGAGTGGCGTCATCGGCCGACAACAGCGTCGCAGCCAAGCAGGA
AACACCGGCCACCACCACCACCACCACCGAAGCGGGAGAGCTAGCGTTTT
TCGCGGCTGCCGACACCACCACGTTACAGCCACAAGCCGCGACCACCACG
GCCACCGCCGCCCTCGAGCTCGCGCTTGAGGCGGTCGATTCCGAGCTCGC
CGCCGCCGAGGGGAGCATGAAGACCGCCGCCGTCTCCGCGGGGCGTGCGA
CCGCCGAGCTTGACTCGGTCAGGCTCGCCCCCGACCTGCAGGGGGCCGTC
CGGGCGGTGGCCGAGACCGCCGACGCCCACCGGGACGCTCTGGACAAGGC
CGGGCTGTACGTGTCCTGGGTGAACAACGAGGTGCTCGCGCAGAGGGGCC
TGCGGGCCTGGTCCGACAAGCTCTTGCGCGCCGCCGTGCTCGCCTGGGAC
GCCAGGGAGAAGGCCCGAAAGGCACTCAACAGGGCCGGGGAGAGGATGTC
GAGGGCGGTGTGCCTCCTGCAGGGGTTCCCGCGGGGCAAACAGATGAACG
TGTCCCGCCATGCCCTTTTCAAGGCCGTCGTGGAGAACCAGCACCAGCTT
TGCCAGCTCAACGCTCTGAAGCGGGAGGAGGAGGAAGAAGCTGCGTTGGT
TGGATGA

protein sequence of EsuBft151_11a-0001

>EsuBft151_11 ID=EsuBft151_11|Name=EsuBft151_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=818bp
MAAYQDPWALNLVVDELGHPGQDMTRQTPGDSGLQDPHMGPTGATAPLVA
ASVGLGLSFNEFTDNGDPEISGWADKLYEHQPLPESSLPTSLIYPSTLGE
PPTMRTAGTTIVEDLMMASAAATTTAADDSSKKGRVNTRPSAALATSASS
VGNVTNRLLADARSAADGDAVGPAVTAEQPGLLAACRTTRQGSASSTIKA
STNKPTTPDCAERKEPVPKRRKLHASAEPVAADVAAAATTVAKAAATAGS
FSSFKVEAATSMIAARTITPDGPFSATSLSSAAAGTSVERGRGLLSNTSV
SAGAGGTGGRGWRKQGGGGARGAVPAKTAAASIPEFDIYGFNDTSHQAQY
ERMTFLELAKADMERVNLERDFLDKNARFDNAKVAHAMVHERWARARAVF
EGTSRAASVYFVAEQEAKKRHEAACRDKRVAEARVTEAEERSALTRAVVE
EAVKTLDTKRAAKRQAEAALQQAFEANEVAEKRAKAPASGTSGAKGGDNG
CGGGGFSGEGSLSNNRKRDVDGTLPPSTAVTRAINKRGDVQQHVTAKGLG
SVGDGDTEKEATAEEGQPAAKLPAMMGVNPLSDEQERQFYVRGLEIERQI
RARVASSADNSVAAKQETPATTTTTTEAGELAFFAAADTTTLQPQAATTT
ATAALELALEAVDSELAAAEGSMKTAAVSAGRATAELDSVRLAPDLQGAV
RAVAETADAHRDALDKAGLYVSWVNNEVLAQRGLRAWSDKLLRAAVLAWD
AREKARKALNRAGERMSRAVCLLQGFPRGKQMNVSRHALFKAVVENQHQL
CQLNALKREEEEEAALVG

mRNA from alignment at Scaffold_392:226893..230044-

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft151_11a-0001 ID=EsuBft151_11a-0001|Name=EsuBft151_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3152bp|location=Sequence derived from alignment at Scaffold_392:226893..230044- (Ectocarpus subulatus male Bft15b)
ATGGCGGCTTATCAAGACCCGTGGGCACTAAATCTCGTGGTAGACGAACT
GGGCCATCCCGGGCAAGACATGACGAGGCAGACGCCTGGAGATTCCGGCC
TCCAGGACCCACACATGGGACCAACAGGCGCTACTGCTCCTTTGGTGGCT
GCCAGTGTTGGCCTCGGGCTCTCGTTTAATGAATTCACGGACAACGGAGA
CCCGGAAATATCGGTGAGTTTCTTCGCATAGCGTAATGCCGGGTACGCAC
TGTAGTCTACGTATCGCATTTGTTTGTTGTACAAAATATTTTTATCAAGC
ACGTAGTCTACATGTAGGACAGTTTCACGAAAAGCTGTAGTTGAGAAAAT
TGCTGTGGTTGCCTCGCCATCTCTTCTGTCGTGCAAATGGTCGTGTAAGT
TGCCGTCGCGACGGTTGATAAACTTCCATGCGCTCATATTCCTAGTCGCG
GCCAACAATAAGGTATTCTGCGTTTCATGAGGCAGCCATTCTTCATGTAC
CCTTGATGTTGAAAATACTTCTGACACACATGTTTCGGCATTGTGCGCCG
TAGCACGCCGGACGGAACCCCCTTCCGGTCTACGTGACAGATAGATGAAG
AGGTTGACCTTTTAGAGTGTATTTCAGCCGCTGCGAACACAAAAGGTGGA
ATGTATCTAATCGTCATCTTTGTTTCACGTGCTCAAACTCGTGCCACAAA
ATGCGTCTTCTCACGTATGAGTTCCTGCTTCATTTGCTTCACGGTACTAG
TGACTTACAGCACGAGCCCTCTCAAATAGGAGTGAGTATGAATAACGCGC
TCAATCTGCTTATCACCAACCGTCTGTCGAAAACCCAGCCAACAAAAATC
CACTCCCTTTCCTGTGCTCCTGCCGGCGCGCCAGATCAGCAACGACCGCG
TCTCTCAGGGATGGGCCGACAAACTGTACGAGCACCAACCGCTCCCAGAA
TCTAGTCTCCCCACGTCATTGATTTACCCATCGACCTTGGGAGAACCACC
TACCATGAGAACGGCAGGAACCACAATCGTGGAAGATCTGATGATGGCGT
CCGCTGCTGCTACTACAACCGCCGCTGACGATTCGTCAAAGAAAGGAAGA
GTCAACACGAGGCCGTCGGCGGCCCTCGCTACTTCCGCGTCGTCCGTTGG
GAACGTGACTAACAGGCTTTTGGCGGATGCTCGTTCTGCTGCTGATGGTG
ATGCCGTTGGGCCTGCTGTCACTGCCGAGCAGCCAGGCTTGCTCGCGGCG
TGCCGCACCACCAGGCAGGGGTCTGCTTCCTCCACTATCAAGGCATCGAC
GAACAAGCCGACCACGCCCGACTGCGCGGAGAGGAAGGAACCGGTGCCCA
AGCGGCGAAAATTGCACGCTTCTGCTGAACCTGTAGCGGCGGATGTGGCG
GCGGCGGCGACGACGGTGGCGAAGGCCGCGGCCACGGCAGGTTCCTTTTC
TTCTTTCAAGGTCGAGGCGGCGACTTCGATGATCGCAGCGAGAACGATAA
CTCCAGATGGTCCTTTTTCGGCAACATCACTGTCATCGGCGGCGGCTGGA
ACAAGTGTGGAGAGAGGGCGGGGGCTACTTTCGAACACTTCGGTGTCGGC
GGGCGCGGGAGGGACGGGCGGCAGGGGGTGGCGGAAGCAAGGAGGCGGCG
GGGCACGCGGGGCCGTGCCCGCCAAGACCGCCGCGGCTAGCATTCCGGAG
TTTGACATCTACGGCTTCAACGACACGTCCCACCAGGCGCAGTACGAGCG
GATGACCTTCCTTGAGCTCGCGAAGGCCGACATGGAGCGCGTCAACCTGG
AGCGCGACTTCCTGGACAAGAACGCCCGCTTCGACAACGCAAAGGTCGCC
CACGCCATGGTCCACGAGCGGTGGGCGAGGGCGAGAGCGGTCTTCGAGGG
GACGTCCAGGGCGGCCAGCGTCTACTTCGTGGCGGAGCAGGAGGCGAAAA
AGAGGCACGAGGCGGCCTGCCGCGACAAGCGGGTCGCGGAGGCGAGGGTG
ACCGAGGCCGAGGAGAGATCGGCGCTCACCCGGGCGGTTGTCGAGGAGGC
CGTGAAGACGCTCGACACCAAACGTGCGGCCAAGAGGCAGGCGGAGGCGG
CCCTCCAGCAGGCTTTTGAGGCCAACGAAGTGGCCGAGAAGAGGGCAAAG
GCGCCGGCGTCCGGAACGAGCGGCGCCAAAGGCGGCGACAACGGCTGCGG
CGGCGGTGGATTTTCTGGCGAGGGATCTTTGTCGAACAATCGGAAACGCG
ACGTCGACGGAACCCTGCCGCCATCTACTGCGGTGACAAGAGCGATCAAC
AAACGTGGCGACGTCCAGCAACATGTTACGGCCAAGGGTCTGGGCAGTGT
CGGTGATGGCGACACGGAGAAAGAGGCCACTGCCGAGGAAGGACAACCCG
CGGCAAAGCTCCCTGCGATGATGGGCGTCAACCCCCTGTCCGACGAGCAA
GAGCGACAGTTTTACGTGAGGGGACTCGAGATCGAGCGCCAGATCAGGGC
CAGAGTGGCGTCATCGGCCGACAACAGCGTCGCAGCCAAGCAGGAAACAC
CGGCCACCACCACCACCACCACCGAAGCGGGAGAGCTAGCGTTTTTCGCG
GCTGCCGACACCACCACGTTACAGCCACAAGCCGCGACCACCACGGCCAC
CGCCGCCCTCGAGCTCGCGCTTGAGGCGGTCGATTCCGAGCTCGCCGCCG
CCGAGGGGAGCATGAAGACCGCCGCCGTCTCCGCGGGGCGTGCGACCGCC
GAGCTTGACTCGGTCAGGCTCGCCCCCGACCTGCAGGGGGCCGTCCGGGC
GGTGGCCGAGACCGCCGACGCCCACCGGGACGCTCTGGACAAGGCCGGGC
TGTACGTGTCCTGGGTGAACAACGAGGTGCTCGCGCAGAGGGGCCTGCGG
GCCTGGTCCGACAAGCTCTTGCGCGCCGCCGTGCTCGCCTGGGACGCCAG
GGAGAAGGCCCGAAAGGCACTCAACAGGGCCGGGGAGAGGATGTCGAGGG
CGGTGTGCCTCCTGCAGGGGTTCCCGCGGGGCAAACAGATGAACGTGTCC
CGCCATGCCCTTTTCAAGGCCGTCGTGGAGAACCAGCACCAGCTTTGCCA
GCTCAACGCTCTGAAGCGGGAGGAGGAGGAAGAAGCTGCGTTGGTTGGAT
GA

Coding sequence (CDS) from alignment at Scaffold_392:226893..230044-

>EsuBft151_11a-0001 ID=EsuBft151_11a-0001|Name=EsuBft151_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2457bp|location=Sequence derived from alignment at Scaffold_392:226893..230044- (Ectocarpus subulatus male Bft15b)
ATGGCGGCTTATCAAGACCCGTGGGCACTAAATCTCGTGGTAGACGAACT
GGGCCATCCCGGGCAAGACATGACGAGGCAGACGCCTGGAGATTCCGGCC
TCCAGGACCCACACATGGGACCAACAGGCGCTACTGCTCCTTTGGTGGCT
GCCAGTGTTGGCCTCGGGCTCTCGTTTAATGAATTCACGGACAACGGAGA
CCCGGAAATATCGGGATGGGCCGACAAACTGTACGAGCACCAACCGCTCC
CAGAATCTAGTCTCCCCACGTCATTGATTTACCCATCGACCTTGGGAGAA
CCACCTACCATGAGAACGGCAGGAACCACAATCGTGGAAGATCTGATGAT
GGCGTCCGCTGCTGCTACTACAACCGCCGCTGACGATTCGTCAAAGAAAG
GAAGAGTCAACACGAGGCCGTCGGCGGCCCTCGCTACTTCCGCGTCGTCC
GTTGGGAACGTGACTAACAGGCTTTTGGCGGATGCTCGTTCTGCTGCTGA
TGGTGATGCCGTTGGGCCTGCTGTCACTGCCGAGCAGCCAGGCTTGCTCG
CGGCGTGCCGCACCACCAGGCAGGGGTCTGCTTCCTCCACTATCAAGGCA
TCGACGAACAAGCCGACCACGCCCGACTGCGCGGAGAGGAAGGAACCGGT
GCCCAAGCGGCGAAAATTGCACGCTTCTGCTGAACCTGTAGCGGCGGATG
TGGCGGCGGCGGCGACGACGGTGGCGAAGGCCGCGGCCACGGCAGGTTCC
TTTTCTTCTTTCAAGGTCGAGGCGGCGACTTCGATGATCGCAGCGAGAAC
GATAACTCCAGATGGTCCTTTTTCGGCAACATCACTGTCATCGGCGGCGG
CTGGAACAAGTGTGGAGAGAGGGCGGGGGCTACTTTCGAACACTTCGGTG
TCGGCGGGCGCGGGAGGGACGGGCGGCAGGGGGTGGCGGAAGCAAGGAGG
CGGCGGGGCACGCGGGGCCGTGCCCGCCAAGACCGCCGCGGCTAGCATTC
CGGAGTTTGACATCTACGGCTTCAACGACACGTCCCACCAGGCGCAGTAC
GAGCGGATGACCTTCCTTGAGCTCGCGAAGGCCGACATGGAGCGCGTCAA
CCTGGAGCGCGACTTCCTGGACAAGAACGCCCGCTTCGACAACGCAAAGG
TCGCCCACGCCATGGTCCACGAGCGGTGGGCGAGGGCGAGAGCGGTCTTC
GAGGGGACGTCCAGGGCGGCCAGCGTCTACTTCGTGGCGGAGCAGGAGGC
GAAAAAGAGGCACGAGGCGGCCTGCCGCGACAAGCGGGTCGCGGAGGCGA
GGGTGACCGAGGCCGAGGAGAGATCGGCGCTCACCCGGGCGGTTGTCGAG
GAGGCCGTGAAGACGCTCGACACCAAACGTGCGGCCAAGAGGCAGGCGGA
GGCGGCCCTCCAGCAGGCTTTTGAGGCCAACGAAGTGGCCGAGAAGAGGG
CAAAGGCGCCGGCGTCCGGAACGAGCGGCGCCAAAGGCGGCGACAACGGC
TGCGGCGGCGGTGGATTTTCTGGCGAGGGATCTTTGTCGAACAATCGGAA
ACGCGACGTCGACGGAACCCTGCCGCCATCTACTGCGGTGACAAGAGCGA
TCAACAAACGTGGCGACGTCCAGCAACATGTTACGGCCAAGGGTCTGGGC
AGTGTCGGTGATGGCGACACGGAGAAAGAGGCCACTGCCGAGGAAGGACA
ACCCGCGGCAAAGCTCCCTGCGATGATGGGCGTCAACCCCCTGTCCGACG
AGCAAGAGCGACAGTTTTACGTGAGGGGACTCGAGATCGAGCGCCAGATC
AGGGCCAGAGTGGCGTCATCGGCCGACAACAGCGTCGCAGCCAAGCAGGA
AACACCGGCCACCACCACCACCACCACCGAAGCGGGAGAGCTAGCGTTTT
TCGCGGCTGCCGACACCACCACGTTACAGCCACAAGCCGCGACCACCACG
GCCACCGCCGCCCTCGAGCTCGCGCTTGAGGCGGTCGATTCCGAGCTCGC
CGCCGCCGAGGGGAGCATGAAGACCGCCGCCGTCTCCGCGGGGCGTGCGA
CCGCCGAGCTTGACTCGGTCAGGCTCGCCCCCGACCTGCAGGGGGCCGTC
CGGGCGGTGGCCGAGACCGCCGACGCCCACCGGGACGCTCTGGACAAGGC
CGGGCTGTACGTGTCCTGGGTGAACAACGAGGTGCTCGCGCAGAGGGGCC
TGCGGGCCTGGTCCGACAAGCTCTTGCGCGCCGCCGTGCTCGCCTGGGAC
GCCAGGGAGAAGGCCCGAAAGGCACTCAACAGGGCCGGGGAGAGGATGTC
GAGGGCGGTGTGCCTCCTGCAGGGGTTCCCGCGGGGCAAACAGATGAACG
TGTCCCGCCATGCCCTTTTCAAGGCCGTCGTGGAGAACCAGCACCAGCTT
TGCCAGCTCAACGCTCTGAAGCGGGAGGAGGAGGAAGAAGCTGCGTTGGT
TGGATGA