Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FNE3 |
| ProteomeId | EsuBft1019_2 |
| Protein domains | PS51257 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 41 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 2.69e-61 |
| EggNOG OGs | KOG3777@1|root,KOG3777@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | zinc finger CCCH-type containing |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1019_2a-0001 ID=EsuBft1019_2a-0001|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=414bp|location=Sequence derived from alignment at Scaffold_392:61467..63681- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAAGGTCGTCGGTCTTGGTCTCGTCAGCATACTCACCGCGTGCTACCC
TGGGATGATTTCTCCCCACCAGGACGGTTTGCTCCAGATGTTTGCGTACT
CCCACGAAGGCGCGGACATCGGCGTGAGGGTGGCGGCCTTGAAGGCGGCC
TGTTCCTACCTCCAGCGCTTGATTCCGGGTGCTGTCGCGTCCGCTTCTCT
GTGGCCGAAGATGACGTCCGTCGTGGAGGCCGCGGCTGACTCCGGGGATC
CAGTCGCTGCCCAAGAAGCACGGGAGGTGGTCGACGGGATTACCATCGAG
CAGTCCGGGGCCGCAGGGGGGTACTCAGAGGGGACCAGCCTCGAAACGAG
CTGCCCACCCTGGAAGAAGTTGATGTGCTCCGGCCATCCGTTTCAGGCTC
TCAGACAGGTGTAA back to topprotein sequence of EsuBft1019_2a-0001 >EsuBft1019_2 ID=EsuBft1019_2|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=137bp
MKVVGLGLVSILTACYPGMISPHQDGLLQMFAYSHEGADIGVRVAALKAA
CSYLQRLIPGAVASASLWPKMTSVVEAAADSGDPVAAQEAREVVDGITIE
QSGAAGGYSEGTSLETSCPPWKKLMCSGHPFQALRQV back to topmRNA from alignment at Scaffold_392:61467..63681- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1019_2a-0001 ID=EsuBft1019_2a-0001|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2215bp|location=Sequence derived from alignment at Scaffold_392:61467..63681- (Ectocarpus subulatus male Bft15b)
ATGAAGGTCGTCGGTCTTGGTCTCGTCAGCATACTCACCGCGTGCTACCC
TGGGATGATTTCTCCCCACCAGGACGGTTTGCTCCAGGTATCTCGAGGTT
GTGAAGGAGAAAAGGTCTTTGTGTGGATGTGTGTGTACTTTCTTCTAAGA
AAAAGGAGATGCACCAGAAGGGACGGTGTCGCGGTTGAAGCGAGTCGGGG
CCGGGGCACCGGGGATAGTTGTGTTTTTTGTTCTTCCCGTAGCAAGCGAG
GGGAGTGTTGCCGCGGGATGGCACTTCGCTAGCGCGATCTGCAGGTAGCA
GTATTGCCCCCCCTTTCGGCGACCGGTGGGACGTCTTTCGCTCGGAGGAA
AATCCAAATCACCCCAGAAGATCGTGCGAACACATTCCAAGGTTAGCTTG
GCTGAGCTGACATTTAAGGCTGCCACTCCCTCCCAACAATCTTCAACTTC
CTCTCCTCCCTGCGCTGTGATTGCCGTGATTGCTGCTATGGCGGCGCTCT
TCTTTCTGACATCGTACCGTGTGCTCTGCTCGGCGTTGACAACGCGTGTG
TGCTTCTTGGGGTGGCCTAATCGGCCTGCAGATGTTTGCGTACTCCCACG
AAGGCGCGGACATCGGCGTGAGGGTGGCGGCCTTGAAGGCGGCCTGTTCC
TACCTCCAGCGCTTGATTCCGGGTTTGTAACACTTATTGTTGCACCTCGG
CCACATGGTTAATGCCTCAAATGTCCCGTGTTGTTGTTGCTATGTTCGGT
TGTGGTGGAGGCGGGAAAGGTCGCGGTGGATTGCACCCCCTCCAACAACG
CCATGGTCGACGCGACGCGGTGCTTTTTCGGTCGCAGTTGTGCCTATCAC
TCTCGTCGTGTGTTGACGTCGTTAGTCTGGTTGATTCCCGATGCTACTTG
CTGTTGCTGGGTTGTTTGCCACAGCTGTGGTCGTGGGCCGTGTTGTCAGT
CACCCCGAGCCAAGCACGGGAACACACTGAAGTAGGTGTACACCATGGTA
AACATGGCATGTGGTGTCCTTTCTTTGTGACACCCTCCATCGGTCTGCTG
TGTCCTTGTCTCGCCTGCCTCTAAACTCACAAGTCCTCGAACTTCATGCA
GCTCAAGAATTGAAACACTGGATGCTCCCCCGTCCATTCGTAAAGCGCGA
CAAGTTTAATATGAACCTCCGAATTCTGATTGGGTCCATCTGGAAGAGCA
ACCAACCGTGCTTCGTCGTCGTCACATTCGTGGGCAACAGTCAAATGTCA
ACCGTCGAGCTATTCACGGCAACCAATGGGTGAACCCCTCGCCGCCTCTT
CCTCCCCCTCGTGCGTATGCCAACGGCTCATCATGTTTTGGCCTCCTGCT
CTCAGGGCCGTCAGGTGCTGTCGCGTCCGCTTCTCTGTGGCCGAAGATGA
CGTCCGTCGTGGAGGTAAGTGTTCGCCTTTTTTTTTCTCAAGTGAGACTC
ACTTATTCTACGTGTTAGTAGCTTGTACACCAGGATGATAATCCGGGCCG
ACATGGCGGTTGGTTTTCAGTGTTGAAAAGGAAGTGAGTTGTGAAATTTG
AATGCAGGAACGAAACGACAAGAAAAAACGAAATAGAACCTGACGTAGGC
ACCGAAACGAAACTAAACAGAACGGGCCGAAACGGAACGAAAACGGGAGC
GTAACAGAACAGAACACGACGAGGCGAAAACCGAACGTAACGAAACTCCC
GCGTGTACACAAATCTAACCTGCTTACGGGATTTGTTCTTCTTCGTCTTG
GGCATGTTGTTGTCTATAACGCACCTCACGCAGGCCGCGGCTGACTCCGG
GGATCCAGTCGCTGCCCAAGAAGCACGGGAGGTGGTCGACGGGATTACCA
TCGAGCAGTCCGGGGCCGCAGGGGGGTACTCAGAGGGGACCAGCCTCGAA
ACGAGCTGCCCACCCTGGAAGAAGTATGTGAGAGAGAGAGCACTTGTTTG
TGTGTGTTGATGGTTTGGTCTGTACCGGTGCTTGCGAGTGTGGTCGACCA
ATTCCAACCCAACCGTGCTTGCGAGGCTTATGTGGAGTCGATCAGCCTTC
AAGTGTTCTTCGGGCAAGGAGGAAGAGATCATGACGGAAGAAAGCCGGAC
TATTTGGTACGTCTTGCCTTCGGTAGCGTTCATTCATGTCGTTTTCACCC
AAGGTTCAGACACACGCAGGTTGATGTGCTCCGGCCATCCGTTTCAGGCT
CTCAGACAGGTGTAA back to topCoding sequence (CDS) from alignment at Scaffold_392:61467..63681- >EsuBft1019_2a-0001 ID=EsuBft1019_2a-0001|Name=EsuBft1019_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=414bp|location=Sequence derived from alignment at Scaffold_392:61467..63681- (Ectocarpus subulatus male Bft15b)
ATGAAGGTCGTCGGTCTTGGTCTCGTCAGCATACTCACCGCGTGCTACCC
TGGGATGATTTCTCCCCACCAGGACGGTTTGCTCCAGATGTTTGCGTACT
CCCACGAAGGCGCGGACATCGGCGTGAGGGTGGCGGCCTTGAAGGCGGCC
TGTTCCTACCTCCAGCGCTTGATTCCGGGTGCTGTCGCGTCCGCTTCTCT
GTGGCCGAAGATGACGTCCGTCGTGGAGGCCGCGGCTGACTCCGGGGATC
CAGTCGCTGCCCAAGAAGCACGGGAGGTGGTCGACGGGATTACCATCGAG
CAGTCCGGGGCCGCAGGGGGGTACTCAGAGGGGACCAGCCTCGAAACGAG
CTGCCCACCCTGGAAGAAGTTGATGTGCTCCGGCCATCCGTTTCAGGCTC
TCAGACAGGTGTAA back to top
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