EsuBft1019_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_4a	EsuBft1019_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_392 51495..54639 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_4a-0001-exon	EsuBft1019_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 51495..54639 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_4a-0001-cds	EsuBft1019_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_392 51495..53297 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_4a-0001-exon	agat-three_prime_utr-199	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_392 53298..54639 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_4a-0001	EsuBft1019_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_392 51495..53297 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_392:51495..54639+
coding sequence from alignment at Scaffold_392:51495..54639+

spliced messenger RNA

>EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3145bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT
CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA
ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT
ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT
GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC
AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG
CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA
GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC
GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG
GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG
CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC
GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC
ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA
AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG
AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG
ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG
AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG
ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT
GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC
CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG
CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC
GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA
GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG
GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC
CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG
GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC
CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT
CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC
ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC
GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT
TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG
ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG
GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT
TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC
GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG
TAGCGGTGCTCGGCTGAGAACAAGTCGGTGCGTCGCTAGGTGGACTCGCT
CCTTGGTTTGTGGTTTGAAGGCTGGTGGTATGTTTTGTGAAGCCCGGCAG
TTGTGTGTACTGACCCGTTTTGATGAAAGAGCCACAGCAGTTTGTAGTTT
TTTTTTTCACGTTTTTTTTTTTGTCCCTTTTGCTTTGCTCTCTGCTGACG
CGTGTACGACTGGTTTTGTTCGGTGGGTATGTTGGATTTTCATCTCAGAG
TTCCTTCCTTTGCCTTCTCGCGCCTACCGCAGAGCAGCGTGGTCCTTCTC
TTGGGGTGTGATAGACATGCATGCGCCTGTACTTGTAGTTCAGAAAGTAC
CGTGAGTGACACAAGAAAGCACACCCTGGTGATAGGATTGTTCAAATTAT
GAAGCTTATCACCTAGTGTGCTTTCCTGGAATGGGTGTGTTATCTTGTGT
CACCGGTGTGATAATGTACACGTTGACGGAGCCCGCAATCAGGGGATGAT
AAGCCAAGGGGATGTGATACGCCAAAGCGGGTGTGATAAAATTTTTGCCT
GCTCCACCATTCCTTGAAGAGGTGTGATAAATGAAGGGGTGTGTAATAAC
ACTCAGCAAACTCTGTTGCGGGGTCACCAACCGACAATGTTGTGCTGGCC
TCGGCGGACGCTGTTGAGCGGGCTTTGGCAGCACTTGCGGTGGCTGGTGC
ATTTGGCGTCTCATCATTTGACTTGGTCGCGGGTTGCTTCGAGAAAAATG
ATGTGATCGCTCATGGAGGCGCCGGCGTAGACATTGACACCACCGTCTGA
GCGACGTCACTTCCAGCGGGGTTGTTTCAGGAGGGTTGTCTACCTCCTTC
ACCTCCGTATTGTCCTCGTTTGTGTGCATACCAGCTGTGTGCTTCTGTTC
GTGTGTGCATGTCGGGCTGTGCACATCCGTGCCACCAGCCACTAGCCACG
AGGTGTGAAAATGGAGGCTCCGTGATTGGAAATGCGGCGAGACTGTAGGG
GGTGTGCTATCTTTGATGTCACCGGTGTAAGAAATTGGCGTTTTTTTCAG
AGTAAAATTATATATATCACCGGGTGTGCTTTCCTGGAGAGGTGTGTTGG
GGGTGTGCTTTCTTGTGTCACTTACGGTAAGGTTCGATGTTAGTCCCGTG
TGGATGGTGCTTCCATAGAATAGCAAACGACGAAATTCTTACCATCGTTC
CGCGTTACGGTGCTCATGCGCCAGTTGGGGACGAAGATCACGCACGGAAT
CCCTCGCTTCTTGAAGAACTGTCGGGACAAAAGCACGGGAGGGCCGAAAG
GCGGGCAGAGGTTCAAATCGACCGAAGAGTTTTTTTGTAATTATT

protein sequence of EsuBft1019_4a-0001

>EsuBft1019_4 ID=EsuBft1019_4|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=600bp
MAGVLVEEFLPYLSEAVKPLLVALSINAEIKHSNAPDATLAKDELEAEGL
TAMAVDLRGVGRQVFGVNTSLMQAKESACKTLYQYTEDLGEGFAPHAAET
LAVVIPNLGPRNAIGVQVISSAIVPKLVALAERRAAEAVAAGAGAKEVQE
AQAMLDAAVDALTERLSGGSGNDCAQQQQQQQQQQREEPLERRDQERQCV
AADALSDLLEGRCGGGTQGQKPSVIRLSDERLLKTVTGLRNVAAASIGRT
RAALAAAAAGAGGGLGGQGGMTGAVDAAELRELEDGEEELLVSVVDATGW
MIKGRKETFLPAFEAVMRPLVVQLLDPAAVAAVPPSHRSFGLCMAIDVLE
HCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQ
DFDAHSAEALGLLLALARKDPGDDNDDDDGWGEGAVRDNAVSAAFRVLIH
RPGPVFAAFPPAVVGSLLDSLPITVDVAEGQVCHRRVVDLAFARHELFFG
GGGDGALHAAAVVPKLVTAMAGMMEYQSRGNGGDGYGSQEELWERQLVDR
ETREKAEEVVALVKAVFPGEFQRAWEGLGEAGQRALQMPTSSVCSRADES

mRNA from alignment at Scaffold_392:51495..54639+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3145bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT
CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA
ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT
ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT
GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC
AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG
CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA
GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC
GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG
GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG
CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC
GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC
ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA
AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG
AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG
ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG
AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG
ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT
GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC
CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG
CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC
GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA
GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG
GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC
CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG
GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC
CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT
CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC
ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC
GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT
TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG
ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG
GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT
TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC
GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG
TAGCGGTGCTCGGCTGAGAACAAGTCGGTGCGTCGCTAGGTGGACTCGCT
CCTTGGTTTGTGGTTTGAAGGCTGGTGGTATGTTTTGTGAAGCCCGGCAG
TTGTGTGTACTGACCCGTTTTGATGAAAGAGCCACAGCAGTTTGTAGTTT
TTTTTTTCACGTTTTTTTTTTTGTCCCTTTTGCTTTGCTCTCTGCTGACG
CGTGTACGACTGGTTTTGTTCGGTGGGTATGTTGGATTTTCATCTCAGAG
TTCCTTCCTTTGCCTTCTCGCGCCTACCGCAGAGCAGCGTGGTCCTTCTC
TTGGGGTGTGATAGACATGCATGCGCCTGTACTTGTAGTTCAGAAAGTAC
CGTGAGTGACACAAGAAAGCACACCCTGGTGATAGGATTGTTCAAATTAT
GAAGCTTATCACCTAGTGTGCTTTCCTGGAATGGGTGTGTTATCTTGTGT
CACCGGTGTGATAATGTACACGTTGACGGAGCCCGCAATCAGGGGATGAT
AAGCCAAGGGGATGTGATACGCCAAAGCGGGTGTGATAAAATTTTTGCCT
GCTCCACCATTCCTTGAAGAGGTGTGATAAATGAAGGGGTGTGTAATAAC
ACTCAGCAAACTCTGTTGCGGGGTCACCAACCGACAATGTTGTGCTGGCC
TCGGCGGACGCTGTTGAGCGGGCTTTGGCAGCACTTGCGGTGGCTGGTGC
ATTTGGCGTCTCATCATTTGACTTGGTCGCGGGTTGCTTCGAGAAAAATG
ATGTGATCGCTCATGGAGGCGCCGGCGTAGACATTGACACCACCGTCTGA
GCGACGTCACTTCCAGCGGGGTTGTTTCAGGAGGGTTGTCTACCTCCTTC
ACCTCCGTATTGTCCTCGTTTGTGTGCATACCAGCTGTGTGCTTCTGTTC
GTGTGTGCATGTCGGGCTGTGCACATCCGTGCCACCAGCCACTAGCCACG
AGGTGTGAAAATGGAGGCTCCGTGATTGGAAATGCGGCGAGACTGTAGGG
GGTGTGCTATCTTTGATGTCACCGGTGTAAGAAATTGGCGTTTTTTTCAG
AGTAAAATTATATATATCACCGGGTGTGCTTTCCTGGAGAGGTGTGTTGG
GGGTGTGCTTTCTTGTGTCACTTACGGTAAGGTTCGATGTTAGTCCCGTG
TGGATGGTGCTTCCATAGAATAGCAAACGACGAAATTCTTACCATCGTTC
CGCGTTACGGTGCTCATGCGCCAGTTGGGGACGAAGATCACGCACGGAAT
CCCTCGCTTCTTGAAGAACTGTCGGGACAAAAGCACGGGAGGGCCGAAAG
GCGGGCAGAGGTTCAAATCGACCGAAGAGTTTTTTTGTAATTATT

Coding sequence (CDS) from alignment at Scaffold_392:51495..54639+

>EsuBft1019_4a-0001 ID=EsuBft1019_4a-0001|Name=EsuBft1019_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1803bp|location=Sequence derived from alignment at Scaffold_392:51495..54639+ (Ectocarpus subulatus male Bft15b)
ATGGCGGGGGTCCTGGTCGAAGAGTTCCTCCCCTACCTCAGCGAAGCCGT
CAAGCCACTCCTGGTGGCCCTGTCCATCAACGCGGAGATCAAGCACTCCA
ACGCCCCCGACGCCACCCTCGCGAAGGACGAGCTAGAGGCGGAGGGGCTT
ACAGCGATGGCGGTGGACCTGAGGGGCGTCGGCCGCCAGGTCTTCGGCGT
GAACACGAGCCTCATGCAGGCCAAGGAGTCGGCCTGCAAGACTCTCTACC
AGTACACGGAGGACCTTGGGGAAGGGTTCGCCCCCCACGCCGCGGAGACG
CTAGCGGTCGTGATCCCGAACCTGGGGCCCCGTAATGCGATAGGGGTGCA
GGTCATCAGCTCCGCGATTGTGCCGAAGCTGGTCGCCCTGGCAGAACGCC
GTGCCGCCGAAGCTGTGGCCGCGGGGGCGGGAGCGAAGGAAGTGCAGGAG
GCGCAGGCCATGCTGGACGCTGCTGTAGACGCGCTTACGGAGAGGTTAAG
CGGCGGCAGTGGGAATGACTGTGCCCAGCAGCAGCAGCAGCAACAGCAGC
AGCAGCGAGAAGAGCCATTGGAGCGGAGGGACCAGGAGCGACAGTGCGTC
GCCGCGGATGCCCTCTCCGACCTCCTGGAGGGGCGCTGCGGGGGTGGCAC
ACAGGGGCAGAAACCGAGCGTGATTCGTCTCTCGGACGAGAGGCTCCTGA
AGACGGTGACGGGGTTGCGAAACGTCGCCGCCGCGTCGATCGGGAGAACG
AGGGCGGCATTGGCGGCGGCGGCGGCGGGGGCGGGAGGAGGGCTTGGCGG
ACAGGGAGGGATGACGGGGGCCGTTGACGCGGCGGAACTCCGGGAGCTCG
AAGACGGAGAGGAGGAGCTCCTCGTCTCGGTGGTCGACGCCACGGGGTGG
ATGATCAAGGGCCGAAAGGAAACCTTCCTGCCGGCCTTTGAGGCGGTCAT
GAGGCCGCTCGTCGTGCAGCTCCTGGACCCCGCCGCCGTCGCTGCCGTCC
CTCCGTCGCACCGCTCCTTCGGGCTCTGCATGGCGATCGACGTCCTTGAG
CACTGCGGGGAGGGGGGCCGAAACTCGGTATTCCAGGCGCCCCTCCTGCC
GGCCCTCCTGCAGGGGGCCCGCGGGGACGATCCGGCGGCGGCGTCCACCA
GGCAGGCCTGCGCGTACGGCCTGGGCGTGGCCGCGGAGCTCGGAGGGCAG
GACTTCGACGCCCACAGCGCAGAGGCTCTGGGGCTTCTGCTCGCGCTCGC
CCGGAAGGACCCCGGCGACGACAACGACGACGATGACGGTTGGGGAGAGG
GTGCGGTAAGGGACAACGCGGTGTCTGCCGCGTTCCGAGTGTTGATCCAC
CGCCCCGGCCCGGTCTTCGCGGCGTTCCCCCCTGCCGTGGTGGGGTCCCT
CCTGGACTCGCTGCCGATAACGGTGGACGTGGCTGAGGGACAGGTGTGCC
ACCGGAGAGTCGTCGACCTCGCCTTCGCCCGCCACGAGCTGTTCTTCGGC
GGTGGCGGGGACGGGGCCTTGCATGCCGCGGCCGTTGTCCCCAAGCTCGT
TACGGCCATGGCGGGGATGATGGAGTACCAGTCCCGGGGGAACGGCGGGG
ACGGCTACGGCAGCCAGGAAGAGCTGTGGGAGCGGCAGCTCGTTGACCGG
GAGACGAGGGAGAAGGCGGAGGAGGTCGTGGCGTTGGTGAAGGCGGTGTT
TCCAGGGGAGTTCCAGAGGGCGTGGGAGGGGCTCGGGGAAGCGGGGCAAC
GGGCGTTGCAGATGCCCACCAGCAGCGTTTGTTCACGGGCGGACGAGTCG
TAG