EsuBft1019_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1019_7a-0001
Unique NameEsuBft1019_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_392contigScaffold_392:34568..34995 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1019_7
Ownerapollo_admin@sb-roscoff.fr
Nb exon1
Length42
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_7aEsuBft1019_7aEctocarpus subulatus male Bft15bgeneScaffold_392 34568..34995 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_7a-0001-exonEsuBft1019_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_392 34568..34995 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_7a-0001-exonagat-three_prime_utr-200Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_392 34568..34611 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_7a-0001-cdsEsuBft1019_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_392 34612..34905 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_7a-0001-exonagat-five_prime_utr-115Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_392 34906..34995 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1019_7a-0001EsuBft1019_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_392 34612..34905 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1019_7a-0001 ID=EsuBft1019_7a-0001|Name=EsuBft1019_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=428bp|location=Sequence derived from alignment at Scaffold_392:34568..34995- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TATAGCCCACCAGCTGCCCCCCACGGCAGCAGCTCAAGCAGCTGTACAGC
AGTAGGCCATCATAGCTAGCGAGACACACAGCTCCCACGGATGCCTTGCG
CCGCGGTTCCCGCTGCCTGGCAACGCCGGACCACACACCCGCCCCCCCGC
TGTTTACGAACCACCAATGCCGTGTCTGCGGAGGCTACCTTCATGGACAG
TGCGGTGTGCATGACCCGCTTGGCGACAACGAGATGCACCGTGATTGCCA
CGGATGTGTCAACTCGAGCAACCGCAAGGAATCAAGCACAGACTCGACTG
CTGGGGCTGCATCTTCGAAGCGCCCCTGCCCGGGCGGGCGGGCAACGGGG
AAGGAGAAGCGGGCGGGTGCACTGGGCAGCTTGAAACCCGTTGGCAACAC
CGCACGTAGGAAAGTTCGTGGCGCCGAA
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protein sequence of EsuBft1019_7a-0001

>EsuBft1019_7 ID=EsuBft1019_7|Name=EsuBft1019_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=97bp
MPCAAVPAAWQRRTTHPPPRCLRTTNAVSAEATFMDSAVCMTRLATTRCT
VIATDVSTRATARNQAQTRLLGLHLRSAPARAGGQRGRRSGRVHWAA
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mRNA from alignment at Scaffold_392:34568..34995-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1019_7a-0001 ID=EsuBft1019_7a-0001|Name=EsuBft1019_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=428bp|location=Sequence derived from alignment at Scaffold_392:34568..34995- (Ectocarpus subulatus male Bft15b)
TATAGCCCACCAGCTGCCCCCCACGGCAGCAGCTCAAGCAGCTGTACAGC
AGTAGGCCATCATAGCTAGCGAGACACACAGCTCCCACGGATGCCTTGCG
CCGCGGTTCCCGCTGCCTGGCAACGCCGGACCACACACCCGCCCCCCCGC
TGTTTACGAACCACCAATGCCGTGTCTGCGGAGGCTACCTTCATGGACAG
TGCGGTGTGCATGACCCGCTTGGCGACAACGAGATGCACCGTGATTGCCA
CGGATGTGTCAACTCGAGCAACCGCAAGGAATCAAGCACAGACTCGACTG
CTGGGGCTGCATCTTCGAAGCGCCCCTGCCCGGGCGGGCGGGCAACGGGG
AAGGAGAAGCGGGCGGGTGCACTGGGCAGCTTGAAACCCGTTGGCAACAC
CGCACGTAGGAAAGTTCGTGGCGCCGAA
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Coding sequence (CDS) from alignment at Scaffold_392:34568..34995-

>EsuBft1019_7a-0001 ID=EsuBft1019_7a-0001|Name=EsuBft1019_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=294bp|location=Sequence derived from alignment at Scaffold_392:34568..34995- (Ectocarpus subulatus male Bft15b)
ATGCCTTGCGCCGCGGTTCCCGCTGCCTGGCAACGCCGGACCACACACCC
GCCCCCCCGCTGTTTACGAACCACCAATGCCGTGTCTGCGGAGGCTACCT
TCATGGACAGTGCGGTGTGCATGACCCGCTTGGCGACAACGAGATGCACC
GTGATTGCCACGGATGTGTCAACTCGAGCAACCGCAAGGAATCAAGCACA
GACTCGACTGCTGGGGCTGCATCTTCGAAGCGCCCCTGCCCGGGCGGGCG
GGCAACGGGGAAGGAGAAGCGGGCGGGTGCACTGGGCAGCTTGA
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