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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
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| Seed ortholog | 2880.D7FNE2 |
| ProteomeId | EsuBft1019_8 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 16 |
| Hectar predicted targeting category | no signal peptide or anchor |
| Evalue | 1.89e-19 |
| EggNOG OGs | KOG2171@1|root,KOG2171@2759|Eukaryota |
| Ec32 ortholog description | Armadillo-like helical |
| Ec32 ortholog | Ec-22_001410.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K20195,ko:K20221,ko:K20222 |
| KEGG TC | 1.I.1 |
| KEGG Pathway | ko04138,map04138 |
| Description | ribosomal protein import into nucleus |
| COG category | S |
| BRITE | ko00000,ko00001,ko03009,ko04131 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1019_8a-0001 ID=EsuBft1019_8a-0001|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=165bp|location=Sequence derived from alignment at Scaffold_392:32634..32885+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCGTCTGGCCCTCCGGCGGGGGGTATTGGCGAGCTTCTTGGCGCGTT
CACGAGCCCGGACAATGGCGTGAGGCGGAGAGCGGAGCAAGCTTGGGAAG
ACATGAAAATGCGGCTCCCCGATCAGGAACCGCAGGAGGAGGTCCAGCCC
CCCCCTCCCATGTGA back to topprotein sequence of EsuBft1019_8a-0001 >EsuBft1019_8 ID=EsuBft1019_8|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=54bp
MASGPPAGGIGELLGAFTSPDNGVRRRAEQAWEDMKMRLPDQEPQEEVQP
PPPM back to topmRNA from alignment at Scaffold_392:32634..32885+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1019_8a-0001 ID=EsuBft1019_8a-0001|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=252bp|location=Sequence derived from alignment at Scaffold_392:32634..32885+ (Ectocarpus subulatus male Bft15b)
ATGGCGTCTGGCCCTCCGGCGGGGGGTATTGGCGAGCTTCTTGGCGCGTT
CACGAGCCCGGACAATGGCGTGAGGCGGAGAGCGGAGCAAGCTTGGGAAG
ACATGAAAATGCGGCTCCCCGATCAGGTGTGTTCGTGTTGTGTGGGCAAG
CGCGACCGACATATTCAAGTGGAAGGTGCTGCACCCTCCTCGCGATAAAA
ATACCTCAGGCAGGAACCGCAGGAGGAGGTCCAGCCCCCCCCTCCCATGT
GA back to topCoding sequence (CDS) from alignment at Scaffold_392:32634..32885+ >EsuBft1019_8a-0001 ID=EsuBft1019_8a-0001|Name=EsuBft1019_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=165bp|location=Sequence derived from alignment at Scaffold_392:32634..32885+ (Ectocarpus subulatus male Bft15b)
ATGGCGTCTGGCCCTCCGGCGGGGGGTATTGGCGAGCTTCTTGGCGCGTT
CACGAGCCCGGACAATGGCGTGAGGCGGAGAGCGGAGCAAGCTTGGGAAG
ACATGAAAATGCGGCTCCCCGATCAGGAACCGCAGGAGGAGGTCCAGCCC
CCCCCTCCCATGTGA back to top
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