EsuBft1019_11a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft1019_11a-0001
Unique Name	EsuBft1019_11a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_392	contig	Scaffold_392:704..3668 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	7668.SPU_012129-tr
ProteomeId	EsuBft1019_11
Protein domains	Coil
Protein domains	PTHR23227
Protein domains	IPR027124
Protein domains	IPR005135
Owner	apollo_admin@sb-roscoff.fr
Note	craniofacial development protein 2 os:bos taurus gn:cfdp2 pe:1 sv:2 [Automatic annotation]
Nb exon	2
Max annot lvl	33208\|Metazoa
Length	2346
Hectar predicted targeting category	other localisation
Evalue	1.2e-15
EggNOG OGs	KOG1075@1\|root,KOG1075@2759\|Eukaryota,3AJJK@33154\|Opisthokonta,3BZRE@33208\|Metazoa,3DG9F@33213\|Bilateria
Date last modified	2016-06-14
Date creation	2016-06-14
Description	Endonuclease-reverse transcriptase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_11a	EsuBft1019_11a	Ectocarpus subulatus male Bft15b	gene	Scaffold_392 704..3668 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_11a-0001-exon	agat-exon-46378	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 704..2222 +
EsuBft1019_11a-0001-exon	EsuBft1019_11a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_392 2842..3668 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_11a-0001-cds	EsuBft1019_11a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_392 704..2222 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1019_11a-0001	EsuBft1019_11	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_392 704..3668 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_392:704..3668+
coding sequence from alignment at Scaffold_392:704..3668+

spliced messenger RNA

>EsuBft1019_11a-0001 ID=EsuBft1019_11a-0001|Name=EsuBft1019_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2346bp|location=Sequence derived from alignment at Scaffold_392:704..3668+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTTGCGATCGTTGCCTTCACCCCCTTGCACGTGGACCGAGAGAG
ACACGAGACCGCAGCGGCCGTCAAGGCAGCTGCGAAGAAGAAGGCACGAG
AGGGCGACCTATCGTTCGGCACGTTCAACGTACGCACGCTCGCCTACAGC
GGTAGGAACCCCATCGGTCACAACGTGATGACGGTCATGCAGATTTGTTC
CGCGACCGGCTGTGATGTGGTAGGACTTCATGAGACCCGACGAGAGGGGC
AAGGTTCAATTGCACACGACGGGTACGTGATCATCTGGAGTGGCGCCCGT
GCTGGCACCAAGGAAAAGAGGGGCGTACACGGTATGGGCATAGCGATCAA
GGAGGTCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCA
TTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGA
GTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTCCGCACCACCGC
GGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAG
CGATCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCC
AACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCAATGCCAAGATTAT
GGGCGCGTACGGACGCGACATAATGAACAACAGCGGGGAACGACTCCTTG
GACTGGCATCAGACAACCAACTCTCCCTGACCAACACCTACTTCCGGACA
CCGAAAGGGGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGAAAGGA
GAAGTACCGCCTCGACTTCATCCTCATGCGTCAGACGGACCGGCGTTTCG
TGCGTAATGTCTCCGACAACCGTGTCGACTTCAAGGACTCTGACCACAAC
CTCGACTGTCCGCCTCCCCCCCAGTGTCGCACCCAATCGACGAGTGCGGG
GGAACAGCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAG
GACAAACACCTACGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAG
GCGACCCTGAAGGCTATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGC
GGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCATCTCAACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCA
ACAGAAAGGCCATCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTT
TTCCTGGACGGAGATCAAGATCGGTTTGTGTACCTCGGACGTACCATCTC
CGCGGACGAGAAGGCCGACCGGGAGATCAAGAGCCGCAACTGCCGAGCGG
GGAAGTGCTACCGCCGGTACAGTGCTTCGGTGCACGACAGGCGACGGGTC
ATCCTCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCT
ACCATATGGGTGCGCCTCGTGGAGCCGTACAGCGGAGCACTACACGAAGT
TCAATGGAACCCACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAG
CGAAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAAGC
AGGCGGCGAGGAAACCATCGAGGCCACCGTGCGCGAACGGAGACTGTGTT
TCGAGGGCTTTGTTGTGCGCATGGACGACAACCGCCTCCCCAAGCGCATG
CTGTTAGGAGCGATGGCGGAGGGCGTGGGATACCGGGGCGGGCAGGAGAG
CGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAG
ACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTG
TGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCA
CAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAG
AAGCAGAGAGTACGGCCATCGCAGGGCCGAAGAGAAAGAGGGTCGGGGAA
GCGGCGGTGGGGGGGAAGGAACGGCGACCGGGCACTGCTGTAGAAGCGAG
TAGGGCGGCCGAGGCAGCACTTGTGGCGAACTATGTACCTGGCTGA

protein sequence of EsuBft1019_11a-0001

>EsuBft1019_11 ID=EsuBft1019_11|Name=EsuBft1019_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=781bp
MLVAIVAFTPLHVDRERHETAAAVKAAAKKKAREGDLSFGTFNVRTLAYS
GRNPIGHNVMTVMQICSATGCDVVGLHETRREGQGSIAHDGYVIIWSGAR
AGTKEKRGVHGMGIAIKEVMWESVGEEGRTVECISPRLMKVRLQIGRTCG
VTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDA
NARTGRRRDGCCNAKIMGAYGRDIMNNSGERLLGLASDNQLSLTNTYFRT
PKGGVQHTFQSSNKGKEKYRLDFILMRQTDRRFVRNVSDNRVDFKDSDHN
LDCPPPPQCRTQSTSAGEQRKQPDPYRPRAVEEGQTPTGXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQLRGASKNSAFE
ATLKAMLKAARKKRSIAGWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXPSQLEVEEAVREMANRKAIGPDDLPAELIKL
FLDGDQDRFVYLGRTISADEKADREIKSRNCRAGKCYRRYSASVHDRRRV
ILQLKIRLLQAEVVETLPYGCASWSRTAEHYTKFNGTHRQFLTRCIGWSK
RKRSDRPLSYAQALIQAGGEETIEATVRERRLCFEGFVVRMDDNRLPKRM
LLGAMAEGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKNSEV
WYNKVEDGAAWFMRKWHRQEAEASAKRQRAREAEAESTAIAGPKRKRVGE
AAVGGKERRPGTAVEASRAAEAALVANYVPG

mRNA from alignment at Scaffold_392:704..3668+

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1019_11a-0001 ID=EsuBft1019_11a-0001|Name=EsuBft1019_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2965bp|location=Sequence derived from alignment at Scaffold_392:704..3668+ (Ectocarpus subulatus male Bft15b)
ATGCTCGTTGCGATCGTTGCCTTCACCCCCTTGCACGTGGACCGAGAGAG
ACACGAGACCGCAGCGGCCGTCAAGGCAGCTGCGAAGAAGAAGGCACGAG
AGGGCGACCTATCGTTCGGCACGTTCAACGTACGCACGCTCGCCTACAGC
GGTAGGAACCCCATCGGTCACAACGTGATGACGGTCATGCAGATTTGTTC
CGCGACCGGCTGTGATGTGGTAGGACTTCATGAGACCCGACGAGAGGGGC
AAGGTTCAATTGCACACGACGGGTACGTGATCATCTGGAGTGGCGCCCGT
GCTGGCACCAAGGAAAAGAGGGGCGTACACGGTATGGGCATAGCGATCAA
GGAGGTCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCA
TTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGA
GTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTCCGCACCACCGC
GGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAG
CGATCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCC
AACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCAATGCCAAGATTAT
GGGCGCGTACGGACGCGACATAATGAACAACAGCGGGGAACGACTCCTTG
GACTGGCATCAGACAACCAACTCTCCCTGACCAACACCTACTTCCGGACA
CCGAAAGGGGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGAAAGGA
GAAGTACCGCCTCGACTTCATCCTCATGCGTCAGACGGACCGGCGTTTCG
TGCGTAATGTCTCCGACAACCGTGTCGACTTCAAGGACTCTGACCACAAC
CTCGACTGTCCGCCTCCCCCCCAGTGTCGCACCCAATCGACGAGTGCGGG
GGAACAGCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAG
GACAAACACCTACGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAG
GCGACCCTGAAGGCTATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGC
GGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCATCTCAACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCA
ACAGAAAGGCCATCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTT
TTCCTGGACGGAGATCAAGGTCCTCCACGAATTCCACGCCACTCTCGTGG
ACGTGTGGCAGACTGGTGACGTACCACAGCAGTGGAACGATGCCACCATC
AAAGTGCTGTTCAAGAAGGGGGACACAATGGAGTGCGGCATCTACCGGGG
CATCTCTCTCGTCGCACACGCCGGCAAGGTGCTGCTTAAGGTCGTCCCTA
CACGACTGAGCCCCACTGCGAGCGAGAGGGAATCTTCCCGGAGGAGCAGA
GCTGTTTCCGCCCACACCGGTCGACGCTCGACATGCTGTTCGCCATCCAG
CGGCTCCATGAGCTCGCGAGGAAGAAGAGTACTGCGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATCGGTTTGTGT
ACCTCGGACGTACCATCTCCGCGGACGAGAAGGCCGACCGGGAGATCAAG
AGCCGCAACTGCCGAGCGGGGAAGTGCTACCGCCGGTACAGTGCTTCGGT
GCACGACAGGCGACGGGTCATCCTCCAGCTCAAGATCCGGCTACTCCAGG
CTGAAGTGGTGGAGACTCTACCATATGGGTGCGCCTCGTGGAGCCGTACA
GCGGAGCACTACACGAAGTTCAATGGAACCCACCGCCAGTTCCTTACACG
GTGCATCGGCTGGAGCAAGCGAAAACGCTCAGACCGCCCCCTGTCCTATG
CCCAGGCCCTCATCCAAGCAGGCGGCGAGGAAACCATCGAGGCCACCGTG
CGCGAACGGAGACTGTGTTTCGAGGGCTTTGTTGTGCGCATGGACGACAA
CCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGAGGGCGTGGGAT
ACCGGGGCGGGCAGGAGAGCGACTGGGTGTCTCGTCTAGGAGAGGACCTC
GTGGCCTTCAACATGGGAGACGAAAAGGAAGGGGGGAAATGGAAAGAGAG
CGCCAAGAACTCGGAGGTGTGGTACAACAAGGTCGAGGACGGGGCGGCAT
GGTTCATGAGGAAATGGCACAGGCAGGAGGCGGAAGCGTCCGCGAAGCGC
CAGCGCGCGAGGGAAGCAGAAGCAGAGAGTACGGCCATCGCAGGGCCGAA
GAGAAAGAGGGTCGGGGAAGCGGCGGTGGGGGGGAAGGAACGGCGACCGG
GCACTGCTGTAGAAGCGAGTAGGGCGGCCGAGGCAGCACTTGTGGCGAAC
TATGTACCTGGCTGA

Coding sequence (CDS) from alignment at Scaffold_392:704..3668+

>EsuBft1019_11a-0001 ID=EsuBft1019_11a-0001|Name=EsuBft1019_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2346bp|location=Sequence derived from alignment at Scaffold_392:704..3668+ (Ectocarpus subulatus male Bft15b)
ATGCTCGTTGCGATCGTTGCCTTCACCCCCTTGCACGTGGACCGAGAGAG
ACACGAGACCGCAGCGGCCGTCAAGGCAGCTGCGAAGAAGAAGGCACGAG
AGGGCGACCTATCGTTCGGCACGTTCAACGTACGCACGCTCGCCTACAGC
GGTAGGAACCCCATCGGTCACAACGTGATGACGGTCATGCAGATTTGTTC
CGCGACCGGCTGTGATGTGGTAGGACTTCATGAGACCCGACGAGAGGGGC
AAGGTTCAATTGCACACGACGGGTACGTGATCATCTGGAGTGGCGCCCGT
GCTGGCACCAAGGAAAAGAGGGGCGTACACGGTATGGGCATAGCGATCAA
GGAGGTCATGTGGGAGAGTGTGGGCGAGGAAGGTAGGACGGTGGAGTGCA
TTAGCCCGAGGCTGATGAAGGTGCGTCTACAAATTGGCCGCACCTGCGGA
GTAACTTTCGTGGTGGGGTACGCCCCCACGGAAACTGTCCGCACCACCGC
GGGCGGTGATGTTAACGCCAAGGACTCCTTCTGGACTGCTCTCGACGCAG
CGATCCGGGAGGTTCACAGCCGTGACCATCTCGTGGTGCTAATGGACGCC
AACGCACGCACTGGTAGGAGGCGAGACGGGTGCTGCAATGCCAAGATTAT
GGGCGCGTACGGACGCGACATAATGAACAACAGCGGGGAACGACTCCTTG
GACTGGCATCAGACAACCAACTCTCCCTGACCAACACCTACTTCCGGACA
CCGAAAGGGGGAGTGCAGCACACATTCCAGAGCTCCAACAAGGGAAAGGA
GAAGTACCGCCTCGACTTCATCCTCATGCGTCAGACGGACCGGCGTTTCG
TGCGTAATGTCTCCGACAACCGTGTCGACTTCAAGGACTCTGACCACAAC
CTCGACTGTCCGCCTCCCCCCCAGTGTCGCACCCAATCGACGAGTGCGGG
GGAACAGCGGAAGCAGCCGGATCCGTATCGACCTCGAGCGGTTGAGGAAG
GACAAACACCTACGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAACTGCGTGGGGCCTCAAAGAACAGCGCCTTCGAG
GCGACCCTGAAGGCTATGCTCAAGGCGGCGCGGAAGAAGCGCAGCATCGC
GGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCATCTCAACTTGAGGTTGAGGAAGCGGTACGGGAAATGGCCA
ACAGAAAGGCCATCGGGCCGGACGACCTACCGGCTGAGCTGATCAAGCTT
TTCCTGGACGGAGATCAAGATCGGTTTGTGTACCTCGGACGTACCATCTC
CGCGGACGAGAAGGCCGACCGGGAGATCAAGAGCCGCAACTGCCGAGCGG
GGAAGTGCTACCGCCGGTACAGTGCTTCGGTGCACGACAGGCGACGGGTC
ATCCTCCAGCTCAAGATCCGGCTACTCCAGGCTGAAGTGGTGGAGACTCT
ACCATATGGGTGCGCCTCGTGGAGCCGTACAGCGGAGCACTACACGAAGT
TCAATGGAACCCACCGCCAGTTCCTTACACGGTGCATCGGCTGGAGCAAG
CGAAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGGCCCTCATCCAAGC
AGGCGGCGAGGAAACCATCGAGGCCACCGTGCGCGAACGGAGACTGTGTT
TCGAGGGCTTTGTTGTGCGCATGGACGACAACCGCCTCCCCAAGCGCATG
CTGTTAGGAGCGATGGCGGAGGGCGTGGGATACCGGGGCGGGCAGGAGAG
CGACTGGGTGTCTCGTCTAGGAGAGGACCTCGTGGCCTTCAACATGGGAG
ACGAAAAGGAAGGGGGGAAATGGAAAGAGAGCGCCAAGAACTCGGAGGTG
TGGTACAACAAGGTCGAGGACGGGGCGGCATGGTTCATGAGGAAATGGCA
CAGGCAGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGGAAGCAG
AAGCAGAGAGTACGGCCATCGCAGGGCCGAAGAGAAAGAGGGTCGGGGAA
GCGGCGGTGGGGGGGAAGGAACGGCGACCGGGCACTGCTGTAGAAGCGAG
TAGGGCGGCCGAGGCAGCACTTGTGGCGAACTATGTACCTGGCTGA