EsuBft946_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft946_4a-0001
Unique Name	EsuBft946_4a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_390	contig	Scaffold_390:125575..126988 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
ProteomeId	EsuBft946_4
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Length	141
Hectar predicted targeting category	other localisation
Date last modified	2016-06-14
Date creation	2016-06-14

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft946_4a	EsuBft946_4a	Ectocarpus subulatus male Bft15b	gene	Scaffold_390 125575..126988 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_4a-0001-exon	EsuBft946_4a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_390 125575..126988 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_4a-0001-exon	agat-three_prime_utr-23362	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_390 125575..126193 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_4a-0001-cds	EsuBft946_4a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_390 126194..126988 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft946_4a-0001	EsuBft946_4	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_390 126194..126988 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_390:125575..126988-
coding sequence from alignment at Scaffold_390:125575..126988-

spliced messenger RNA

>EsuBft946_4a-0001 ID=EsuBft946_4a-0001|Name=EsuBft946_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1414bp|location=Sequence derived from alignment at Scaffold_390:125575..126988- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGAGCTCCCTCGAGGCATTCCCTAGGTGCTGGCAGCCCCTCAACTG
GAGCCGCTTCGACGAGGCTCTCCAGGACTTGGTTGTGGGCAAAGACCCCC
TCGAGCTCGGCGCTCGGGCGGCCTATTTGGGCATCGTGCTCGACTCTCTC
GAGACCTTTCGCCGCCAGCGACAGGGAGCCGTGGGCGGAGGAGCCCGGGG
GGGCAGCAGCAGCAGCGGGGTGCCGCCGCTCCTGCTGGGCGCCGGCGGGG
ACAGGGACGGCCGCACCGCCCTAAAGCAGTGCGCCAAGTGGGCGGCCAGG
GTGTGGGCTCACCGCCACGCCGGCGTGGCCGCAGGCGCCGCCGGGGGAAG
AAAATACGACGAGGAGATCGTCAACACCCGCGTGTGCATGACCGCGTCGC
GAGCGCTGGCTGAGGCGCTGGAGGCTTTCCGGATGGCGGCGGGGGAGCTT
GAAGGGTGCCGTCTCGCGGCGGTGATACTGGAGTCCGAATCGGAGTCGAA
CGGGGGCAAGGAGGCCGCTCGGGGCCTGGCGGGGCTGATGCGGTCTCTCT
CCGGGAGGACGTTCTGCTCTGCCCTCGCCCGAGTGCTCCTGGAGAACATG
CCCGAGCAGCAGCAGCAGGGCGGCGGCGGCGTCGTGGAGGTGGAGAAGCT
GAAAGCGTTGCTCCGACGGCAGGCTGCTGTTCCGATAGGGGTGGTGTCGG
CCGGTGGTAGTCGCCGCGGCTGCAGGGCGAAGGTTGTGGGCGGCGGCGCA
GGTAGCGCGATGCTGTTCGCGGACATGGACGCGGAAAGCAACTAGGAATA
TATACGAAGTAGTTTGTGTAGAGAAGGCGTGCCCGCAGGGCGTTCTGATC
GGGCATCGTTTGTGTGTCAACGTGGACCTATTTGTGTGTCTGTAGCCTTT
GCGGTGCCTTGTAATCTTACGTTCTTGTTGGGCAAGGTATTTTTTTCGGA
CCAAGTGGGTATCATCAAAGGAGGTGGTTGCAGGAGAGCGGAAGCCTTAA
TTCTTAACGAGGACGGCAGGCGTGAAAGGGTGTGTTTCGTGCAAGATTGA
TTGAAAAATGAGTCGTGACATCTCGCAGACGCCTCAGACTGGGGTGTGAT
GAAATTGGACTCTCCTTCTTAGCTGTTGCGACTGCGGCTGGACAAGTTGT
GGGTTGGTACGGCAGGGTGCAGAAACGGGCCTGAGAGACAGACAGCTGTG
CTCTCACCTCGCCGCCAATGTTGGAGGAAGTCGTCAGATTTGTTAGAAAG
GTTTGCTCAACAACAGAATTTTGTCAGTGTGTCGTTCTTCTCTCGCTGCT
TCATGATACTGGGAACCGGGCTGTATGAAGTCAGGGGTCCGGGTGACGTG
CAAGTTCGCAACTTGTTTCATTCTGCCTAATTGTTGTTTACAATAGAAGA
GAGCGGGCGTTCGG

protein sequence of EsuBft946_4a-0001

>EsuBft946_4 ID=EsuBft946_4|Name=EsuBft946_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=264bp
MTSSLEAFPRCWQPLNWSRFDEALQDLVVGKDPLELGARAAYLGIVLDSL
ETFRRQRQGAVGGGARGGSSSSGVPPLLLGAGGDRDGRTALKQCAKWAAR
VWAHRHAGVAAGAAGGRKYDEEIVNTRVCMTASRALAEALEAFRMAAGEL
EGCRLAAVILESESESNGGKEAARGLAGLMRSLSGRTFCSALARVLLENM
PEQQQQGGGGVVEVEKLKALLRRQAAVPIGVVSAGGSRRGCRAKVVGGGA
GSAMLFADMDAESN

mRNA from alignment at Scaffold_390:125575..126988-

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft946_4a-0001 ID=EsuBft946_4a-0001|Name=EsuBft946_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1414bp|location=Sequence derived from alignment at Scaffold_390:125575..126988- (Ectocarpus subulatus male Bft15b)
ATGACGAGCTCCCTCGAGGCATTCCCTAGGTGCTGGCAGCCCCTCAACTG
GAGCCGCTTCGACGAGGCTCTCCAGGACTTGGTTGTGGGCAAAGACCCCC
TCGAGCTCGGCGCTCGGGCGGCCTATTTGGGCATCGTGCTCGACTCTCTC
GAGACCTTTCGCCGCCAGCGACAGGGAGCCGTGGGCGGAGGAGCCCGGGG
GGGCAGCAGCAGCAGCGGGGTGCCGCCGCTCCTGCTGGGCGCCGGCGGGG
ACAGGGACGGCCGCACCGCCCTAAAGCAGTGCGCCAAGTGGGCGGCCAGG
GTGTGGGCTCACCGCCACGCCGGCGTGGCCGCAGGCGCCGCCGGGGGAAG
AAAATACGACGAGGAGATCGTCAACACCCGCGTGTGCATGACCGCGTCGC
GAGCGCTGGCTGAGGCGCTGGAGGCTTTCCGGATGGCGGCGGGGGAGCTT
GAAGGGTGCCGTCTCGCGGCGGTGATACTGGAGTCCGAATCGGAGTCGAA
CGGGGGCAAGGAGGCCGCTCGGGGCCTGGCGGGGCTGATGCGGTCTCTCT
CCGGGAGGACGTTCTGCTCTGCCCTCGCCCGAGTGCTCCTGGAGAACATG
CCCGAGCAGCAGCAGCAGGGCGGCGGCGGCGTCGTGGAGGTGGAGAAGCT
GAAAGCGTTGCTCCGACGGCAGGCTGCTGTTCCGATAGGGGTGGTGTCGG
CCGGTGGTAGTCGCCGCGGCTGCAGGGCGAAGGTTGTGGGCGGCGGCGCA
GGTAGCGCGATGCTGTTCGCGGACATGGACGCGGAAAGCAACTAGGAATA
TATACGAAGTAGTTTGTGTAGAGAAGGCGTGCCCGCAGGGCGTTCTGATC
GGGCATCGTTTGTGTGTCAACGTGGACCTATTTGTGTGTCTGTAGCCTTT
GCGGTGCCTTGTAATCTTACGTTCTTGTTGGGCAAGGTATTTTTTTCGGA
CCAAGTGGGTATCATCAAAGGAGGTGGTTGCAGGAGAGCGGAAGCCTTAA
TTCTTAACGAGGACGGCAGGCGTGAAAGGGTGTGTTTCGTGCAAGATTGA
TTGAAAAATGAGTCGTGACATCTCGCAGACGCCTCAGACTGGGGTGTGAT
GAAATTGGACTCTCCTTCTTAGCTGTTGCGACTGCGGCTGGACAAGTTGT
GGGTTGGTACGGCAGGGTGCAGAAACGGGCCTGAGAGACAGACAGCTGTG
CTCTCACCTCGCCGCCAATGTTGGAGGAAGTCGTCAGATTTGTTAGAAAG
GTTTGCTCAACAACAGAATTTTGTCAGTGTGTCGTTCTTCTCTCGCTGCT
TCATGATACTGGGAACCGGGCTGTATGAAGTCAGGGGTCCGGGTGACGTG
CAAGTTCGCAACTTGTTTCATTCTGCCTAATTGTTGTTTACAATAGAAGA
GAGCGGGCGTTCGG

Coding sequence (CDS) from alignment at Scaffold_390:125575..126988-

>EsuBft946_4a-0001 ID=EsuBft946_4a-0001|Name=EsuBft946_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=795bp|location=Sequence derived from alignment at Scaffold_390:125575..126988- (Ectocarpus subulatus male Bft15b)
ATGACGAGCTCCCTCGAGGCATTCCCTAGGTGCTGGCAGCCCCTCAACTG
GAGCCGCTTCGACGAGGCTCTCCAGGACTTGGTTGTGGGCAAAGACCCCC
TCGAGCTCGGCGCTCGGGCGGCCTATTTGGGCATCGTGCTCGACTCTCTC
GAGACCTTTCGCCGCCAGCGACAGGGAGCCGTGGGCGGAGGAGCCCGGGG
GGGCAGCAGCAGCAGCGGGGTGCCGCCGCTCCTGCTGGGCGCCGGCGGGG
ACAGGGACGGCCGCACCGCCCTAAAGCAGTGCGCCAAGTGGGCGGCCAGG
GTGTGGGCTCACCGCCACGCCGGCGTGGCCGCAGGCGCCGCCGGGGGAAG
AAAATACGACGAGGAGATCGTCAACACCCGCGTGTGCATGACCGCGTCGC
GAGCGCTGGCTGAGGCGCTGGAGGCTTTCCGGATGGCGGCGGGGGAGCTT
GAAGGGTGCCGTCTCGCGGCGGTGATACTGGAGTCCGAATCGGAGTCGAA
CGGGGGCAAGGAGGCCGCTCGGGGCCTGGCGGGGCTGATGCGGTCTCTCT
CCGGGAGGACGTTCTGCTCTGCCCTCGCCCGAGTGCTCCTGGAGAACATG
CCCGAGCAGCAGCAGCAGGGCGGCGGCGGCGTCGTGGAGGTGGAGAAGCT
GAAAGCGTTGCTCCGACGGCAGGCTGCTGTTCCGATAGGGGTGGTGTCGG
CCGGTGGTAGTCGCCGCGGCTGCAGGGCGAAGGTTGTGGGCGGCGGCGCA
GGTAGCGCGATGCTGTTCGCGGACATGGACGCGGAAAGCAACTAG