EsuBft1580_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft1580_4a-0001
Unique NameEsuBft1580_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_390contigScaffold_390:16936..18300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft1580_4
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length111
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_4aEsuBft1580_4aEctocarpus subulatus male Bft15bgeneScaffold_390 16936..18300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_4a-0001EsuBft1580_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_390 17833..18053 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_4a-0001-exonEsuBft1580_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_390 16936..17652 -
EsuBft1580_4a-0001-exonagat-exon-83610Ectocarpus subulatus male Bft15bexonScaffold_390 17766..17871 -
EsuBft1580_4a-0001-exonagat-exon-83611Ectocarpus subulatus male Bft15bexonScaffold_390 18006..18300 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_4a-0001-exonagat-three_prime_utr-5062Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 16936..17652 -
EsuBft1580_4a-0001-exonagat-three_prime_utr-5063Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_390 17766..17832 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_4a-0001-cdsEsuBft1580_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_390 17833..17871 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft1580_4a-0001-exonagat-five_prime_utr-3278Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_390 18054..18300 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft1580_4a-0001 ID=EsuBft1580_4a-0001|Name=EsuBft1580_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1118bp|location=Sequence derived from alignment at Scaffold_390:16936..18300- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TTCCTCTCGTGCGTTTGTTCTGCATGCACGTTTGTGTGTTGTGTGTGTCG
AAGCGAGAGAACGCCCGCGCGACATGTCATCATCATCATCATCTTCGTCG
TTGTCATCACCATGGTCATCGTTGTCTTCGTTTTCATCGTCTCCGTCTAC
GCGGCGCGCAAGTAGTGTCGCGGATACCGGAGCCGGATCCGAGCGAAGAT
GCAGCAGGCGGCATCATCGTAAAACACACGCTACTGCTGCTGGTGCTATG
GAGCGAGAAGAAGCCGTGATCCCAAGCGCATGTAGGCATACACCGACGTC
TGTCCCTCTGGCCCCCATCCTCGACTTTTACTAGCTAGACGACCCAACCG
AGGTCACATAGGAGGGAGGGCTTGGACCCCCTCCTGCGGTTCCTGCCTGA
GGATTTACTTACTATGCCGGAACTCGAACCCATGAGCTCGCCATTAGTAG
GCTGCGAGGGCACCCACTAGACCACCGGGGCGACTCGTGTATGTGTGCAT
AGAGTAGCTTCCTCTCCATATCGACTTCTACTACAGCACACATGCAAGTA
CACCTGTACACCTCCCCCCCCTCGGCCTGCTCCCCGGCCGGGGCCGAAAT
CGACCTAGTGAGTTCCGCTCGGGCGAACCAGGCCACAACAGATAGTAGGC
GGGTGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCGG
TGAGGATGCACAGACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTT
CCCGCGGCAGTAATGCAAAGCGGCAAACTGCACCTGGCAACCACCGTCGC
GGAAAGCGTGGCCCACGAAGCTGGAGGAGTAGAGAGATTCGTAAATACCA
CGTCAGTAAGCACCGCTCGCGGGAGAAGGGAAACAACCGCGGGCTCCGCG
GGGAGGGAGTGCTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACCGA
GCTCTGCAGAGATGGATTGATGCGAGGAAACTCGCCGCTCGGAAAATACG
GAAGAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCG
CAGCGGCCGTCAAGGCGGCTGCGAAGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft1580_4a-0001

>EsuBft1580_4 ID=EsuBft1580_4|Name=EsuBft1580_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=28bp
MEREEAVIPSACRHTPTSVPLAPILDFY
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mRNA from alignment at Scaffold_390:16936..18300-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft1580_4a-0001 ID=EsuBft1580_4a-0001|Name=EsuBft1580_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1365bp|location=Sequence derived from alignment at Scaffold_390:16936..18300- (Ectocarpus subulatus male Bft15b)
TTCCTCTCGTGCGTTTGTTCTGCATGCACGTTTGTGTGTTGTGTGTGTCG
AAGCGAGAGAACGCCCGCGCGACATGTCATCATCATCATCATCTTCGTCG
TTGTCATCACCATGGTCATCGTTGTCTTCGTTTTCATCGTCTCCGTCTAC
GCGGCGCGCAAGTAGTGTCGCGGATACCGGAGCCGGATCCGAGCGAAGAT
GCAGCAGGCGGCATCATCGTAAAACACACGCTACTGCTGCTGGTGCTATG
GAGCGAGAAGAAGCCGTGATCCCAAGCGCATGTAGGCATACACCGGTGAG
TAGCGCGAGAGTGTTTCTTCTGCGACCTATCGCCTACTGCTGTAGTTTTT
GGAATGATGCGCATACATCCTATATCTAGACTAATATACACTACTCTTTA
TTTTTTTTTCCTCCTGTCATTGGCAACAGACGTCTGTCCCTCTGGCCCCC
ATCCTCGACTTTTACTAGCTAGACGACCCAACCGAGGTCACATAGGAGGG
AGGGCTTGGACCCCCTCCTGCGGTTCCTGCCTGAGGTATGTTTATCGCGA
GAATGGTACAGCAATCCCTTCCCTCGCGGCTTGCGAAGTCGGCCAAGTTT
ACCAACAACGAGCTTTCTTTGCAGAGCGTCGCTTCCGACCTAGCACAGGA
TTTACTTACTATGCCGGAACTCGAACCCATGAGCTCGCCATTAGTAGGCT
GCGAGGGCACCCACTAGACCACCGGGGCGACTCGTGTATGTGTGCATAGA
GTAGCTTCCTCTCCATATCGACTTCTACTACAGCACACATGCAAGTACAC
CTGTACACCTCCCCCCCCTCGGCCTGCTCCCCGGCCGGGGCCGAAATCGA
CCTAGTGAGTTCCGCTCGGGCGAACCAGGCCACAACAGATAGTAGGCGGG
TGGTGTCCCAAGGTGCAACTCACCGCCGCGCTGGCTCAGCGTGGCGGTGA
GGATGCACAGACGGTGGTAGTGGCGAGAGGTGTGTATGGACACTGTTCCC
GCGGCAGTAATGCAAAGCGGCAAACTGCACCTGGCAACCACCGTCGCGGA
AAGCGTGGCCCACGAAGCTGGAGGAGTAGAGAGATTCGTAAATACCACGT
CAGTAAGCACCGCTCGCGGGAGAAGGGAAACAACCGCGGGCTCCGCGGGG
AGGGAGTGCTGCACCCTCCTCGTCAAAACACCACAGGCAAGAACCGAGCT
CTGCAGAGATGGATTGATGCGAGGAAACTCGCCGCTCGGAAAATACGGAA
GAAAGCACACCCGCAACGCGAGGTGGACCGAGAGAGACACGAGACCGCAG
CGGCCGTCAAGGCGGCTGCGAAGANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_390:16936..18300-

>EsuBft1580_4a-0001 ID=EsuBft1580_4a-0001|Name=EsuBft1580_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=87bp|location=Sequence derived from alignment at Scaffold_390:16936..18300- (Ectocarpus subulatus male Bft15b)
ATGGAGCGAGAAGAAGCCGTGATCCCAAGCGCATGTAGGCATACACCGAC
GTCTGTCCCTCTGGCCCCCATCCTCGACTTTTACTAG
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