EsuBft841_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft841_2a-0001
Unique NameEsuBft841_2a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_389contigScaffold_389:298962..302440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft841_2
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length304
Hectar predicted targeting categoryno signal peptide or anchor
Date last modified2016-06-15
Date creation2016-06-15
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft841_2aEsuBft841_2aEctocarpus subulatus male Bft15bgeneScaffold_389 298962..302440 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_2a-0001-exonagat-exon-9339Ectocarpus subulatus male Bft15bexonScaffold_389 298962..301966 -
EsuBft841_2a-0001-exonEsuBft841_2a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_389 302403..302440 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_2a-0001-exonagat-three_prime_utr-22171Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_389 298962..301917 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_2a-0001-cdsEsuBft841_2a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_389 301918..301966 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft841_2a-0001EsuBft841_2Ectocarpus subulatus male Bft15bpolypeptideScaffold_389 301918..302440 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft841_2a-0001 ID=EsuBft841_2a-0001|Name=EsuBft841_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3043bp|location=Sequence derived from alignment at Scaffold_389:298962..302440- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGGAGGAAAACGAGCTAG
CTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGAAAAGCTTTCAGGC
GAACTAAGGCCCTCTCGTCGTCAAAATTCCTCCGGCAAAAAGCTTCGTGC
GCCAAATGGTTGGCGATAGCAACGATGAGTCGATTGGTGCCTTTGCCAAG
ACCACCATTCGTTGAAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGGT
TGAAAGTTCCCGCATAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAGG
GCTGATCCTGGCTTAAGGATCGACTTGTCGATGCTTCGACCTGCTGATGG
GTTGACGATTGTTACGTCGATCAGAATGGACTTGGTGCAGAGGTCCTCTT
CCTTCTCTCCTGCGTGTAATCCTGGGGGGATTACCAAATCCATCTTGTAT
AGCCCCTTTCCCCTACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAAC
GGCGATGGGCATATGGCACTCGCGCAGTGTCTTGAGGACCACTCGAACCA
TCCTGTTATGGAGGAAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGAG
TGGGCTCGGCTCAAGCGGTCCTTGCATGGTAACAATGCACCTGCACCACA
AAGTTTGCCTGTGTTGCAGTCTGCTCGATCGTGACTCCCCAGTACACGAC
CGATTGACTCTCGATATAGATCAGGCAGCATTCTTTCATCTGCTGACAAC
CCTTGCGTTGTCAACCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCAA
GCGGATCAACGCCCTCTTCTTTGGCGTTTCCTCGCCTACTACTTTCTGCA
AGTCTGTCTCCACCATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAGG
AGAGCTTGGGCTCCAAAGACTTGGTAGTGTTGACCAAATTCATTTCGGCT
GAAGGTAGACGGTGGTTGATGTTCTACGTCAGGGTTTCCATCTTCACTGG
GTTTTCCCGCCTTCCCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGGG
GTTAACTCATCACTTGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTTT
TTCAAGCTTGTCTTTGGTGATGATTTCCTCTAGCTTCTTCAGCGAGTCAA
TCAGAGCCAATCCTGTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTCG
ACTGTGTATCCTGTCGATGCTTGCACTGACTTGGAGAACACCAGCGCTTG
CCCTGCCACAAAAGCCGATTCTCGAATGAGAACATTGCTCGTGATTCCTA
GTCCTCCTTCACGCATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTTG
AAGAAATCTACCTCCTCGCTCTTCGTCGGGTCTGCGCGTACTTCTTTGAC
CGTTGGTATTCTCATGCTGTCGGCCATCTTGCCAAGGACGATCTTACTCA
TTGCCCACATCATCATGTTGTCATGTAATTTTGCGGCAGAGTTGGTGATA
GACGGTGCAATCGTCCTCAGCAGATGGAACAAACGTGGCACACCAGATAA
ACGCAGCAGTTGATAGCTGGCTTGAGGGTCGTCAAGCGTTGCTAGGCGGA
GTATCAATTCCGCCGGGTCACCACGGGCGATTTTGGAAACGAAATTCCTC
TGGAACTCCTCTGTTCCTACTGGGATCCCGACAACTGGCATGCCACCTTC
AGCAACTGACAGACCAATTTTCGTCAATTGTTGCTGTTCGTCGTTTGTCA
AAGAGGACATGCAAAGACCTTCCGGGAAAAGCACTTTGGATTTCGGGAGA
CTGAGCTCAATGCCTTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTAC
AGTGGATATGGCCTGCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCTT
GGAGGTCGTCGACGTATCCGATGAGTTTCACTCCTGGCACTGGTGGCTTG
TTGTTGAACTCTTTCATGATATCAAGAAGTCCTACACAGAAGCCAAACCC
TCCCAAATTGCAGCCTTGTTGAACTCCGCGCTGTGAAAGAACAACCTCGA
TCGAACCATCTTCCATTTTGAACAGAAGTTTCGCCTTGGTTCGAGCGTAG
ATGTTCCCGACGAACTTCAGCAAGTGTGGCGTATGGTGGCCACTGCTGGC
AAGATGGAAGATCTGCGCATGCTGTTGTAAGCATTTTTCCCATCAAAGGA
GAGAATGGTGCTGCCTTGCTGGTGGCTGAGGGTTGCTATGGAAGCCACTA
TCTCAACTCCTTCTGGAACAACACCTCCGGACTGATTTGCTGCTTCGAAG
ATGTTCGCAATTCCTCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGAT
GCGACGCAAAACCCCTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCG
CTGAAAGGTTGGCACTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCG
TCTCCGTAGTAGAAGACTTTAAAGCTGAAGTCCGCCAAGGTTTCAGTGAA
AGAATCACTCATCCCACCAGCTTGGAGATACGAAAAACGAAGACCATCAG
GCCCCGGAGCACTCTGAGGGTTGACTTTCTTCACCGTCTGCTTGATGAAC
TTGATTTCGAATGGTTCATCAGCATCGGCGACGGAGTCTATCTTGTGCGT
TTTTATACCATATGAGTGTGTGTTGTTTTCGTCCTATTTATTATGGCGAC
AGTCCCCTCATTTTTCGTGGTGAGACGTGTACTACACCTTCAGCGTATGT
ATGTAGACTAGAGTACTAGTCTACACTTTTCAGTGGTTTTTTCGTACAAC
TACAACCATCCAGGGTCACACAGGAGGGGGTAAACACAAGGACTTTTCTT
CCTTTTATTTCTTTTCATGCCCCACCTTCCTCCTGCGGTGCGTGCTGATT
TTTTTTTTTTCGCGAGAAGGGTCCAGCCGTCCCTTTCTCTCGTCAACGGT
GCTAACGTCGAAGTCTGGTACTCACGAGAGCTTGTCAGCTGTATTTCGCT
TTCACCCGCACATTTCGTAAAATTTTCACCCGATGGGGGTTCG
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protein sequence of EsuBft841_2a-0001

>EsuBft841_2 ID=EsuBft841_2|Name=EsuBft841_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=28bp
MNWDPVRGQHGGGKRASSKVNRLRILLV
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mRNA from alignment at Scaffold_389:298962..302440-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft841_2a-0001 ID=EsuBft841_2a-0001|Name=EsuBft841_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3479bp|location=Sequence derived from alignment at Scaffold_389:298962..302440- (Ectocarpus subulatus male Bft15b)
ATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGGAGGGTAAACTATCCT
TCGGATCGAAAACAGAAACAGCAGCAACAGAAGAAAACTGCACCCGTCTA
CCAAGGCTATTTCCTAGCACTCGAGTTCGTTTAGGATTACTTTCACCAGT
GTCCTCCTTGTTTTCGCTACCATCATTCTCATCCTCATTTCGACAAGAAG
AATCTATGGGCAGTTCTTCCCTAGCCCTACGTTTCTTGTTGTGGGGAAGG
TCATCTGGCTCAAACCCTTTGCTCTCTTCCACTCCTCCATGTTTTTCTGC
TCCATCGTCTTCATCCTCCTTTCTCCCCTTTCCCTTTCCTTCGTCTTCGT
CACTCCCAAAAGAATTACCCTCACTACTATCGTTGTCGCAGAGATCCCAA
CCGATTGGCCCTGGTGGAAGTTGGTCGATCAGTAGCCCATGACGTTTGAA
CACATCGCGAGTTCGCATCGACAGAAAACGAGCTAGCTCGAAGGTAAACC
GTCTCCGAATCCTGTTAGTATGAAAAGCTTTCAGGCGAACTAAGGCCCTC
TCGTCGTCAAAATTCCTCCGGCAAAAAGCTTCGTGCGCCAAATGGTTGGC
GATAGCAACGATGAGTCGATTGGTGCCTTTGCCAAGACCACCATTCGTTG
AAAAAGCAGCAGTAAGGAGGGTAGATCTAGACGGGTTGAAAGTTCCCGCA
TAGTGATTTGCCTTACTTGCAGCTCGATCTTCGAGGGCTGATCCTGGCTT
AAGGATCGACTTGTCGATGCTTCGACCTGCTGATGGGTTGACGATTGTTA
CGTCGATCAGAATGGACTTGGTGCAGAGGTCCTCTTCCTTCTCTCCTGCG
TGTAATCCTGGGGGGATTACCAAATCCATCTTGTATAGCCCCTTTCCCCT
ACCAGTGCCTGTGGTAAAAGGGGAAGAATCCTCAACGGCGATGGGCATAT
GGCACTCGCGCAGTGTCTTGAGGACCACTCGAACCATCCTGTTATGGAGG
AAGGTTGAGGCGCCGGTCTTGGTGCAGACGAGGGAGTGGGCTCGGCTCAA
GCGGTCCTTGCATGGTAACAATGCACCTGCACCACAAAGTTTGCCTGTGT
TGCAGTCTGCTCGATCGTGACTCCCCAGTACACGACCGATTGACTCTCGA
TATAGATCAGGCAGCATTCTTTCATCTGCTGACAACCCTTGCGTTGTCAA
CCACGACAAAACTCCCTTGCCTTTCGCTTCCTCCAAGCGGATCAACGCCC
TCTTCTTTGGCGTTTCCTCGCCTACTACTTTCTGCAAGTCTGTCTCCACC
ATGTGGCGCACTGCTGCATGAAGAGGTTTCGAAAGGAGAGCTTGGGCTCC
AAAGACTTGGTAGTGTTGACCAAATTCATTTCGGCTGAAGGTAGACGGTG
GTTGATGTTCTACGTCAGGGTTTCCATCTTCACTGGGTTTTCCCGCCTTC
CCTGCTTCCAACAAGTAAACTCCTTTGAGGGCGGGGGTTAACTCATCACT
TGTGGCAAGTTTAGCCCATGACTGCCCAACAGCTTTTTCAAGCTTGTCTT
TGGTGATGATTTCCTCTAGCTTCTTCAGCGAGTCAATCAGAGCCAATCCT
GTCGGTAGCTGGGCAAGCCGGGGTAGACATTGCTCGACTGTGTATCCTGT
CGATGCTTGCACTGACTTGGAGAACACCAGCGCTTGCCCTGCCACAAAAG
CCGATTCTCGAATGAGAACATTGCTCGTGATTCCTAGTCCTCCTTCACGC
ATGGGTAGGTGCACCTGCGCCCGAGCTGTCCCTTTGAAGAAATCTACCTC
CTCGCTCTTCGTCGGGTCTGCGCGTACTTCTTTGACCGTTGGTATTCTCA
TGCTGTCGGCCATCTTGCCAAGGACGATCTTACTCATTGCCCACATCATC
ATGTTGTCATGTAATTTTGCGGCAGAGTTGGTGATAGACGGTGCAATCGT
CCTCAGCAGATGGAACAAACGTGGCACACCAGATAAACGCAGCAGTTGAT
AGCTGGCTTGAGGGTCGTCAAGCGTTGCTAGGCGGAGTATCAATTCCGCC
GGGTCACCACGGGCGATTTTGGAAACGAAATTCCTCTGGAACTCCTCTGT
TCCTACTGGGATCCCGACAACTGGCATGCCACCTTCAGCAACTGACAGAC
CAATTTTCGTCAATTGTTGCTGTTCGTCGTTTGTCAAAGAGGACATGCAA
AGACCTTCCGGGAAAAGCACTTTGGATTTCGGGAGACTGAGCTCAATGCC
TTTTTGGGAGAGACGTTCCTGAATCCAATTCGTTACAGTGGATATGGCCT
GCATGTTCCTAGCCAAACCTGGTGGAAGATGTGCTTGGAGGTCGTCGACG
TATCCGATGAGTTTCACTCCTGGCACTGGTGGCTTGTTGTTGAACTCTTT
CATGATATCAAGAAGTCCTACACAGAAGCCAAACCCTCCCAAATTGCAGC
CTTGTTGAACTCCGCGCTGTGAAAGAACAACCTCGATCGAACCATCTTCC
ATTTTGAACAGAAGTTTCGCCTTGGTTCGAGCGTAGATGTTCCCGACGAA
CTTCAGCAAGTGTGGCGTATGGTGGCCACTGCTGGCAAGATGGAAGATCT
GCGCATGCTGTTGTAAGCATTTTTCCCATCAAAGGAGAGAATGGTGCTGC
CTTGCTGGTGGCTGAGGGTTGCTATGGAAGCCACTATCTCAACTCCTTCT
GGAACAACACCTCCGGACTGATTTGCTGCTTCGAAGATGTTCGCAATTCC
TCCCTTGTACTGGCGGCAGAAGCTGCCGCTGATGATGCGACGCAAAACCC
CTCCAACTGCAATCGGCCGTTTTTTCTCTCCCAGCGCTGAAAGGTTGGCA
CTGGTGTGGAGGTTCCAAAAGAAATCCGGAAGCTCGTCTCCGTAGTAGAA
GACTTTAAAGCTGAAGTCCGCCAAGGTTTCAGTGAAAGAATCACTCATCC
CACCAGCTTGGAGATACGAAAAACGAAGACCATCAGGCCCCGGAGCACTC
TGAGGGTTGACTTTCTTCACCGTCTGCTTGATGAACTTGATTTCGAATGG
TTCATCAGCATCGGCGACGGAGTCTATCTTGTGCGTTTTTATACCATATG
AGTGTGTGTTGTTTTCGTCCTATTTATTATGGCGACAGTCCCCTCATTTT
TCGTGGTGAGACGTGTACTACACCTTCAGCGTATGTATGTAGACTAGAGT
ACTAGTCTACACTTTTCAGTGGTTTTTTCGTACAACTACAACCATCCAGG
GTCACACAGGAGGGGGTAAACACAAGGACTTTTCTTCCTTTTATTTCTTT
TCATGCCCCACCTTCCTCCTGCGGTGCGTGCTGATTTTTTTTTTTTCGCG
AGAAGGGTCCAGCCGTCCCTTTCTCTCGTCAACGGTGCTAACGTCGAAGT
CTGGTACTCACGAGAGCTTGTCAGCTGTATTTCGCTTTCACCCGCACATT
TCGTAAAATTTTCACCCGATGGGGGTTCG
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Coding sequence (CDS) from alignment at Scaffold_389:298962..302440-

>EsuBft841_2a-0001 ID=EsuBft841_2a-0001|Name=EsuBft841_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=87bp|location=Sequence derived from alignment at Scaffold_389:298962..302440- (Ectocarpus subulatus male Bft15b)
ATGAACTGGGACCCCGTGAGGGGGCAGCATGGGGGAGGAAAACGAGCTAG
CTCGAAGGTAAACCGTCTCCGAATCCTGTTAGTATGA
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