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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXC2 |
| ProteomeId | EsuBft937_8 |
| Protein domains | IPR001680 |
| Protein domains | IPR015943 |
| Protein domains | IPR017986 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | peptidylprolyl isomerase domain and wd repeat-containing protein 1 os:mus musculus gn:ppwd1 pe: [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 600 |
| Evalue | 9.09e-84 |
| EggNOG OGs | KOG0882@1|root,KOG0882@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Preferred name | PPWD1 |
| KEGG ko | ko:K12736,ko:K14569 |
| KEGG Pathway | ko03008,map03008 |
| GOs | GO:0000003,GO:0000228,GO:0000375,GO:0000377,GO:0000398,GO:0000413,GO:0000785,GO:0000790,GO:0003002,GO:0003006,GO:0003674,GO:0003682,GO:0003755,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005694,GO:0006139,GO:0006325,GO:0006342,GO:0006355,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007389,GO:0008144,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009791,GO:0009888,GO:0009889,GO:0009890,GO:0009892,GO:0009908,GO:0009909,GO:0009933,GO:0009965,GO:0009987,GO:0010015,GO:0010016,GO:0010051,GO:0010073,GO:0010075,GO:0010082,GO:0010305,GO:0010338,GO:0010358,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016018,GO:0016043,GO:0016070,GO:0016071,GO:0016458,GO:0016604,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019219,GO:0019222,GO:0019538,GO:0022414,GO:0022622,GO:0031056,GO:0031060,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031399,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033218,GO:0034641,GO:0036211,GO:0040008,GO:0040029,GO:0042277,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048364,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048440,GO:0048442,GO:0048443,GO:0048444,GO:0048447,GO:0048449,GO:0048453,GO:0048464,GO:0048466,GO:0048467,GO:0048507,GO:0048509,GO:0048519,GO:0048523,GO:0048532,GO:0048580,GO:0048608,GO:0048638,GO:0048646,GO:0048731,GO:0048827,GO:0048831,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051171,GO:0051172,GO:0051239,GO:0051246,GO:0051252,GO:0051253,GO:0051276,GO:0060255,GO:0061458,GO:0065007,GO:0070013,GO:0071013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:0140096,GO:1901360,GO:1901564,GO:1902275,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1905392,GO:1905393,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000241,GO:2000280,GO:2001141 |
| EC | 5.2.1.8 |
| Description | peptidyl-prolyl cis-trans isomerase activity |
| COG category | O |
| BRITE | ko00000,ko00001,ko01000,ko03009,ko03041,ko03110 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0019219 |
| GO | 0010305 |
| GO | 0042393 |
| GO | 0003682 |
| GO | 0048453 |
| GO | 0009416 |
| GO | 0009933 |
| GO | 0006281 |
| GO | 0031060 |
| GO | 0010082 |
| GO | 0016567 |
| GO | 0008380 |
| GO | 0010358 |
| GO | 0010338 |
| GO | 0033036 |
| GO | 0048522 |
| GO | 0071013 |
| GO | 0009909 |
| GO | 0048443 |
| GO | 0048440 |
| GO | 0005515 |
| GO | 0000003 |
| GO | 0007049 |
| GO | 0006310 |
| GO | 0048468 |
| GO | 0006397 |
| GO | 0043234 |
| GO | 0065008 |
| GO | 0016853 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=600bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTGAAAAAATCCCGGG
CTGCTGAGAAGGCATTTCTAAAGGTGTACCTCGAAGCCCTGCCAGCGGCG
CCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTAAGCCACGTCCT
CATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAGCCTGGACGGGC
ACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGTTCGTCAAGCAC
TACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTATCGAGGGACGG
TCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCATAAAGTTCTACGACG
TTGTTTCGTTCGACATGAGCCACATGATCGCCCTCGGCTACACGCCCNNN back to topprotein sequence of EsuBft937_8a-0001 >EsuBft937_8 ID=EsuBft937_8|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=200bp
MAKPGEDETSSAKRKKAQQEPEESESSSEDEAGPQPAAPGQLGEDSDTDG
EAGPPAPAPVKQKKKRKLAHEKVDEGGGVKKSRAAEKAFLKVYLEALPAA
PMYERSYMHRDVVSHVLMTPCGTDFLVTASLDGHIKFWKKMPEGVEFVKH
YHSHLEPIHDLAVSRDGQRLCTTSADKSIKFYDVVSFDMSHMIALGYTPX back to topmRNA from alignment at Scaffold_376:131169..134433- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3265bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTACTCGTGTAGACGC
GTGCCGTAGTCGTTAGACTGTTGACTTCGAATAGGATGGGTCGGTGAGGG
GGGGGCGGGGGGGGGGGGTCCTCCTAGTCGTGCATGCCGTAGTCGTTAGA
CCATTGACCTCGCATCCCTACAAGCCGGGACGGAGCACGCCGGGTTCTCA
CCGGACCAGGCTCTCACATCACCAAGCGCGAAGCGCCGTGAGATATTCGG
CGGGTCGCATGAAGGGTGCGCTGCATGCTGCTAAGGGTGTTCGGCGTCTT
GTGCTTACTTTCTTGCGTACGGATGACAGCTGCGTATGACTTTATTTATT
TTCTGGTGCTTTCACTTCCAGAGACAGTTGTAAGCACTGCGTAACTGCCT
CGAGGGTGCTTGACCAATTTAACACAACGTGGTGCGATCATCCCCCTTGC
GCGGAGTGAGGGTTCTCCACCCCGCACAACATGATCCACTCGACCACCAG
TATGGTTACCGCCAAAAGAAAAACAGGTGAAAAAATCCCGGTAACATGGT
TGCCGAGTTCACGAAGTGAATTGGCTTCTTTAACAACGTCGTTGCCAAGC
GACGAACACCCAATCCCAATGGCAAACGCCGATGGGGGGTCATGGGGGAG
GGGGGTCTTTCGCATCCACCGCGCTAACCGGCTGACGGGTGAAGAGACCT
CAGTCTCCGGGCGGCTAAAAAACCGTGTTTGAAGATGGGAGTATGGGGGG
GAGTACTCATGTTTTTCGTGCCTTAGCTGTTAGACCGTTGACCACGCGTC
CTCCAGAGGACTGAGCATTGTTCCCATTGAACGGATCGTACCTATCCTAT
CTTGGTCAAAGGGGGGGCATTGACATCGACCGCGCCAACCGGCTAGCCAG
TGATTAGACACTAGTCTCAGGGCTGCTGAGAAGGCATTTCTAAAGGTAAT
GTGTGTGTGTTAGTTTCAGTAGGATCGGTCAACCGAAGCGGTTGTCCAAT
CAAATTATTTCAGTCTCAAAAGGTGTGTGTAGTTATGCGTTCCTTTCAAC
ATGACTGTTCGCTTACAGGGTTACGCCAACCATGTGCCTGCCTCGCCATG
TGCCGTAGGGTCCCATTTGGACGGCAAACCCCACCTTGTCTGAACCTTTC
ACGCGATGGCTCTCCCAAAATGTGACGTCGAAGCAGGTGTACATGCCTCC
CCATCTGCCGTAGAATACCATCTGCCGTAGGATACCATCTGCCATAGAAA
ACCGTCTGCCGTAGGATACCATCTGCCGTAGGACACCATCTGCGGTAGGA
CACCATCTGCCGTAGGACACCATCTGCCGTAGGATACCACCTGCCGTATA
ATAGCATCTGCCGTAGAATAACATCTGCCGTAGAACACCATCACCGAGTT
GGACGGAGAACCCCACCTCGTTCGTACCTACCTATGCGATTGCTCTCCCA
CACCGAACATGCATAGACCGAAGCGCCCACCCTGCTTGTACCTACCGATG
CGATTTGCTCTCCTACATTGTGACGTCCAAGCAGGTGTACCTCGAAGCCC
TGCCAGCGGCGCCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTA
AGCCACGTCCTCATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAG
CCTGGACGGGCACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGT
TCGTCAAGCACTACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTG
AAGAAGCAGCGTCGTTTTTCCTTTCTTTTTTTTGTCACTTATGGGATCCT
ACAAGCTCATCACGAAAACAATACAAGCCCCTCACCTTTCTCTGTAGAAT
CTGCCAGGGAGAGCTATCTCCGTAGATATTGCCAGGAGCTTCTCCGTAGG
TTTGCTTGGAGCCAGGAGCTGCCGGGGGGGGGGAGTGTACTCATAGTCGT
GCATGCCGCAGTCGTGAGACCATTGACCTCGCATCCCTACACAGCCGGGA
CGGAGCACGCCGGGTTCTCACCGGACCAGGCTCTCACATCACCAAGCGCG
AAGAGCCGTGAGATATTCGGCGAGTCGCATGAAGGNTCCCCCTTGCGCGG
AGTGAGGGTTCTCCACCCCGCGCAACATGATCTACTGGACCACCATTATG
GTTACCGCCAAAAAAAAAAATGGAGGTGAAAAAAAACGGTAACCTGGTTG
CCGAGTTCACGAAGTGAAATGGCTTCTTTAACAACGTCGTTGCCAAGCGA
CGAAAACCCAACCCCGATGGCAAACACCGGGAGGAGCCTTGGGGGGGGGG
TAGGGGTAACCACCACCCCCCTCCCCTCGCTCCCCAAGCGGCCGGTGCAT
GAAACATTCCATGTGAAGTTGGCGCCAGAAGAGATGGAACCAAAAAAACA
CACCAAGCACACCACCCCCGTTGGTTTTCAGAAACACAACGAATTACCGT
ATATGACACAAGATAACACCCCCCCCTGGACCGATTTTCAAAGGTCGATC
ACGCCATGACGAAGGGGATGCACAAATGAAAACAATACATTTTCGGAAAG
CTCTCGACGAGATAGCTTCAACGCCACGGTGTTCGGCGCTGTGACTCTTT
CCTGTTGTTGAGAAATGACATTTGAAAACCGGTCTAGGGGGTGTGTTATC
TTGTGTCATATATAGTAATCTCTTCCGCATATGAGAGTCCGGGGTAGGTT
AGCAGTGAATTCATCGCATGGTATGCATATGATGGCCAACCGGTGTTGGG
TCTTGGCAACCCCAGAGCAGCAACATCTCGTGCCATGTGGGCAACAGGCT
CTACGCCACAATTTGTTTTTATTTTCATATTTCTGTCTTGCAGGTATCGA
GCGAGGGCAATCCCCGAGCAGTATGAAGCAACATCTCATACGATGTGGGC
AACAGGTTCTAGAGACAATGTTCAAGTTTTCTTCCCTTTTTTTTTTTGCA
GGTATCGAGGGACGGTCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCA
TAAAGTTCTACGACGTTGTTTCGTTCGACATGAGCCACATGATCGCCCTC
GGCTACACGCCCNNN back to topCoding sequence (CDS) from alignment at Scaffold_376:131169..134433- >EsuBft937_8a-0001 ID=EsuBft937_8a-0001|Name=EsuBft937_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=600bp|location=Sequence derived from alignment at Scaffold_376:131169..134433- (Ectocarpus subulatus male Bft15b)
ATGGCCAAGCCAGGCGAAGACGAGACCAGCAGCGCGAAGCGAAAGAAAGC
GCAGCAGGAGCCGGAAGAGTCGGAATCCTCTTCCGAGGACGAAGCCGGAC
CTCAGCCTGCGGCGCCTGGGCAGCTAGGGGAGGACTCGGACACGGACGGG
GAGGCAGGGCCGCCGGCACCGGCCCCCGTGAAGCAGAAGAAGAAGCGGAA
GCTGGCCCACGAAAAGGTGGACGAGGGGGGGGGGGTGAAAAAATCCCGGG
CTGCTGAGAAGGCATTTCTAAAGGTGTACCTCGAAGCCCTGCCAGCGGCG
CCGATGTACGAACGTAGCTACATGCACCGGGACGTGGTAAGCCACGTCCT
CATGACCCCCTGCGGCACCGACTTTCTGGTCACGGCTAGCCTGGACGGGC
ACATCAAGTTCTGGAAGAAGATGCCGGAAGGGGTGGAGTTCGTCAAGCAC
TACCACTCGCACCTCGAGCCAATCCACGACCTAGCGGTATCGAGGGACGG
TCAGCGGCTGTGCACCACTTCGGCGGACAAGAGCATAAAGTTCTACGACG
TTGTTTCGTTCGACATGAGCCACATGATCGCCCTCGGCTACACGCCCNNN back to top
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