Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FXB9 |
| ProteomeId | EsuBft937_3 |
| Protein domains | IPR000223 |
| Protein domains | IPR028360 |
| Protein domains | IPR019759 |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SignalP-TM |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR015927 |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | mitochondrial inner membrane protease subunit 2 os:mus musculus gn:immp2l pe:2 sv:1 [Automatic annotation] |
| Nb exon | 4 |
| Max annot lvl | 2759|Eukaryota |
| Length | 1210 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 1.2e-123 |
| EggNOG OGs | COG0681@1|root,KOG1568@2759|Eukaryota |
| Ec32 ortholog description | Imp2 homolog, Inner Membrane Peptidase complex subunit 2 |
| Ec32 ortholog | Ec-04_000030.1 |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K09648 |
| KEGG Pathway | ko03060,map03060 |
| Description | protein processing involved in protein targeting to mitochondrion |
| COG category | U |
| BRITE | ko00000,ko00001,ko01000,ko01002,ko03029 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0008236 |
| GO | 0030728 |
| GO | 0006508 |
| GO | 0007283 |
| GO | 0006627 |
| GO | 0042720 |
| GO | 0001541 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft937_3a-0001 ID=EsuBft937_3a-0001|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1210bp|location=Sequence derived from alignment at Scaffold_376:86604..91901- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CCCCCACGAGCCTCTGCTGCTCTCTTGCCCTCTGTCCGCGAAGACACCAT
GGCCCAGGCCGCAGCGGGTAACGTTCTCCGTGCATCACTGTTTGCCATGC
CGGTGGCGTTGGCGTTCCATGACGTCGTAGGGTCCCCGGTGCAAGTGGAA
GGGAGGTCGATGCAGCCGGCGATCAACCCGCACTTGGGACCAGAGAGCCA
ACAAGGCGGAAGCCTGGACGTGGTGTGGCAAGACAAACTGAGCATCTCGA
GACACATCTACGAGCGAGGCTCCATCGTCGTCTTCAGGAATCCCTTCGAC
CCGAAAGAGCGGGTCGTGAAGCGACTGATCGGCGTCGATGGCGACTGGGT
GCGACCAAGGGGCAACAAGCACAACCTGATGAGAGTGCCGGAGGGATACT
GCTGGGTAGAGGGTGACAATCACGGGGTCAGCGGAGACAGCAACCATTTT
GGACCGATACCGCTGGCGCTCATTGAGGCAAAAGCGACCCACGTTTTGTG
GCCACCAGGAAGAATGCGCAGGCTGGGCCAAGATTTGCCGGTAATCCACC
GCGGTTTGAATCCATCCCAAGCGTGACAGAGCGGGCGCCACTTGTGCTTA
TTCTCTTTGTGTTCCGAAGGGGGGGTCCCAAGGGAAGACGCACAGACGTG
GTAAACAGAGGAGTATATATACGGCTTGGGAGCAGCGATTCACTGGCGGA
GTTTGGATATGACGTGCGGCTTTTTTGCTGAGGGTACAGAAAGAGCCCAT
TCGCTCGTGTTCGCTTCTGGTGGCGCACGGCTCTTGTGCTGCTAAATAAA
GGTACAGGGCTACTTCGCTTTAGCCGATCGATGTATTGGGCTATGGCCGC
CCTTGATTGTTTTGTTAAAACATCCAACTCGAGGTGTTCATGGATGAGAC
GAAGAAAACGTGTTGTCGTTGTTGTCGTGCTCATTTGCTACTTCTTCGTT
CTTGATAGCTGAGAGCGCGAGCCATAACGTCAAAGGGTAGCTCTAAGGAT
AAGGGTTCGGCCCTTTTGCTGAACCGCTGCAAGTTTGTGATTTGACCGAT
GGATTATTTTCCGTGAGCGGTATGCCCGTATGTTCCTGCAACTGGCCAGA
GTTGTCTGAATCATCCCCCCCCCACAGTGTTTGCCATCGGGGTTGGGTTT
TCGTCGCTTGGCAACGACGTTGACGTTGTAAAACAAGCCAATTCACTTCG
TGAACTCGGC back to topprotein sequence of EsuBft937_3a-0001 >EsuBft937_3 ID=EsuBft937_3|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=175bp
MAQAAAGNVLRASLFAMPVALAFHDVVGSPVQVEGRSMQPAINPHLGPES
QQGGSLDVVWQDKLSISRHIYERGSIVVFRNPFDPKERVVKRLIGVDGDW
VRPRGNKHNLMRVPEGYCWVEGDNHGVSGDSNHFGPIPLALIEAKATHVL
WPPGRMRRLGQDLPVIHRGLNPSQA back to topmRNA from alignment at Scaffold_376:86604..91901- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft937_3a-0001 ID=EsuBft937_3a-0001|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5298bp|location=Sequence derived from alignment at Scaffold_376:86604..91901- (Ectocarpus subulatus male Bft15b)
CCCCCACGAGCCTCTGCTGCTCTCTTGCCCTCTGTCCGCGAAGACACCAT
GGCCCAGGCCGCAGCGGGTAACGTTCTCCGTGCATCACTGTTTGCCATGC
CGGTGGCGTTGGCGTTCCATGACGTCGTAGGGTCCCCGGTGCAAGTGGAA
GGGAGGTCGATGCAGCCGGCGATCAACCCGCACTTGGGACCAGAGTAAGC
AGCAGCCAATGTGTGACTGACCGCGCTGGCCATGTCGTTTGGCATCTTCC
AGCTCCTTTCCTCCATCCAGTTGAGGGAGGAGCAGACACCTGAGGAGTTT
CTGTAGGCCCAAGGCGGATTTTGAGTGCACCGGACGCTTTGGGTGGTTGG
TGTTCTGGAACGTACTTTATGGACGTCTTGCAGTAGTCTATGTATAATAA
CAGCGGCGGTGGCGGTTGTCTCAGCCGCCACTTAAGTCGTGTTCTGCAAC
TTGTGTGTCAGACAAAGCGAGTGTCGTCCCCAGTGTCTGTGAAACGGGTA
TAAGCATCTGAATAAAGCGCAGAGAAGTGCTTGGTCTGGTTCGCTGAATC
TTCCAAGGTTGTCTCCTGAGCAGTGGGTACATCAGTATAAGAGCGATCTG
AGGGGTGTTCAAAACCACAGCCGTGTGTGCCCATGTGCACGGCTGGTGTC
AACAGCGTCAGCTGGGCCGGTACGGACATCAAAGGGCACCGAGCAGAGAT
GAAATCATTCTTTTACTGTGAAGGCAACAACATCAGCAACGATCTGATCG
GTAAAGGCTAAAAACCATGAGACTGCTCAGTCTAATCTGCTGATTGTGTA
AGGCAACAACATCAGCAACCATCTGATCGATAAGCATAACCATCAGATTT
ACTCAGTCTAATCAGCTGACTGAATTGTCTACAGCACACCAGTGGTTTTG
CCATCATCGATCACCATCCTCATCACATCACGGTTGATACCCCCTCTGCC
TGTGTGCCAGCAGGAGCCAACAAGGCGGAAGCCTGGACGTGGTGTGGCAA
GACAAACTGAGCATCTCGAGACACATCTACGAGCGAGGCTCCATCGTCGT
CTTCAGGTACACACAGCAGTACATACCTACAGCAACCAAAATACGCTGCA
GCTCTCATTACACTTACCGCCCGCACTTGGTACTATGCAAGAAATGCAGG
CTCAAAACAAGAGAAGTTCAAGACCTTGACCATAAGAACAGGTCTCAGTT
TAGTATCCTACACTAACACCCATATTGTCGCTGTCTGGAGTAGTCTACCC
CTTAAAGAAAACAAGAAGCGATCCTCGGGTTAACTTAAGACATAAGAGGT
TCTTTATCGCGGGCGCTACCAGTACAGTATCTGTGTCATTTACCGTCAGT
GGTAAGATAAGAAAGTAAGAGGTTCTTAAATGCGGCGCTGCCAGTACAGT
ATCTGTGTCATTTACCGTCAGTTCAGGCGGCACCAGGTATCATGCTCTGT
TGTGCGTATGATACCTCCCTCACCTTTGCGGAATACTGCTGTAGCTGTGT
AACGCCCAAAATGTTATCAAGGGTGCGGTATCTATCTTCGGTGACGTTGT
ATGCATCCAGACGGTCTGTGACGCCAAATAGGCCTAGACCACCGTAGCCA
AAGAGCGAGTGTCTGCAATCTGTGCGTACATGTTGGCACCAGCAAAAATT
AGTGGTACTTTGCCACCGACACTCCATTAATGACCAGCCAAGAAGCTGCC
CTTTGCTCGACCAAAGCCCAGCGCGATCGGTTCCACCCCGACCACGACTC
TCCCGCTCGCGTCATCGTTTCACCCAATGATTGATCGCGCTATCTTGAAG
TTCCCTCCCCCCCGCGGCCATGGGTGTTGGTGGAGCCCTCCTCTTTTAGA
TTAGCCGCTGTTCGGCCACAATGCAGCAGCAGCAGCAGCAGCAGCAGCGG
CAGCAGTCATGGCTCTCCGTCATGTTTCGTCTGAGCCGCTTCTGATGTGC
ACCCGCACACCCCAACAATGCATCAGAATTCTGTAGCGACATGAGACATG
CGTCGGCGCTGCCTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTNNTTGTTTTTTCTCACATTAACTCTATAGTCCACAAAAAATGG
GAAGCCCGTGGTCTCAAAACCCGGCACATACGACGCCGCGGGGAAACAAA
ACAAAAATAGGGTACAAACCACTCGGAAAAAGAAAGCAAAATGATAGAAA
GAAAATAACAGGTATCGCACAGACCGTTCGAGAAAAGAGCCCCCGGAAAC
CGATCAAAATAGAACAAAAAACAATAATAAAGGAGGACGCTTCCCACACC
CGCCTAAAGAAAACATCAAGGGTAACGTACCAGCACCAGGCACTACGCAC
CAGGGTATGGGAGTAACGGAGAAAACAGGACAAAGAGGCGGCAGATGGGC
AGACAGCCAGATGTACAAAAACAAAAGCAAAAGCAAAAGCGAGATAAAGG
TATCCAACACAGCGGAGTAGGCAGGGAGGTCATGAAAAAAGAAACACAGC
ACAGAGGCCGAAGGCAATACAAAGGACATACACAAAGGAGTCTAGCATAC
AGCAGGGACTATATATGTTTCTGTTTCGTTCGACCGGATAACAAGTATGG
GTACGTGAACATTATGATAGTAGTAGATAATAGTCTACACCAGCACTCAA
CGCTGTTTTGTTTTCTTATGGGAGACCCGTTTTGTTTTCTCAAATATGAA
CCGACAACCACGACTCCTTTACACTGTACGAGCAGTGCTCTTTCGATCAC
GGTTTCTCTCGGTTTGATAAATTGGAAACACCTCTCGATTTTGCGATTTC
TCACCTACGTATTCATCAGGACCTCCATACTCCAAGTAGATATGGCCACC
ATTCGCTCTTTTCTTATGATGGCCATCCTCCAAGTAGATATGGCCATCAT
TCCCTCGTTTCTCACCGTAGTCCCATTCATTCCCCACTAACATTCGAGCG
TACTCCAGATATATATTTTTTTCATGTTCCACACCATGTCAAACTCGCCT
TTACCCCCGACGGAGACTCGCGCTCTGCTGCCTGCGTTCGTGTAGTCTAT
CTCGCTCAGAATGGAGTTCGGTTTGTTTTCAATTGCGTTCTTGGCGAACG
GCTGTAATGCCGGCGTTTATTTGCTCTTTAGCTTCAACTTTGCTGAGGAG
CCCCTTCAACCCAAAGAAGTGGATATTGAAATTGTGTCACATGGTTGCAT
GCCGGGCTTTGAACTGCTGTAATTCTGTTTTTTTTGTGCAGGAATCCCTT
CGACCCGAAAGAGCGGGTCGTGAAGCGACTGATCGGCGTCGATGGCGACT
GGGTGCGACCAAGGGGCAACAAGCACAACCTGATGAGAGTGCCGGAGGGA
TACTGCTGGGTAGAGGGTGACAATCACGGGGTCAGCGGAGACAGCAACCA
TTTTGGACCGGTGTGTTGGTTGAAAACCTTTGTTTGGTATGAAACATTGT
GTATGGTAGTATATCTAGAAGCTTCCGCTTTGGCATCACTATGTATTTTG
TTGTTGTCGCCAAATGTTTTTTTTTTTGCTTCGGGTAAGTGCTTGAGGTG
CTATCATAGCAGTAGGGCAATGGTCCCATGTACCATAGTCCTGTGGTTTA
TGTATAGCCCGTATACGTGTACAATGTCTTATCGCTGTTTCAGTACACCG
AAGAATGTTCCGATAATACCGTTGGTTGCGTAAGATATCACACCCCCTGG
ACGATTTCAAAGCTCGATTACTCGGCACGGAAAGAAGTGACAGTTACCGA
AGATGGCGGATTTGGAACCGTCCCGTCGAGAGCTCTTCGAACAATTGTCG
CTTTCCTTCGGCATCCTCTTGGTCGTGGAGTAATCGAGCTTTGATAATCG
GTCCAGGGGGTATGGTATCTTACGTCACCTGTACGGTGCTCCTTAGGGAG
TGCCTAGGTACTGCTGTTGACTGACATTGAAACAACACCGTGAAGAGGCG
ACTTGCCCGGTGTCGCCGTGTGGCATACCACTCTGTCTTGAAATTATGAA
TGCCATCCGGATACAAATGAGGTTGTCCCAATGGCTCGTATGTTTCCAGA
GTTGGAGGTATTTTGGGTGAGAACTGCTGTAAACCGGCATCGCTGTCCGT
TCCAGCTGCTGCTGCTGATGTGGTAGTTGTACACTTGCCGGAAAGATTGG
AGGCACAGGATTTAGTCGACAGGCTGACCCCAGTACGTCGCCACTGCTAA
CTCTTGTGACGCTTTGTGCAAGCGAACGAATATCGTCGGCGTTGCTAGCT
ACAGAAGTCCCAACCTCGTTTTGTTTGTTTTCTGTCTCCTTGTCGCTTGA
GTCTTTCGAACTGAAGCGGCCGCAAACTGACCCTCTAACCTGGCCACTGC
TGACTCTTGCCGTCGCGGTTGGTGTTGAAACAACAAATAAAAAATGGACG
CCGTCCTCAACTGCGGCTACTCGGGACTGTCAGATACCGCTGGCGCTCAT
TGAGGCAAAAGCGACCCACGTTTTGTGGCCACCAGGAAGAATGCGCAGGC
TGGGCCAAGATTTGCCGGTAATCCACCGCGGTTTGAATCCATCCCAAGCG
TGACAGAGCGGGCGCCACTTGTGCTTATTCTCTTTGTGTTCCGAAGGGGG
GGTCCCAAGGGAAGACGCACAGACGTGGTAAACAGAGGAGTATATATACG
GCTTGGGAGCAGCGATTCACTGGCGGAGTTTGGATATGACGTGCGGCTTT
TTTGCTGAGGGTACAGAAAGAGCCCATTCGCTCGTGTTCGCTTCTGGTGG
CGCACGGCTCTTGTGCTGCTAAATAAAGGTACAGGGCTACTTCGCTTTAG
CCGATCGATGTATTGGGCTATGGCCGCCCTTGATTGTTTTGTTAAAACAT
CCAACTCGAGGTGTTCATGGATGAGACGAAGAAAACGTGTTGTCGTTGTT
GTCGTGCTCATTTGCTACTTCTTCGTTCTTGATAGCTGAGAGCGCGAGCC
ATAACGTCAAAGGGTAGCTCTAAGGATAAGGGTTCGGCCCTTTTGCTGAA
CCGCTGCAAGTTTGTGATTTGACCGATGGATTATTTTCCGTGAGCGGTAT
GCCCGTATGTTCCTGCAACTGGCCAGAGTTGTCTGAATCATCCCCCCCCC
ACAGTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGT
AAAACAAGCCGCCCCCCCCGGTGTTTGCCATCGGGAGTGGGTTTTCGTCG
CTTGGCAAGGACGTTGTAAAACAAGCCAATTCACTTCGTGAACTCGGC back to topCoding sequence (CDS) from alignment at Scaffold_376:86604..91901- >EsuBft937_3a-0001 ID=EsuBft937_3a-0001|Name=EsuBft937_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=528bp|location=Sequence derived from alignment at Scaffold_376:86604..91901- (Ectocarpus subulatus male Bft15b)
ATGGCCCAGGCCGCAGCGGGTAACGTTCTCCGTGCATCACTGTTTGCCAT
GCCGGTGGCGTTGGCGTTCCATGACGTCGTAGGGTCCCCGGTGCAAGTGG
AAGGGAGGTCGATGCAGCCGGCGATCAACCCGCACTTGGGACCAGAGAGC
CAACAAGGCGGAAGCCTGGACGTGGTGTGGCAAGACAAACTGAGCATCTC
GAGACACATCTACGAGCGAGGCTCCATCGTCGTCTTCAGGAATCCCTTCG
ACCCGAAAGAGCGGGTCGTGAAGCGACTGATCGGCGTCGATGGCGACTGG
GTGCGACCAAGGGGCAACAAGCACAACCTGATGAGAGTGCCGGAGGGATA
CTGCTGGGTAGAGGGTGACAATCACGGGGTCAGCGGAGACAGCAACCATT
TTGGACCGATACCGCTGGCGCTCATTGAGGCAAAAGCGACCCACGTTTTG
TGGCCACCAGGAAGAATGCGCAGGCTGGGCCAAGATTTGCCGGTAATCCA
CCGCGGTTTGAATCCATCCCAAGCGTGA back to top
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