EsuBft2050_2a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft2050_2a-0001
Unique Name	EsuBft2050_2a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_376	contig	Scaffold_376:47035..52309 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FLF6
ProteomeId	EsuBft2050_2
Protein domains	IPR018289
Protein domains	Coil
Protein domains	PTHR31669
Owner	apollo_admin@sb-roscoff.fr
Note	protein far-red impaired response 1 os:arabidopsis thaliana gn:far1 pe:1 sv:1 [Automatic annotation]
Nb exon	8
Max annot lvl	2759\|Eukaryota
Length	3078
Hectar predicted targeting category	other localisation
Evalue	2.17e-18
EggNOG OGs	2CMGX@1\|root,2QQB8@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14

Cross References

External references for this mRNA


Database	Accession
GO	0010017
GO	1901360
GO	0044464
GO	0048522
GO	0004571
GO	0044710
GO	0006725

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_2a	EsuBft2050_2a	Ectocarpus subulatus male Bft15b	gene	Scaffold_376 47035..52309 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_2a-0001	EsuBft2050_2	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_376 47179..50644 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_2a-0001-exon	agat-exon-33044	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 47035..47196 +
EsuBft2050_2a-0001-exon	agat-exon-33047	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 47591..47734 +
EsuBft2050_2a-0001-exon	agat-exon-33048	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 48566..48772 +
EsuBft2050_2a-0001-exon	agat-exon-33046	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 49024..49253 +
EsuBft2050_2a-0001-exon	agat-exon-33049	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 49431..49581 +
EsuBft2050_2a-0001-exon	agat-exon-33050	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 49772..49960 +
EsuBft2050_2a-0001-exon	agat-exon-33045	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 50154..50245 +
EsuBft2050_2a-0001-exon	EsuBft2050_2a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_376 50407..52309 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_2a-0001-exon	agat-five_prime_utr-5126	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_376 47035..47178 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_2a-0001-cds	EsuBft2050_2a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_376 47179..47196 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft2050_2a-0001-exon	agat-three_prime_utr-7898	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_376 50645..52309 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_376:47035..52309+
coding sequence from alignment at Scaffold_376:47035..52309+

spliced messenger RNA

>EsuBft2050_2a-0001 ID=EsuBft2050_2a-0001|Name=EsuBft2050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3078bp|location=Sequence derived from alignment at Scaffold_376:47035..52309+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
AGAGGAGATCTTGAAGCTTCACGATAGACTCAACGGCCTGGTGTTTCCCA
ACTTCGAAGACGGGTCAGGAGAGTACGGGGACAAAACATGGCGGAAAGCG
TTTGGATGGTCGAGAAGGCCGTCTGATGAGGATACGCTCTGCAGATGAAC
AAAAAATCGAAGCTCTTCACGAAGGCCTCCGAGTCGACGTCCGGGAGGCG
CAACAGGTACAACTGCGCGCAGATCAAGTGTATCCATTCGGGGCAACCGA
GAGAGACCGCAAAAACCGCGGATGTCCACGCTCGCAAGAAGACATCCACC
AAGAAGGACGTTTGCCTGTGGCGCACGTACAAGGGTTCGGGAGGAATCGG
GCACGACCCCCCGCGCGTTATCGAGAACGAGATGACCAGGGAGGATCTCG
AAGCAGAATCCGCCAACATCAAGAAGATGCACGAGAAAGGCGTCAAAACG
GCGGAGATCTACAAATACCTGCAAGAAACGGGAAAGAGGCTGGGAGACAA
AGGAAAACAGATGCTGCGTCTCATGAGGGCGCAGTTCGACAAGGACAAAA
AGAACAGCCGCGGTGGTTTGAACGACGCCCAGCAGTTGCTTCACCAGCTC
GAGGAGGACGGCGCTTTCAAGAACTCCAAGCTCGACGAGGAGAACCGCCT
GACGGACATCGCTTGGGCACACGAGGAGCAGCGGCGCAACGCGGAGAAGT
ACTTTCCCATCATCGTATCAGACACCACATTCAACGCCAGCAAGTATAAC
CACAAGCTGGCATTCATAGTGGTGGTAGACAAGGAGAACCTCACGCAAAA
TGCGATGCAGGCGCTGTTGGAAACCGAGAGGCACGAATCCTTCTTGTCCT
TGATGGAGTCTTTCAAGAAGCTAATCCGCGGAAGCAGCCCACGGGTGATC
TTCACGGACACAGGTCAGTCAGAGATGTCGGCCATCGCGCAGGTCTTTCC
GGGGGCGCTTAACAAGCTGTGCTACTGGCACATGGAGCAGAACGTGAAGG
AACATGGGAAGGGACTTCCGGAGGGTGTCATCCAGGGAGTGCTGCGAAAG
TTCAAGGCAGCGGCATTCGCGCCAACGGTCGGGGCTTTAGTCGAGGCAAA
AACGGAGCTCCTCGCGATGTTGGACCCTGAGAGCACAATGAATAAGTACA
CGGCAGGAGACATCTTTAGCCCAGGGCGGGCTGGCAGGTGGGCGGCATTT
GTCCACCCTGGGCTTCACACCCTCGGCATTGCCTCCACGCAGCGGGTGGA
ATCCATGAACTGCGCCTTCAAGAAGCTGGTGACCAGGACGGGAGACTTGT
TCGACCTTGACCGTGCCATCGTAGGCAAGGTTAGCGATGGCAAGATCAAG
GCCGAAAGGTGGGATGGCGTGTACTTGCGGCCCCGTGTGTCAGGGACAGC
CCATGGCAAGTGACGGTGGTGCGCCCTTCTATGTAGAGNNNNNNNNNNNN
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AGATTGCCGGACACATAGACGTGTTGAGTGATTATAGCTGTATACTGAAA
CCCCACGGAAAGGGGAGGTTTGAGATTGCCAGACACATAGACGGGTTGCG
TGGGGATAGCTGCTGGAACCCCACGGGTTGAGTGATGTTGGAGTGCCGGA
CACATAGACGCGTTGAATGAGGATAGGCACATATTGAACCTCAGAGGTGA
TTTGTATTGGAGATTGCGAGACACCTAGACGTGTTTAGTGAGGATAGCTG
CATACTGAAACCTCACAGATGCATTGGTTTTTGCCAGACACATAGACGCG
CTGAGTGGGGATAGCTGCATNNNNNNNN

protein sequence of EsuBft2050_2a-0001

>EsuBft2050_2 ID=EsuBft2050_2|Name=EsuBft2050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=422bp
MNKKSKLFTKASESTSGRRNRYNCAQIKCIHSGQPRETAKTADVHARKKT
STKKDVCLWRTYKGSGGIGHDPPRVIENEMTREDLEAESANIKKMHEKGV
KTAEIYKYLQETGKRLGDKGKQMLRLMRAQFDKDKKNSRGGLNDAQQLLH
QLEEDGAFKNSKLDEENRLTDIAWAHEEQRRNAEKYFPIIVSDTTFNASK
YNHKLAFIVVVDKENLTQNAMQALLETERHESFLSLMESFKKLIRGSSPR
VIFTDTGQSEMSAIAQVFPGALNKLCYWHMEQNVKEHGKGLPEGVIQGVL
RKFKAAAFAPTVGALVEAKTELLAMLDPESTMNKYTAGDIFSPGRAGRWA
AFVHPGLHTLGIASTQRVESMNCAFKKLVTRTGDLFDLDRAIVGKVSDGK
IKAERWDGVYLRPRVSGTAHGK

mRNA from alignment at Scaffold_376:47035..52309+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft2050_2a-0001 ID=EsuBft2050_2a-0001|Name=EsuBft2050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5275bp|location=Sequence derived from alignment at Scaffold_376:47035..52309+ (Ectocarpus subulatus male Bft15b)
AGAGGAGATCTTGAAGCTTCACGATAGACTCAACGGCCTGGTGTTTCCCA
ACTTCGAAGACGGGTCAGGAGAGTACGGGGACAAAACATGGCGGAAAGCG
TTTGGATGGTCGAGAAGGCCGTCTGATGAGGATACGCTCTGCAGATGAAC
AAAAAATCGAAGGTGAGTTATGGAACAGCTTTTTGCGAAAGGATGACAGT
GTACCCTTCCCCGTCGTGACTCCTTCCCCTTCCCTGGCATGCAGCTCTGC
GTTGGTGTGCGGGAAGGTGCGTTCCACCGAAAACGGCGCTCTTGATGCAC
GATGCACCTGGCTATAGGCTCGGTTTGTTAGGCTGGCCGACTGAAAGCCC
AGCGATAGAGATGTTGTTTACGAAGTATTTGTTTGCTTTTTCGCCACATT
AGCTCTCGATTCCGTCTCTATTACAAAACATCCATGGGAGACCGTAGTCA
CAAAGCCGCTAGGTACACTCGCCGATACAATAAACACGCGATATGTGAAC
CCCTTGTTCCACATACATACAAATATTCACCGCCAAAAGTGTTTGCCACC
GCCCAGCTCTTCACGAAGGCCTCCGAGTCGACGTCCGGGAGGCGCAACAG
GTACAACTGCGCGCAGATCAAGTGTATCCATTCGGGGCAACCGAGAGAGA
CCGCAAAAACCGCGGATGTCCACGCTCGCAAGAAGACATCCACCAAGAAG
GTACTTGTTTTCTGATTTTCTGCCCGACGCAGCCATGACCTCGTGCACAT
CTCCTCATGGTTGCGCGAGGTGGACTGAATTGACATGAGGTTCGCGGGTA
AAGGTGCTGTTTTCCTTCGTTTGGTGTACATGCTGGGACAGGTAGTCAAG
GTTGCAAGCTGCATACGACATGGAGTATGCGTAAAGAAGTCGGGGAATCA
TACCCGATTTTCCACCCTTTGCGGAATGGTTGTTGTCTGAATCAGCCTAG
GTCGGCGGTGGTTTTTGTGTGCTGTTTTTGCATGTGGGCCGCACTCTCTG
CCAATCCACACGTATGCAGACCTTATAGCCAGGGAGTTCCAGTGTTTTGC
TGCGGGTTTTGCCGCATCTGTCTTGCATTGCTTCGTTCCAACCGCGCGCT
CCATCGACCACACCTCCTGCGCCTTGTCTGCGCTGCAGTGTTTGTTAGGA
TCGCGACAAGATGCGCGCGTTGTTTTGCACGTATCGACAGTTGGTGCGTG
CGGGGGTCGTCGTGCGGTGCGTTCTGTAGTGTTTGCTTCAAGTCCTTCCA
CAATGATTTGAACGGGAAACGCCTCACCACCGGCACAGACAGGCGTTTGT
GACTAATGCCTTGCTTCCTCTTGTGCGCGCTGTTTCTTTCGCGTGGAAGT
TGTGTTGTGTTTTTTGGCGTGAACCAGAGCCAGTCGCAAGGCAAGCCTCC
TCAACGCGTAGAACGGCAGGTAGAGGAGCGTGCGTCGTTCCGTGTGACAA
AGTGTTATGCCTCTTGTGACCTCCTGCGCTTGCCCGCAAACACTCGCGGC
GTGCCCCCGTCCGTGTTCCCCAACGAAGCAGGACGTTTGCCTGTGGCGCA
CGTACAAGGGTTCGGGAGGAATCGGGCACGACCCCCCGCGCGTTATCGAG
AACGAGATGACCAGGGAGGATCTCGAAGCAGAATCCGCCAACATCAAGAA
GATGCACGAGAAAGGCGTCAAAACGGCGGAGATCTACAAATACCTGCAAG
AAACGGGAAAGAGGCTGGGAGACAAAGGAAAACAGATGGTGAGCTAGGGA
GGGGTTGAGCTCTTGACGCGACAGACAGAAGGGCAGGGCGGGGTAGCACA
TTAAGTCCGAGGAGTATCACGGTATACCCTCCGGCGGCAATGGTTTTCAA
CGCGTCCCACACGTAGCGTCTTGACCATAATGTTAACGTCGTTTGAGCAT
GTTGGCGTCCGAAATTCCTACCTTCGATTGACTTTGGAAGTGTCGTGAAG
CCAACCACATCCCCTGTGATCGTGCGTGTTGGGAGGTAGCTGCGTCTCAT
GAGGGCGCAGTTCGACAAGGACAAAAAGAACAGCCGCGGTGGTTTGAACG
ACGCCCAGCAGTTGCTTCACCAGCTCGAGGAGGACGGCGCTTTCAAGAAC
TCCAAGCTCGACGAGGAGAACCGCCTGACGGACATCGCTTGGGCACACGA
GGAGCAGCGGCGCAACGCGGAGAAGTACTTTCCCATCATCGTATCAGACA
CCACATTCAACGCCAGCAAGTGAGTGCTGCTATAGCGCGTCGGGCATGCT
GTGTTTTGCTCCCTGTAGCACCCGCCCTGGTCCGAACAGTGCCATGCCGT
GAGGTAGCTTGTTGCTGTGCGTGGACAGCGCTGTCACAGGCGCGCCATGC
CCGACGTTGGTGCTTTGTGCCGCTGTATTACGTCTGCCCCCACCAGGTAT
AACCACAAGCTGGCATTCATAGTGGTGGTAGACAAGGAGAACCTCACGCA
AAATGCGATGCAGGCGCTGTTGGAAACCGAGAGGCACGAATCCTTCTTGT
CCTTGATGGAGTCTTTCAAGAAGCTAATCCGCGGAAGCAGCCCACGGGTA
AAACGACGGTGTGACGCTGTGGAGCGGTAGCGAGGGTGAGACGAGGATGG
CCGTGCCCCCGATAAATAGCGCGAAATACCCCCATTCGATCAACACTAAA
CTACATCTTGAAACAGCCATACATCATGTATTCCCCTGAATGTCTTGTGT
CCCCTGCCCGCGCGTGGTTACTTCCGTGGCGAAGTAGGTGATCTTCACGG
ACACAGGTCAGTCAGAGATGTCGGCCATCGCGCAGGTCTTTCCGGGGGCG
CTTAACAAGCTGTGCTACTGGCACATGGAGCAGAACGTGAAGGAACATGG
GAAGGGACTTCCGGAGGGTGTCATCCAGGGAGTGCTGCGAAAGTTCAAGG
CAGCGGCATTCGCGCCAACGGTCGGGGTGAGAGAAATCTTGAAATTCGCC
AGATTGTCGGCAACCCCCGTCCTGTTGAAGACCGCCTCGGGGACAGTGAA
GTGCAAACGTTCCTACAGCACGTGGTGACACCGTATGCCTTGTTTTTCAT
GTGTGCTTCCTTTCTCCCACCTCATTTCGTACACTCCCTCGCACGCTCCG
CGAAATCTCGCTCTGGCAGGCTTTAGTCGAGGCAAAAACGGAGCTCCTCG
CGATGTTGGACCCTGAGAGCACAATGAATAAGTACACGGCAGGAGACATC
TTTAGCCCAGGGTAAGCACCGCTACACATGGTAGCCTTCGGAAGGCGATG
GAAGCGGACCCCAAGTGTTGTTCTGCGTGTACAACATTTCCTGCTTTGGA
CGCATCGTAAGGCAGCGACGTTTTCGTCCTTGTGTGTCTCCTAACCTTGC
GCCATGCCGTAACGTGTAACAGGCGGGCTGGCAGGTGGGCGGCATTTGTC
CACCCTGGGCTTCACACCCTCGGCATTGCCTCCACGCAGCGGGTGGAATC
CATGAACTGCGCCTTCAAGAAGCTGGTGACCAGGACGGGAGACTTGTTCG
ACCTTGACCGTGCCATCGTAGGCAAGGTTAGCGATGGCAAGATCAAGGCC
GAAAGGTGGGATGGCGTGTACTTGCGGCCCCGTGTGTCAGGGACAGCCCA
TGGCAAGTGACGGTGGTGCGCCCTTCTATGTAGAGNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTGGAGA
TTGCCGGACACATAGACGTGTTGAGTGATTATAGCTGTATACTGAAACCC
CACGGAAAGGGGAGGTTTGAGATTGCCAGACACATAGACGGGTTGCGTGG
GGATAGCTGCTGGAACCCCACGGGTTGAGTGATGTTGGAGTGCCGGACAC
ATAGACGCGTTGAATGAGGATAGGCACATATTGAACCTCAGAGGTGATTT
GTATTGGAGATTGCGAGACACCTAGACGTGTTTAGTGAGGATAGCTGCAT
ACTGAAACCTCACAGATGCATTGGTTTTTGCCAGACACATAGACGCGCTG
AGTGGGGATAGCTGCATNNNNNNNN

Coding sequence (CDS) from alignment at Scaffold_376:47035..52309+

>EsuBft2050_2a-0001 ID=EsuBft2050_2a-0001|Name=EsuBft2050_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1269bp|location=Sequence derived from alignment at Scaffold_376:47035..52309+ (Ectocarpus subulatus male Bft15b)
ATGAACAAAAAATCGAAGCTCTTCACGAAGGCCTCCGAGTCGACGTCCGG
GAGGCGCAACAGGTACAACTGCGCGCAGATCAAGTGTATCCATTCGGGGC
AACCGAGAGAGACCGCAAAAACCGCGGATGTCCACGCTCGCAAGAAGACA
TCCACCAAGAAGGACGTTTGCCTGTGGCGCACGTACAAGGGTTCGGGAGG
AATCGGGCACGACCCCCCGCGCGTTATCGAGAACGAGATGACCAGGGAGG
ATCTCGAAGCAGAATCCGCCAACATCAAGAAGATGCACGAGAAAGGCGTC
AAAACGGCGGAGATCTACAAATACCTGCAAGAAACGGGAAAGAGGCTGGG
AGACAAAGGAAAACAGATGCTGCGTCTCATGAGGGCGCAGTTCGACAAGG
ACAAAAAGAACAGCCGCGGTGGTTTGAACGACGCCCAGCAGTTGCTTCAC
CAGCTCGAGGAGGACGGCGCTTTCAAGAACTCCAAGCTCGACGAGGAGAA
CCGCCTGACGGACATCGCTTGGGCACACGAGGAGCAGCGGCGCAACGCGG
AGAAGTACTTTCCCATCATCGTATCAGACACCACATTCAACGCCAGCAAG
TATAACCACAAGCTGGCATTCATAGTGGTGGTAGACAAGGAGAACCTCAC
GCAAAATGCGATGCAGGCGCTGTTGGAAACCGAGAGGCACGAATCCTTCT
TGTCCTTGATGGAGTCTTTCAAGAAGCTAATCCGCGGAAGCAGCCCACGG
GTGATCTTCACGGACACAGGTCAGTCAGAGATGTCGGCCATCGCGCAGGT
CTTTCCGGGGGCGCTTAACAAGCTGTGCTACTGGCACATGGAGCAGAACG
TGAAGGAACATGGGAAGGGACTTCCGGAGGGTGTCATCCAGGGAGTGCTG
CGAAAGTTCAAGGCAGCGGCATTCGCGCCAACGGTCGGGGCTTTAGTCGA
GGCAAAAACGGAGCTCCTCGCGATGTTGGACCCTGAGAGCACAATGAATA
AGTACACGGCAGGAGACATCTTTAGCCCAGGGCGGGCTGGCAGGTGGGCG
GCATTTGTCCACCCTGGGCTTCACACCCTCGGCATTGCCTCCACGCAGCG
GGTGGAATCCATGAACTGCGCCTTCAAGAAGCTGGTGACCAGGACGGGAG
ACTTGTTCGACCTTGACCGTGCCATCGTAGGCAAGGTTAGCGATGGCAAG
ATCAAGGCCGAAAGGTGGGATGGCGTGTACTTGCGGCCCCGTGTGTCAGG
GACAGCCCATGGCAAGTGA