Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| ProteomeId | EsuBft2050_6 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Length | 121 |
| Hectar predicted targeting category | other localisation |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2050_6a-0001 ID=EsuBft2050_6a-0001|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1219bp|location=Sequence derived from alignment at Scaffold_376:20244..21462+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAGCAG
CGAGGACCCTGACCTTAGGACCGCACGGAAAACGTCCGGGCCGAAGGGTC
GCGGAGGGAAGCAGAAGGTGAAGAATGGATCGCCCAGCACCAGCGACGGA
AGCGGGTCGGAGACAAGCGGTGCGTACACCGACGTTGATTTGTCGTCGAG
CGCGATTCGGATGTTCGCAGGGGCCGGCGAAGTTCAAAGCCGTGCGCAGG
TGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCGCAAGAGCAAGCG
CCGCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGAAGC
TTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGAAGCCGCCC
ACAGGGCTCGCTGGGATTACGCTCGCTTGGCCAAACAAGCTAAAATCGAC
GACCTTAGGGGGAAGTTGGAGTTCACACTGGAAGGGCCAAAGGCGATGGC
ACTGCGAGCCTCTATATCGGCCTTGTATGACATGGATGACGCCGACTTCA
TGCCCAAACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCCCC
AGTACGTCCGCGTCTGCGTCAGTGTCATCTGCAGCGCCACCGCCTGCCAC
TACTCCTGAGGTCACTGCCCTGCCTGCGTCCATTACGACATCACCTGCTG
CTTCAACACCCGCGTCTGCGGCCGGGCTAGTGACCCTCCCTACGTCCGTG
TCTTCATCGCCTGATACGCCAACGCCCACTTCCAGTGTCCGAGACGCTGC
CCCCATCGTTCTGGGCGCAACACGGGCCAGGACAAGGGCTAATGGCCTCC
CGGGATTTACCGGGGCGCGGAAGAGGGGTGTTGGTGATGTAGGACACGAA
GAAAGGAGAGTTTGAAACACAATCCCCTGAGAGGAGACATATTTTTTTGG
CATTGTGTTTTGGGAGCTGGTATGCGTACGTTTTTTCAGTTTTCGCAATG
CTGTGTAGCGTGTAGAGGTCACCAGTCCCCGGCACCCACGTTTGTTTTGT
GTTGTGTGCCGTGTTCTCTCTTGTAGACCATGTAGCCCGCTTGTTTTTTT
TTCTGCACGGGCTACGGCAGCAGCAGCAATGTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNN back to topprotein sequence of EsuBft2050_6a-0001 >EsuBft2050_6 ID=EsuBft2050_6|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=304bp
MHPYLLTYCLIGRPSSSEDPDLRTARKTSGPKGRGGKQKVKNGSPSTSDG
SGSETSGAYTDVDLSSSAIRMFAGAGEVQSRAQVKKEHAAVAAANAQEQA
PRVQQAHTGKLVTAVEALSAAVVSRQALDEEAAHRARWDYARLAKQAKID
DLRGKLEFTLEGPKAMALRASISALYDMDDADFMPKPISAPTPPAAGGAP
STSASASVSSAAPPPATTPEVTALPASITTSPAASTPASAAGLVTLPTSV
SSSPDTPTPTSSVRDAAPIVLGATRARTRANGLPGFTGARKRGVGDVGHE
ERRV back to topmRNA from alignment at Scaffold_376:20244..21462+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2050_6a-0001 ID=EsuBft2050_6a-0001|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1219bp|location=Sequence derived from alignment at Scaffold_376:20244..21462+ (Ectocarpus subulatus male Bft15b)
ATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAGCAG
CGAGGACCCTGACCTTAGGACCGCACGGAAAACGTCCGGGCCGAAGGGTC
GCGGAGGGAAGCAGAAGGTGAAGAATGGATCGCCCAGCACCAGCGACGGA
AGCGGGTCGGAGACAAGCGGTGCGTACACCGACGTTGATTTGTCGTCGAG
CGCGATTCGGATGTTCGCAGGGGCCGGCGAAGTTCAAAGCCGTGCGCAGG
TGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCGCAAGAGCAAGCG
CCGCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGAAGC
TTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGAAGCCGCCC
ACAGGGCTCGCTGGGATTACGCTCGCTTGGCCAAACAAGCTAAAATCGAC
GACCTTAGGGGGAAGTTGGAGTTCACACTGGAAGGGCCAAAGGCGATGGC
ACTGCGAGCCTCTATATCGGCCTTGTATGACATGGATGACGCCGACTTCA
TGCCCAAACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCCCC
AGTACGTCCGCGTCTGCGTCAGTGTCATCTGCAGCGCCACCGCCTGCCAC
TACTCCTGAGGTCACTGCCCTGCCTGCGTCCATTACGACATCACCTGCTG
CTTCAACACCCGCGTCTGCGGCCGGGCTAGTGACCCTCCCTACGTCCGTG
TCTTCATCGCCTGATACGCCAACGCCCACTTCCAGTGTCCGAGACGCTGC
CCCCATCGTTCTGGGCGCAACACGGGCCAGGACAAGGGCTAATGGCCTCC
CGGGATTTACCGGGGCGCGGAAGAGGGGTGTTGGTGATGTAGGACACGAA
GAAAGGAGAGTTTGAAACACAATCCCCTGAGAGGAGACATATTTTTTTGG
CATTGTGTTTTGGGAGCTGGTATGCGTACGTTTTTTCAGTTTTCGCAATG
CTGTGTAGCGTGTAGAGGTCACCAGTCCCCGGCACCCACGTTTGTTTTGT
GTTGTGTGCCGTGTTCTCTCTTGTAGACCATGTAGCCCGCTTGTTTTTTT
TTCTGCACGGGCTACGGCAGCAGCAGCAATGTTTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNN back to topCoding sequence (CDS) from alignment at Scaffold_376:20244..21462+ >EsuBft2050_6a-0001 ID=EsuBft2050_6a-0001|Name=EsuBft2050_6a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=915bp|location=Sequence derived from alignment at Scaffold_376:20244..21462+ (Ectocarpus subulatus male Bft15b)
ATGCACCCGTATCTCCTCACCTACTGCCTTATCGGAAGGCCAAGCAGCAG
CGAGGACCCTGACCTTAGGACCGCACGGAAAACGTCCGGGCCGAAGGGTC
GCGGAGGGAAGCAGAAGGTGAAGAATGGATCGCCCAGCACCAGCGACGGA
AGCGGGTCGGAGACAAGCGGTGCGTACACCGACGTTGATTTGTCGTCGAG
CGCGATTCGGATGTTCGCAGGGGCCGGCGAAGTTCAAAGCCGTGCGCAGG
TGAAGAAAGAGCACGCAGCTGTGGCGGCGGCGAACGCGCAAGAGCAAGCG
CCGCGCGTCCAGCAGGCCCATACAGGCAAGCTGGTGACGGCTGTGGAAGC
TTTGTCGGCAGCCGTTGTGTCGAGGCAGGCTTTGGACGAAGAAGCCGCCC
ACAGGGCTCGCTGGGATTACGCTCGCTTGGCCAAACAAGCTAAAATCGAC
GACCTTAGGGGGAAGTTGGAGTTCACACTGGAAGGGCCAAAGGCGATGGC
ACTGCGAGCCTCTATATCGGCCTTGTATGACATGGATGACGCCGACTTCA
TGCCCAAACCCATCTCGGCCCCGACGCCACCCGCTGCAGGAGGTGCCCCC
AGTACGTCCGCGTCTGCGTCAGTGTCATCTGCAGCGCCACCGCCTGCCAC
TACTCCTGAGGTCACTGCCCTGCCTGCGTCCATTACGACATCACCTGCTG
CTTCAACACCCGCGTCTGCGGCCGGGCTAGTGACCCTCCCTACGTCCGTG
TCTTCATCGCCTGATACGCCAACGCCCACTTCCAGTGTCCGAGACGCTGC
CCCCATCGTTCTGGGCGCAACACGGGCCAGGACAAGGGCTAATGGCCTCC
CGGGATTTACCGGGGCGCGGAAGAGGGGTGTTGGTGATGTAGGACACGAA
GAAAGGAGAGTTTGA back to top
|