EsuBft2050_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft2050_7a-0001
Unique NameEsuBft2050_7a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_376contigScaffold_376:12829..14551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft2050_7
Protein domainsNON_CYTOPLASMIC_DOMAIN
Protein domainsTMhelix
Protein domainsTRANSMEMBRANE
Protein domainsCYTOPLASMIC_DOMAIN
Ownerapollo_admin@sb-roscoff.fr
Nb exon2
Length113
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_7aEsuBft2050_7aEctocarpus subulatus male Bft15bgeneScaffold_376 12829..14551 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_7a-0001-exonagat-exon-33059Ectocarpus subulatus male Bft15bexonScaffold_376 12829..13406 +
EsuBft2050_7a-0001-exonEsuBft2050_7a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_376 13998..14551 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_7a-0001-exonagat-five_prime_utr-5128Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_376 12829..13075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_7a-0001-cdsEsuBft2050_7a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_376 13076..13406 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_7a-0001-exonagat-three_prime_utr-7901Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_376 14231..14551 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft2050_7a-0001EsuBft2050_7Ectocarpus subulatus male Bft15bpolypeptideScaffold_376 13076..14230 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft2050_7a-0001 ID=EsuBft2050_7a-0001|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1132bp|location=Sequence derived from alignment at Scaffold_376:12829..14551+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCCTTTTCTCAAAAAGGGACAGCCCAAAAAAAGATATGGAAAAACGACAA
CCCACTTGTTACGCTGTCTTTTTCCAAAAACGAGGTGTTCGATTATTCTC
GGAGGCGTTTGCGTGCGCGCGCCAGCGCGCGCGAACGATTTTTGAATTCT
TGCAGTTCGCGCCGCTTCTCTCTCGCACAAGCGCACAAGCTACATCAGCA
CACCACGCGTATCCACACCGCACACACACCACGAGCCACCGCATACCATG
GATGTCATGAAACTAGACAACGTTCAACCTCTCCCGCTGGAGTTCAACGG
GTATGTCGAGGGCACGTTGGAGTTGCTCCTGGGCGGCAAGGGCCTCTCGC
AGATCAAGCTTCTCAAGCACCTCCAGAACGTGTGCATCGTGTACGCTTGC
TTGGCGGTCAAGCGGAACGCCGGGATCGTCTCCACGGAGGCTAAGTACAA
GGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCTTCAAGT
GGCTCAAGGAAAACGGCATAGTGATCAAGCAGGCGTGGCTGACGTTCGAG
GTCATGGGCAGAACAAGTCTGAACGGAGCGCCGGTCCTGTTCACCGACGG
GAAGAAGTTGTGGAAGCGCTTCGACAAGGTCATGCGCGAAATGAAGAAGA
CGTACAACAAAGTGTGGGACAGGTGTGTAGACTCTTGTGTGGTACTGCTG
TATTGCGTGGTACTGCTGTTTTGCTCCGCATTAGTGGTTGAGGCTCGATA
CAACTTTTGGCCCAAATATATCTGCAGTAGCGTGTTGTGTATGCTCCCGA
ATCAGCGGTAAACTACAAGCCCAACATCGGAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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protein sequence of EsuBft2050_7a-0001

>EsuBft2050_7 ID=EsuBft2050_7|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=187bp
MDVMKLDNVQPLPLEFNGYVEGTLELLLGGKGLSQIKLLKHLQNVCIVYA
CLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTF
EVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCVDSCVVL
LYCVVLLFCSALVVEARYNFWPKYICSSVLCMLPNQR
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mRNA from alignment at Scaffold_376:12829..14551+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft2050_7a-0001 ID=EsuBft2050_7a-0001|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1723bp|location=Sequence derived from alignment at Scaffold_376:12829..14551+ (Ectocarpus subulatus male Bft15b)
CCCTTTTCTCAAAAAGGGACAGCCCAAAAAAAGATATGGAAAAACGACAA
CCCACTTGTTACGCTGTCTTTTTCCAAAAACGAGGTGTTCGATTATTCTC
GGAGGCGTTTGCGTGCGCGCGCCAGCGCGCGCGAACGATTTTTGAATTCT
TGCAGTTCGCGCCGCTTCTCTCTCGCACAAGCGCACAAGCTACATCAGCA
CACCACGCGTATCCACACCGCACACACACCACGAGCCACCGCATACCATG
GATGTCATGAAACTAGACAACGTTCAACCTCTCCCGCTGGAGTTCAACGG
GTATGTCGAGGGCACGTTGGAGTTGCTCCTGGGCGGCAAGGGCCTCTCGC
AGATCAAGCTTCTCAAGCACCTCCAGAACGTGTGCATCGTGTACGCTTGC
TTGGCGGTCAAGCGGAACGCCGGGATCGTCTCCACGGAGGCTAAGTACAA
GGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCTTCAAGT
GGCTCAAGGAAAACGGCATAGTGATCAAGCAGGCGTGGCTGACGTTCGAG
GTCATGGGCAGAACAAGTCTGAACGGAGGTAAGAAAACAAACGCTTCGCG
ACACACCGTGAGACACAACCGACCGCCGCGACAGAGAGAGGCAGGTTTCG
AATGCGTATCCGACCCTCTGCGCCGCTATGGTCTGCTGTTCAACACGATA
TGCGTAACGCCGGATGCAGGGTGTTTGTGTTTGGTCCGCTCAGCGCAAAT
ACATATTTTCAAAGTTGTCACGTGTGTTGACAGGGCAGACAGGCCATCAC
GGTGCGCTGCCTTGACAGAGTCGTGATCCATCAAGTAGGCAGCACCCACA
AAGCCCTCCACCAGAAGTAACTAGGCTGTGTGTAGCGTGTAGTTTGGTGA
CATAGTCTGGGGTGATAAAGCACGCCCGGCTTTGGGCAGCAATCGGTTAT
AAAATGACGACATGACAGCGATGTGCATCCTCCTGCAAAGTCGGTGTAAC
CAGGAAATGTTACCGACACAAAAAGTCTCATGTTGCATCAGGAAACAAAC
GGTTCGGTTAACGTGCTCATGTCATGTCTGCTTTAGTGCTGTAGGGGATG
GAAAGTCCTGTACTGCTGCTGACAGTGAAGTGCTACTGCTGTTCCACTGT
TGTTTGACTTGCCCTGCAGCGCCGGTCCTGTTCACCGACGGGAAGAAGTT
GTGGAAGCGCTTCGACAAGGTCATGCGCGAAATGAAGAAGACGTACAACA
AAGTGTGGGACAGGTGTGTAGACTCTTGTGTGGTACTGCTGTATTGCGTG
GTACTGCTGTTTTGCTCCGCATTAGTGGTTGAGGCTCGATACAACTTTTG
GCCCAAATATATCTGCAGTAGCGTGTTGTGTATGCTCCCGAATCAGCGGT
AAACTACAAGCCCAACATCGGAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNN
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Coding sequence (CDS) from alignment at Scaffold_376:12829..14551+

>EsuBft2050_7a-0001 ID=EsuBft2050_7a-0001|Name=EsuBft2050_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=564bp|location=Sequence derived from alignment at Scaffold_376:12829..14551+ (Ectocarpus subulatus male Bft15b)
ATGGATGTCATGAAACTAGACAACGTTCAACCTCTCCCGCTGGAGTTCAA
CGGGTATGTCGAGGGCACGTTGGAGTTGCTCCTGGGCGGCAAGGGCCTCT
CGCAGATCAAGCTTCTCAAGCACCTCCAGAACGTGTGCATCGTGTACGCT
TGCTTGGCGGTCAAGCGGAACGCCGGGATCGTCTCCACGGAGGCTAAGTA
CAAGGCAGCGGCCAAGGGCTACAAGGACATCGCTGTCCCAGGATTCTTCA
AGTGGCTCAAGGAAAACGGCATAGTGATCAAGCAGGCGTGGCTGACGTTC
GAGGTCATGGGCAGAACAAGTCTGAACGGAGCGCCGGTCCTGTTCACCGA
CGGGAAGAAGTTGTGGAAGCGCTTCGACAAGGTCATGCGCGAAATGAAGA
AGACGTACAACAAAGTGTGGGACAGGTGTGTAGACTCTTGTGTGGTACTG
CTGTATTGCGTGGTACTGCTGTTTTGCTCCGCATTAGTGGTTGAGGCTCG
ATACAACTTTTGGCCCAAATATATCTGCAGTAGCGTGTTGTGTATGCTCC
CGAATCAGCGGTAA
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