Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6500.XP_005110414.1 |
| ProteomeId | EsuBft2050_8 |
| Protein domains | SSF56672 |
| Protein domains | PTHR19446 |
| Protein domains | IPR000477 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 84 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.74e-16 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,39TZY@33154|Opisthokonta,3BI15@33208|Metazoa,3E41I@33213|Bilateria |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2050_8a-0001 ID=EsuBft2050_8a-0001|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=847bp|location=Sequence derived from alignment at Scaffold_376:7466..8736+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGGTT
TCCCTACTGTCTCACGTAGGCAAGGTCCCCATCCAGATCATCACCAACCA
TCTAAGCGCCTTCTGCGAAGCCAACAGCATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGCGATCCACCGTCGGCATGCTGTTCGTCGTGCGTCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTTTACATGTGCTTGGT
CGACTTGAAGAAGGCGTATATTCGGTGGACCGAGAGATGCTATGGAAGGT
GCTGGCCAGGACCGGGATTCCCGCGAAGCTGATCGAAGTCATCCGCCAAT
TCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAACTATCG
GACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGATGTGTGCTATCCCC
ACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGAGGTCGTTGTCATCC
GATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGGTGTGCTTGGAGGAG
GGGAAGACGGAAGCCGAGGGGGGGGAGGAGACACCCCTTGACCGAGTACG
GAGGGCAGTATGGGGGATGCTGTATGACGATGATGCCGACGTCGTATCGA
GGTTTGCAGAAGGACTGGCGAGAATGATGACCATCATTGTTGAGGTGTTC
GGGGAGTTCGGGCTAACGGTGTCGGAAAAAAAGCCGGAAGCGGTCTTGAT
GTGCGCGAAGGACAAAGCCGACTACAACATCACAGCCCCCCCCGCCTCCA
CCGCTGACCATCGNAGTACGGAGGGCAGTATGGGGGATGCTGTATGA back to topprotein sequence of EsuBft2050_8a-0001 >EsuBft2050_8 ID=EsuBft2050_8|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=186bp
MLWKVLARTGIPAKLIEVIRQFHDGMRARVRMDDGELSDWFFVTQGVRQG
CVLSPLLFNIFFAEVLEVVVIRFSEDDVVLRSLVCLEEGKTEAEGGEETP
LDRVRRAVWGMLYDDDADVVSRFAEGLARMMTIIVEVFGEFGLTVSEKKP
EAVLMCAKDKADYNITAPPASTADHRSTEGSMGDAV back to topmRNA from alignment at Scaffold_376:7466..8736+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2050_8a-0001 ID=EsuBft2050_8a-0001|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1271bp|location=Sequence derived from alignment at Scaffold_376:7466..8736+ (Ectocarpus subulatus male Bft15b)
TGCTGTACAAGAAGGGTGACCGGTCCAACTGTAACAACTACAGGGGGGTT
TCCCTACTGTCTCACGTAGGCAAGGTCCCCATCCAGATCATCACCAACCA
TCTAAGCGCCTTCTGCGAAGCCAACAACATCCTCCCGGAGGAACAGTGCG
GATTTCGACCCGGGCGATCCACCGTCGGCATGCTGTTCGTCGTGCGTCGC
CTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTNTAACAACTACAGGG
GGGTTTCCCTACTGTCTCACGTAGGCAAGGTCCCCATCCAGATCATCACC
AACCATCTAAGCGCCTTCTGCGAAGCCAACAGCATCCTCCCGGAGGAACA
GTGCGGATTTCGACCCGGGCGATCCACCGTCGGCATGCTGTTCGTCGTGC
GTCGCCTCCAGGAGCTGGGGCGGAGAAAGAAAATACCGCTTTACATGTGC
TTGGTCGACTTGAAGAAGGCGTATATTCGGTGGACCGAGAGATGCTATGG
AAGGTGCTGGCCAGGACCGGGATTCCCGCGAAGCTGATCAAAGTCATCCG
CCACTTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACGACGGAGAGT
GACACAGAGCGTGCGACAAGGATGTGTTCTATCCCCACTGCTGTTCAACA
TCTTCTTNTTTACATGTGCTTGGTCGACTTGAAGAAGGCGTATATTCGGT
GGACCGAGAGATGCTATGGAAGGTGCTGGCCAGGACCGGGATTCCCGCGA
AGCTGATCGAAGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTG
CGCATGGACGACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGT
GCGACAAGGATGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCG
AGGTCCTCGAGGTCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTG
CGGAGCCTGGTGTGCTTGGAGGAGGGGAAGACGGAAGCCGAGGGGGGGGA
GGAGACACCCCTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATG
ACGATGATGCCGACGTCGTATCGAGGTTTGCAGAAGGACTGGCGAGAATG
ATGACCATCATTGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGA
AAAAAAGCCGGAAGCGGTCTTGATGTGCGCGAAGGACAAAGCCGACTACA
ACATCACAGCCCCCCCCGCCTCCACCGCTGACCATCGNAGTACGGAGGGC
AGTATGGGGGATGCTGTATGA back to topCoding sequence (CDS) from alignment at Scaffold_376:7466..8736+ >EsuBft2050_8a-0001 ID=EsuBft2050_8a-0001|Name=EsuBft2050_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=561bp|location=Sequence derived from alignment at Scaffold_376:7466..8736+ (Ectocarpus subulatus male Bft15b)
ATGCTATGGAAGGTGCTGGCCAGGACCGGGATTCCCGCGAAGCTGATCGA
AGTCATCCGCCAATTCCACGATGGAATGCGGGCCCGGGTGCGCATGGACG
ACGGAGAACTATCGGACTGGTTCTTCGTGACACAGGGCGTGCGACAAGGA
TGTGTGCTATCCCCACTGCTGTTCAACATCTTCTTCGCCGAGGTCCTCGA
GGTCGTTGTCATCCGATTCAGCGAGGATGATGTTGTTCTGCGGAGCCTGG
TGTGCTTGGAGGAGGGGAAGACGGAAGCCGAGGGGGGGGAGGAGACACCC
CTTGACCGAGTACGGAGGGCAGTATGGGGGATGCTGTATGACGATGATGC
CGACGTCGTATCGAGGTTTGCAGAAGGACTGGCGAGAATGATGACCATCA
TTGTTGAGGTGTTCGGGGAGTTCGGGCTAACGGTGTCGGAAAAAAAGCCG
GAAGCGGTCTTGATGTGCGCGAAGGACAAAGCCGACTACAACATCACAGC
CCCCCCCGCCTCCACCGCTGACCATCGNAGTACGGAGGGCAGTATGGGGG
ATGCTGTATGA back to top
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