Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FIC6 |
| ProteomeId | EsuBft1013_12 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2880.D7FIC6|- |
| Length | 170 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.68e-41 |
| EggNOG OGs | 2EJXG@1|root,2SPZB@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1709bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGATATTGAGCCACT
GCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCCACAAAAAAAG
AGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGCTTCTGGCCTC
GCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCTCGAAGAAAGT
TGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACGAGAGTTAGAT
TCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAA
TAACAACCATATGCACTCCCGGAAAAGTGTTACCTACCGTGCAATCGTCG
AATATTATGCATGCGTGACGGGGGGGGGGCGGGGGGGGGTTTTATTTTTA
TCGTTGGGCATGGTTGAGTCAACGTCTTCGTTTCGTCGCAGCATTGAGGA
TACGTGCGCCTCCGCAGAGACGTGTGGGTTGTTTGGTTGGCAACAACACT
TTGAGAGGATGCCTTGCGGCAACAAAGGAGTATCAACGAAAAAATACGGT
GGAAGAACGCCGAGACCGTTGTGGTTCACGGGCAAGTTGCTGTGCCTGTA
TTCAACGAACACGAGGGCACGCTTTTTGTTTTTCTCTCCCTGCTGCAGGG
CTTGCTTGCTGCGAGGGTCGTAGCCTTCTATTTTTTTTTGGGCCAGGGGG
GGGAGGTTTCATTTTTATAGTTGGGCATGGTTGAGTCAACGTCTTCGTCT
TTTCGTAGCATCATTTTTTTTAGGATACGTGCGCCTCCGCAGAGGCGTGT
AGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATGCCTTGCGGCAACAA
AGGAGTATCAACGAAAAAATACGGTGGAAGAACGCCGAAGACATTGCTGT
CTTGCGGGTAACCTGCCGTGCCGGCAATCTGCGGACATGCATATCGTTTG
GTGTTTTCCTATTTGCAAGACTTGTTCTTGCAACCCAATACTACGTTGGG
TGTTGGCGGGAACTCTGAGGCACGCTTGGGTTCCGCAAATTTGGAGCCTT
GCAATTTTTCCCGTCTCCGCGCATGCTCACTTGAAGCGCAGGAATGTGTT
CGCGATGGGATTCGACAAGACCCCAATTTTTAGCGTGTGTGTGGGTCTCC
TTCAGGTCTGCAACCTGGAGCAATGTTTCACCCACGCGACGAATATTTAA
TGCAGGGATGCAGAGACATCATTAAAAGTTGTATCAACGACAACAACGTT
TTCGATTCACACTCTCCTAATTAGGAAAAAAAAAAGTCGAACATGCCCAC
ACTTTTAATGCCCTAGGTAAAACAAGCACCCTCCGAGACCTACCGGACCC
CGCTTTCATCCGCACACGATGCATGTTAACCATAAAGTGTTGCCGGCATG
AACACACACATTACGAACCAAGTGTACCCGGACACATCTGGTCAGAACGC
TCCACACCGACACCCACAAAACATGTCAGCGAGAATCAACATGTCACACA
TCACACCCCCCACCTCTCCCCGGGATGCGCCGACACCCTAGCACTAACAC
CCAAAACACGTTGTTCCAGCGCCCTCCGCCCTCTACATTGAGGTACCTCC
CTCCCGCGCCCCTCCCTCCCGCGCCGCTATCGTCCCTTTCACGCGTCTCG
TCATCCCGTGGAAACTAGCCTACTTCTGCCGCCATCCGCTCATGTAGCCC
CTAACCCCC back to topprotein sequence of EsuBft1013_12a-0001 >EsuBft1013_12 ID=EsuBft1013_12|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=100bp
MLKKWLRNGIKSDIEPLLGKVGGSEKSEWSTKKEEHACKTAEHDSKASGL
ALHKEMTESHAESSKKVVEEEKEKEEGYQTRVRFLRKMLAGIEKEMFGDE back to topmRNA from alignment at Scaffold_373:615325..617193- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1869bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGGTAAAAAGGCGCG
TACTTTTTCAAAATTTACGGAAAGCGCCACGGCTCGACGTACACACACCG
GTCCCGACCAGGCGAGAGACCCAAGGACTCCCACAACAGACGTGATAAAC
CCACATCAAGAACAACAACGCCGCTGCCATAAAAACCGCACTCAAAGATA
TTGAGCCACTGCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCC
ACAAAAAAAGAGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGC
TTCTGGCCTCGCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCT
CGAAGAAAGTTGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACG
AGAGTTAGATTCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTT
TGGCGACGAATAACAACCATATGCACTCCCGGAAAAGTGTTACCTACCGT
GCAATCGTCGAATATTATGCATGCGTGACGGGGGGGGGGCGGGGGGGGGT
TTTATTTTTATCGTTGGGCATGGTTGAGTCAACGTCTTCGTTTCGTCGCA
GCATTGAGGATACGTGCGCCTCCGCAGAGACGTGTGGGTTGTTTGGTTGG
CAACAACACTTTGAGAGGATGCCTTGCGGCAACAAAGGAGTATCAACGAA
AAAATACGGTGGAAGAACGCCGAGACCGTTGTGGTTCACGGGCAAGTTGC
TGTGCCTGTATTCAACGAACACGAGGGCACGCTTTTTGTTTTTCTCTCCC
TGCTGCAGGGCTTGCTTGCTGCGAGGGTCGTAGCCTTCTATTTTTTTTTG
GGCCAGGGGGGGGAGGTTTCATTTTTATAGTTGGGCATGGTTGAGTCAAC
GTCTTCGTCTTTTCGTAGCATCATTTTTTTTAGGATACGTGCGCCTCCGC
AGAGGCGTGTAGGTTGTTTGGTTGGCAACAACACTTTGAGAGGATGCCTT
GCGGCAACAAAGGAGTATCAACGAAAAAATACGGTGGAAGAACGCCGAAG
ACATTGCTGTCTTGCGGGTAACCTGCCGTGCCGGCAATCTGCGGACATGC
ATATCGTTTGGTGTTTTCCTATTTGCAAGACTTGTTCTTGCAACCCAATA
CTACGTTGGGTGTTGGCGGGAACTCTGAGGCACGCTTGGGTTCCGCAAAT
TTGGAGCCTTGCAATTTTTCCCGTCTCCGCGCATGCTCACTTGAAGCGCA
GGAATGTGTTCGCGATGGGATTCGACAAGACCCCAATTTTTAGCGTGTGT
GTGGGTCTCCTTCAGGTCTGCAACCTGGAGCAATGTTTCACCCACGCGAC
GAATATTTAATGCAGGGATGCAGAGACATCATTAAAAGTTGTATCAACGA
CAACAACGTTTTCGATTCACACTCTCCTAATTAGGAAAAAAAAAAGTCGA
ACATGCCCACACTTTTAATGCCCTAGGTAAAACAAGCACCCTCCGAGACC
TACCGGACCCCGCTTTCATCCGCACACGATGCATGTTAACCATAAAGTGT
TGCCGGCATGAACACACACATTACGAACCAAGTGTACCCGGACACATCTG
GTCAGAACGCTCCACACCGACACCCACAAAACATGTCAGCGAGAATCAAC
ATGTCACACATCACACCCCCCACCTCTCCCCGGGATGCGCCGACACCCTA
GCACTAACACCCAAAACACGTTGTTCCAGCGCCCTCCGCCCTCTACATTG
AGGTACCTCCCTCCCGCGCCCCTCCCTCCCGCGCCGCTATCGTCCCTTTC
ACGCGTCTCGTCATCCCGTGGAAACTAGCCTACTTCTGCCGCCATCCGCT
CATGTAGCCCCTAACCCCC back to topCoding sequence (CDS) from alignment at Scaffold_373:615325..617193- >EsuBft1013_12a-0001 ID=EsuBft1013_12a-0001|Name=EsuBft1013_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=303bp|location=Sequence derived from alignment at Scaffold_373:615325..617193- (Ectocarpus subulatus male Bft15b)
ATGCTTAAAAAGTGGCTAAGAAATGGCATAAAAAGCGATATTGAGCCACT
GCTGGGAAAGGTTGGCGGATCGGAAAAATCAGAGTGGTCCACAAAAAAAG
AGGAACACGCTTGCAAGACTGCTGAACACGACAGCAAAGCTTCTGGCCTC
GCCCTCCACAAGGAAATGACCGAGTCCCACGCCGAATCCTCGAAGAAAGT
TGTGGAGGAGGAGAAAGAAAAAGAAGAGGGTTATCAGACGAGAGTTAGAT
TCCTGCGCAAAATGTTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAA
TAA back to top
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