Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FIC6 |
| ProteomeId | EsuBft1013_11 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 5 |
| Max annot lvl | 2880.D7FIC6|- |
| Length | 257 |
| Hectar predicted targeting category | other localisation |
| Evalue | 0.0 |
| EggNOG OGs | 2EJXG@1|root,2SPZB@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1013_11a-0001 ID=EsuBft1013_11a-0001|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2578bp|location=Sequence derived from alignment at Scaffold_373:610212..614143- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
TTTACGGAAAGCGCCACGGCTCGACGTACACACACCGGTCCCGACCAGGC
GAGAGACCCGAGGACTCCCACAACAGACGTGATAAACCCACACCATGAAC
AACAACGCCGTAGCAGTGGCAGGCCGGCCATCAAGAACGAAAACGGTACC
TCTGCGACTGCAGGGTGGAGGTGAAAGTGGTGCAGCTGCTGGGCATGGTG
TTGCCCAGATCACGCCTGCTGGCGCCGTGCAGCTCCAGCCGGCACCGAGC
GGCATGGTCCGCCAGGCCGTCCACAGCAGGGTTACCCCCCATACCGATAC
ACAACAGGGGGTGCCACCTGGTGCGGGGCTGATGCCGGGCCTCATGGACA
CTGAAATTACTAAAGCTCGTCGGGTGGCCGTAAGCATGATTCTGAACGAC
AAGCAGTTTGGCGAAGCTTCAGGGAAGAATTGGAGCGAATCGGACAGCAG
CGACGACGACAACGGGAAGGACGCTCCGATGTCAAGTGGCAGCAGCAATG
TGTCGGTAGAGGAGAGTTCAGCTCCGTCGGACATAGGCTCACAGGAGCCT
GGAGATGTCGAGTCCGGAGATAGCGTGTTCGCAAAGGAAATACGGGAAGC
AATATTCGGGGGAGGGGGAGCGGGCAGAAAAAAAAACCATGGCAAGCGGA
AGGCGAGCGCCGGCGGCAGCGCCGTAGGGAACAGGAACTCAACAAAGGCA
AGCCTAGGAGCGAGTGCCAAGAAAGCCCGGGGCAAGGACTACCCGCTCTG
GGCCGCACATCTGCTGAGGAGGACATGCGCGCACCGCAAGATCCCGAGGA
TGTCGAAGGAGGGCGACAAGCATGTCCTGGTGCAGGCCCTGCGATCTCAC
GACGGCAACATGAACCGGCCATCTCCGTACTATGACGACCTCAATGCTAT
CACAGCCGGTAACATGAGGAATATGGAGTTTTGCTCCGGTTGGGGGTGTA
CACCCGAGGCGTCCTCTCATGCGAAGGCTTATTCGTTGTGTGGGCCGCTT
TCTCCTATCCCCAATGCTCGCGCAGGCAAATCTGGACGCAGCAACGGGGA
GGAGGACGAGGAGGAGGGAGCCATCCCTGCCAAAGCACTCCTTACGTTTC
GAAATGTTGTCGGGATGGTCGCCATAGCACGTGACAGTAAAGTGCCGTTT
AAAGTCGATAATGTGGAGTACAGTGCGGTGGACCTTTACGACGCCCTGGC
CAAGGAAGACGAAGCGGGAACGGGGGATTCTGCGGGCGGGAGTGCTTCCA
CTGGTGGTTCATCGACGGGTGGTGCAGCCGGACCGGACGGGGATGGTTCC
GTCGGAGGGAGCGGCAGCAACACGGAGCGCAAGGGCCCACACTGCATGAT
GCGGCTCGTTGGGATCCTGTGCGAAGACGCCATCCGCCCACTTCTCATAG
AGAGCCGCTTGCAGGCGACCCGGCAGGACCTGGACACGTCATCAGTCGGG
CCGCGGAACGATTTGTGGACAGAGGTCACCACGCGCTTCCGAGACCCTGA
CCACCAGGTGAGAAAAATCGTGGACGACGAGCAAGTGTCTCACGTCGACC
CGAACATCATCCAGCAACCAAACATCTCCGCGGAGAAGCTTTCCAGGATG
TGGGCTACGGCAAAGGCGAAGTGGAACCAGCCTTATGCCAACTGGAAGAG
TGAATCCGGCAACAACCAGCCATGGCTTTCATTTTGTCAAGGGTGCACGG
ACACGTATGTTCTCGGTTGCGCAATCGAGAAATACCCCGAGCTGAACCAA
GTGTGCAACAATCTCCTCCCCGAGGGCGCTCAGCGAGAGGACGACGGGAC
CGGAGAGGGTATTGTCTGCACAGGCGGTGCCGACCGCCGGGCTGCCGCCA
AGCGGGAGGGCGCCAGGCTCAACGAGCAGAACAGGCGGGGAAAAAAGCCA
AAAAATAAGGGGGTGGGGCAAAGCGTGGCAGAGGCTACGTCCGCTGCCAT
GAAAACCGCACTCAAAGATATTGAGCCACTGCTGGAAAAGGTTGGCGGAT
CAGAAAAATCAGAGTGGTACAAAAAAAAAGAGGAACACGCTTGCAAGACT
GCTGAACACGACAGCAAGGCTTCTGGCCTCGCCCTCCAGAAGGAAATGAC
CGAGTCCCACGCCGAATTCTCGAAGAAAATTGTGGAGGAGGAGAAAGAAA
AAGCAGAGGGTTATCAGACGAGAGTTAGATTCCTGCGCAAAATGTTGGCC
GGCATCGAGAAGGAAATGTTTGGCGACGAATAACACCCATATGCACTCCC
GGAAGAGTGTTACCGTGCAATCGTCGAATTTTATGCATGCTCAACGTCTT
CGTTTCGTCGCAGCATTGAGGATACGTGCGCCTCCGCATAGACGTGTGGG
TTTGGTAGGCAACAACACTTTGAGAGGATGCTTTACGGCAACAAAGGAGT
ATCAACAAAATAAATATAGTGGAAGAAAGCCGAGACCGTTGTGGTTCACG
GGCAAGTTGCTGTGACTGTATTCAACGAACACGAGGATGCGTTTTTTTAT
TTCTCTCCCTGCTGCAGGGCTTGCTTGCTGCGAGGGTCGTAGCCTTCTTT
TTTTTTTGGGCCAGGGGGGGGGGAGGTT back to topprotein sequence of EsuBft1013_11a-0001 >EsuBft1013_11 ID=EsuBft1013_11|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=712bp
MNNNAVAVAGRPSRTKTVPLRLQGGGESGAAAGHGVAQITPAGAVQLQPA
PSGMVRQAVHSRVTPHTDTQQGVPPGAGLMPGLMDTEITKARRVAVSMIL
NDKQFGEASGKNWSESDSSDDDNGKDAPMSSGSSNVSVEESSAPSDIGSQ
EPGDVESGDSVFAKEIREAIFGGGGAGRKKNHGKRKASAGGSAVGNRNST
KASLGASAKKARGKDYPLWAAHLLRRTCAHRKIPRMSKEGDKHVLVQALR
SHDGNMNRPSPYYDDLNAITAGNMRNMEFCSGWGCTPEASSHAKAYSLCG
PLSPIPNARAGKSGRSNGEEDEEEGAIPAKALLTFRNVVGMVAIARDSKV
PFKVDNVEYSAVDLYDALAKEDEAGTGDSAGGSASTGGSSTGGAAGPDGD
GSVGGSGSNTERKGPHCMMRLVGILCEDAIRPLLIESRLQATRQDLDTSS
VGPRNDLWTEVTTRFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLS
RMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPEL
NQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGK
KPKNKGVGQSVAEATSAAMKTALKDIEPLLEKVGGSEKSEWYKKKEEHAC
KTAEHDSKASGLALQKEMTESHAEFSKKIVEEEKEKAEGYQTRVRFLRKM
LAGIEKEMFGDE back to topmRNA from alignment at Scaffold_373:610212..614143- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1013_11a-0001 ID=EsuBft1013_11a-0001|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3932bp|location=Sequence derived from alignment at Scaffold_373:610212..614143- (Ectocarpus subulatus male Bft15b)
TTTACGGAAAGCGCCACGGCTCGACGTACACACACCGGTCCCGACCAGGC
GAGAGACCCGAGGACTCCCACAACAGACGTGATAAACCCACACCATGAAC
AACAACGCCGTAGCAGTGGCAGGCCGGCCATCAAGAACGAAAACGGTACC
TCTGCGACTGCAGGGTGGAGGTGAAAGTGGTGCAGCTGCTGGGCATGGTG
TTGCCCAGATCACGCCTGCTGGCGCCGTGCAGCTCCAGCCGGCACCGAGC
GGCATGGTCCGCCAGGCCGTCCACAGCAGGGTTACCCCCCATACCGATAC
ACAACAGGGGGTGCCACCTGGTGCGGGGCTGATGCCGGGCCTCATGGACA
CTGAAATTACTAAAGCTCGTCGGGTGGCCGTAAGCATGATTCTGAACGAC
AAGCAGTTTGGCGAAGCTTCAGGGAAGAATTGGAGCGAATCGGACAGCAG
CGACGACGACAACGGGAAGGACGCTCCGATGTCAAGTGGCAGCAGCAATG
TGTCGGTAGAGGAGAGTTCAGCTCCGTCGGACATAGGCTCACAGGAGCCT
GGAGATGTCGAGTCCGGAGATAGCGTGTTCGCAAAGGAAATACGGGAAGC
AATATTCGGGGGAGGGGGAGCGGGCAGAAAAAAAAACCATGGCAAGCGGA
AGGCGAGCGCCGGCGGCAGCGCCGTAGGGAACAGGAACTCAACAAAGGCA
AGCCTAGGAGCGAGTGCCAAGAAAGCCCGGGGCAAGGACTACCCGCTCTG
GGCCGCACATCTGCTGAGGAGGACATGCGCGCACCGCAAGATCCCGAGGA
TGTCGAAGGAGGGCGACAAGCATGTCCTGGTGCAGGCCCTGCGATCTCAC
GACGGCAACATGAACCGGCCATCTCCGTACTATGACGACCTCAATGCTAT
CACAGCCGGTGAGATGCTGGTATTGTGTAGATTCGTCGTCGATGAGAGTC
ACAGCAGACGGCACAGAGTTTTGAGTAAAATTATAGGTAAGTATGCTGCA
GTTGAACGCAGTGTGCGTTAAGGTTACAAAACAAAATTACTGCTTTGTGT
TTATGTAGAATGCCCGCTTCAAATCGACCTGTTCGTACAGTAGAAGGTAC
GGCATGCTCGAGAGCTGTTTTATTTGCCTCAGTAAGTGGGAAAATAAAGG
CACGCACAGCGTACTACCAGGCATGCTTTGTTGACGACAACCGGTGGTGC
ACGGACCTAAACGCTTAAGCTTTGTGTGTTCTGTCCTCTCACGCTCAGAG
GAATGTCTAGAGTTGAACGATTTTTTGTGGAATACAGCATGAGGAATATG
GAGTTTTGCTCCGGTTGGGGGTGTACACCCGAGGCGTCCTCTCATGCGAA
GGCTTATTCGTTGTGTGGGCCGCTTTCTCCTATCCCCAATGCTCGCGCAG
GCAAATCTGGACGCAGCAACGGGGAGGAGGACGAGGAGGAGGGAGCCATC
CCTGCCAAAGCACTCCTTACGTTTCGAAATGTTGTCGGGATGGTCGCCAT
AGCACGTGACAGTAAAGTGCCGTTTAAAGTCGATAATGTGGAGTACAGTG
CGGTGGACCTTTACGACGCCCTGGCCAAGGAAGACGAAGCGGGAACGGGG
GATTCTGCGGGCGGGAGTGCTTCCACTGGTGGTTCATCGACGGGTGGTGC
AGCCGGACCGGACGGGGATGGTTCCGTCGGAGGGAGCGGCAGCAACACGG
AGCGCAAGGGCCCACACTGCATGATGCGGCTCGTTGGGATCCTGTGCGAA
GACGCCATCCGCCCACTTCTCATAGAGAGCCGCTTGCAGGCGACCCGGCA
GGACCTGGACACGTCATCAGTCGGGCCGCGGAACGATTTGTGGACAGAGG
TCACCACGCGCTTCCGAGACCCTGACCACCAGGTACACGGTCATGGGTAG
GGGATTGATTAGGACGGATCGGCCGAGAACGTTGTACATAGACAGCAGTC
GATATGTATGTTGACACGCATGCCTTTTTTTAGTGGTCATTTTAGCCATC
GTACTCAACACCTCATGACGTCCACGGACGATCGCCATTGTTTTAGGTAA
AAACCCATGAGGTATCCACCCCCAAGAGCGGGTCAACCTGCTGTTGACGT
ACACCGGTAACTTATGGTGTTGTTGCTGACGCCGACGCCGATCATACTGC
TGTAGTTGCTTCGAAACCTTCACCTATTGGTGGAAGACTTAGAAAACGCG
CAGAAGAATTCCACAGGAGTGCATAGCCAAACAATATTACACGACAGAAA
AAAATAACACTGCAGAAGCAACGCTAAAATACAGGCCGGGATCAGGCCGA
CAGTACTAAGCTTCCCACGAGAGGTGCATTCCCCGTTCGGTATGTTGTTT
TTCTTCGTATCAAAATCGTGTTAAATTCCTCGCACGCCCGGGGGGGCGGT
ACTCTATGTAAGTTTTTTTAAAGAACACGTGTATGATCTGCGCTGCCCGC
TCCCTCGCTCTCTCGCTGTATGCATGCCCCATATATGGGTGATGTGGACG
TTTTGCAGGTGAGAAAAATCGTGGACGACGAGCAAGTGTCTCACGTCGAC
CCGAACATCATCCAGCAACCAAACATCTCCGCGGAGAAGCTTTCCAGGAT
GTGGGCTACGGCAAAGGCGAAGTGGAACCAGCCTTATGCCAACTGGAAGA
GTGAATCCGGCAACAACCAGCCATGGCTTTCATTTTGTCAAGGTAAGGGA
TGGGTGGAGTGGGGCTGGGTACAAAATAGCGTCTGTTTGCTCGAGGAACC
TTGGGCGATTTTGTGGTCGTGGCATAAATTCCGCCCATCCTCCTTCACAG
CGTGCAAGTGCTGCTACGGTCGGAGTTTTGAAGTTATACTTGGAGTTCTC
GACAGTGTTGTAAACCGTGCTCCAGGAATGACGTTGGCATTGAGGCCTGA
TGGTGTATTTTGAAGCACGACCAAAGACCATACCAATTGGTCCAAAAAAC
ACTCCCGCCCGCGCCTTGCATTTTTTTTTTGTTTTACAGGGTGCACGGAC
ACGTATGTTCTCGGTTGCGCAATCGAGAAATACCCCGAGCTGAACCAAGT
GTGCAACAATCTCCTCCCCGAGGGCGCTCAGCGAGAGGACGACGGGACCG
GAGAGGGTATTGTCTGCACAGGCGGTGCCGACCGCCGGGCTGCCGCCAAG
CGGGAGGGCGCCAGGCTCAACGAGCAGAACAGGCGGGGAAAAAAGCCAAA
AAATAAGGGGGTGGGGCAAAGCGTGGCAGAGGCTACGTCCGCTGCCATGA
AAACCGCACTCAAAGATATTGAGCCACTGCTGGAAAAGGTTGGCGGATCA
GAAAAATCAGAGTGGTACAAAAAAAAAGAGGAACACGCTTGCAAGACTGC
TGAACACGACAGCAAGGCTTCTGGCCTCGCCCTCCAGAAGGAAATGACCG
AGTCCCACGCCGAATTCTCGAAGAAAATTGTGGAGGAGGAGAAAGAAAAA
GCAGAGGGTTATCAGACGAGAGTTAGATTCCTGCGCAAAATGTTGGCCGG
CATCGAGAAGGAAATGTTTGGCGACGAATAACACCCATATGCACTCCCGG
AAGAGTGTTACCGTGCAATCGTCGAATTTTATGCATGCGTGACGGGGCGG
GGGGCGGGGGGGTAGTTTCATTTTTATCGTTGGGCATGGTTGAGTCAACG
TCTTCGTTTCGTCGCAGCATTGAGGATACGTGCGCCTCCGCATAGACGTG
TGGGTTTGGTAGGCAACAACACTTTGAGAGGATGCTTTACGGCAACAAAG
GAGTATCAACAAAATAAATATAGTGGAAGAAAGCCGAGACCGTTGTGGTT
CACGGGCAAGTTGCTGTGACTGTATTCAACGAACACGAGGATGCGTTTTT
TTATTTCTCTCCCTGCTGCAGGGCTTGCTTGCTGCGAGGGTCGTAGCCTT
CTTTTTTTTTTGGGCCAGGGGGGGGGGAGGTT back to topCoding sequence (CDS) from alignment at Scaffold_373:610212..614143- >EsuBft1013_11a-0001 ID=EsuBft1013_11a-0001|Name=EsuBft1013_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=2139bp|location=Sequence derived from alignment at Scaffold_373:610212..614143- (Ectocarpus subulatus male Bft15b)
ATGAACAACAACGCCGTAGCAGTGGCAGGCCGGCCATCAAGAACGAAAAC
GGTACCTCTGCGACTGCAGGGTGGAGGTGAAAGTGGTGCAGCTGCTGGGC
ATGGTGTTGCCCAGATCACGCCTGCTGGCGCCGTGCAGCTCCAGCCGGCA
CCGAGCGGCATGGTCCGCCAGGCCGTCCACAGCAGGGTTACCCCCCATAC
CGATACACAACAGGGGGTGCCACCTGGTGCGGGGCTGATGCCGGGCCTCA
TGGACACTGAAATTACTAAAGCTCGTCGGGTGGCCGTAAGCATGATTCTG
AACGACAAGCAGTTTGGCGAAGCTTCAGGGAAGAATTGGAGCGAATCGGA
CAGCAGCGACGACGACAACGGGAAGGACGCTCCGATGTCAAGTGGCAGCA
GCAATGTGTCGGTAGAGGAGAGTTCAGCTCCGTCGGACATAGGCTCACAG
GAGCCTGGAGATGTCGAGTCCGGAGATAGCGTGTTCGCAAAGGAAATACG
GGAAGCAATATTCGGGGGAGGGGGAGCGGGCAGAAAAAAAAACCATGGCA
AGCGGAAGGCGAGCGCCGGCGGCAGCGCCGTAGGGAACAGGAACTCAACA
AAGGCAAGCCTAGGAGCGAGTGCCAAGAAAGCCCGGGGCAAGGACTACCC
GCTCTGGGCCGCACATCTGCTGAGGAGGACATGCGCGCACCGCAAGATCC
CGAGGATGTCGAAGGAGGGCGACAAGCATGTCCTGGTGCAGGCCCTGCGA
TCTCACGACGGCAACATGAACCGGCCATCTCCGTACTATGACGACCTCAA
TGCTATCACAGCCGGTAACATGAGGAATATGGAGTTTTGCTCCGGTTGGG
GGTGTACACCCGAGGCGTCCTCTCATGCGAAGGCTTATTCGTTGTGTGGG
CCGCTTTCTCCTATCCCCAATGCTCGCGCAGGCAAATCTGGACGCAGCAA
CGGGGAGGAGGACGAGGAGGAGGGAGCCATCCCTGCCAAAGCACTCCTTA
CGTTTCGAAATGTTGTCGGGATGGTCGCCATAGCACGTGACAGTAAAGTG
CCGTTTAAAGTCGATAATGTGGAGTACAGTGCGGTGGACCTTTACGACGC
CCTGGCCAAGGAAGACGAAGCGGGAACGGGGGATTCTGCGGGCGGGAGTG
CTTCCACTGGTGGTTCATCGACGGGTGGTGCAGCCGGACCGGACGGGGAT
GGTTCCGTCGGAGGGAGCGGCAGCAACACGGAGCGCAAGGGCCCACACTG
CATGATGCGGCTCGTTGGGATCCTGTGCGAAGACGCCATCCGCCCACTTC
TCATAGAGAGCCGCTTGCAGGCGACCCGGCAGGACCTGGACACGTCATCA
GTCGGGCCGCGGAACGATTTGTGGACAGAGGTCACCACGCGCTTCCGAGA
CCCTGACCACCAGGTGAGAAAAATCGTGGACGACGAGCAAGTGTCTCACG
TCGACCCGAACATCATCCAGCAACCAAACATCTCCGCGGAGAAGCTTTCC
AGGATGTGGGCTACGGCAAAGGCGAAGTGGAACCAGCCTTATGCCAACTG
GAAGAGTGAATCCGGCAACAACCAGCCATGGCTTTCATTTTGTCAAGGGT
GCACGGACACGTATGTTCTCGGTTGCGCAATCGAGAAATACCCCGAGCTG
AACCAAGTGTGCAACAATCTCCTCCCCGAGGGCGCTCAGCGAGAGGACGA
CGGGACCGGAGAGGGTATTGTCTGCACAGGCGGTGCCGACCGCCGGGCTG
CCGCCAAGCGGGAGGGCGCCAGGCTCAACGAGCAGAACAGGCGGGGAAAA
AAGCCAAAAAATAAGGGGGTGGGGCAAAGCGTGGCAGAGGCTACGTCCGC
TGCCATGAAAACCGCACTCAAAGATATTGAGCCACTGCTGGAAAAGGTTG
GCGGATCAGAAAAATCAGAGTGGTACAAAAAAAAAGAGGAACACGCTTGC
AAGACTGCTGAACACGACAGCAAGGCTTCTGGCCTCGCCCTCCAGAAGGA
AATGACCGAGTCCCACGCCGAATTCTCGAAGAAAATTGTGGAGGAGGAGA
AAGAAAAAGCAGAGGGTTATCAGACGAGAGTTAGATTCCTGCGCAAAATG
TTGGCCGGCATCGAGAAGGAAATGTTTGGCGACGAATAA back to top
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