EsuBft457_12a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft457_12a-0001
Unique NameEsuBft457_12a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:507915..511008 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
Seed ortholog2880.D7G008
ProteomeIdEsuBft457_12
Protein domainsPTHR23115
Protein domainsIPR004160
Protein domainsG3DSA
Protein domainsIPR009001
Ownerapollo_admin@sb-roscoff.fr
Noteeukaryotic peptide chain release factor gtp-binding subunit erf3b os:mus musculus gn:gspt2 pe:1 [Automatic annotation]
Nb exon5
Max annot lvl2759|Eukaryota
Length2354
Hectar predicted targeting categoryother localisation
Evalue9.82e-44
EggNOG OGsCOG5256@1|root,KOG0459@2759|Eukaryota
Date last modified2016-06-13
Date creation2016-06-13
Preferred nameSUP35
KEGG koko:K03267
KEGG Pathwayko03015,map03015
GOsGO:0000166,GO:0000287,GO:0000288,GO:0000956,GO:0001882,GO:0001883,GO:0002181,GO:0002184,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003747,GO:0003824,GO:0003924,GO:0005085,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006415,GO:0006464,GO:0006479,GO:0006518,GO:0006725,GO:0006807,GO:0008022,GO:0008079,GO:0008135,GO:0008150,GO:0008152,GO:0008213,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0018444,GO:0019001,GO:0019003,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0022411,GO:0032259,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0034655,GO:0035639,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043412,GO:0043414,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048519,GO:0050789,GO:0051020,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:0098772,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Descriptioncytoplasmic translational termination
COG categoryJ
BRITEko00000,ko00001,ko03012,ko03019
Cross References
External references for this mRNA
DatabaseAccession
GO0005525
GO0016071
GO0006412
GO0034655
GO0016020
GO0008135
GO0008152
GO0005622
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft457_12aEsuBft457_12aEctocarpus subulatus male Bft15bgeneScaffold_373 507915..511008 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_12a-0001EsuBft457_12Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 510068..511008 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_12a-0001-exonagat-exon-95649Ectocarpus subulatus male Bft15bexonScaffold_373 507915..509530 -
EsuBft457_12a-0001-exonEsuBft457_12a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 509681..510196 -
EsuBft457_12a-0001-exonagat-exon-95646Ectocarpus subulatus male Bft15bexonScaffold_373 510402..510432 -
EsuBft457_12a-0001-exonagat-exon-95647Ectocarpus subulatus male Bft15bexonScaffold_373 510633..510664 -
EsuBft457_12a-0001-exonagat-exon-95650Ectocarpus subulatus male Bft15bexonScaffold_373 510803..510829 -
EsuBft457_12a-0001-exonagat-exon-95648Ectocarpus subulatus male Bft15bexonScaffold_373 510877..511008 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_12a-0001-exonagat-three_prime_utr-16279Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 507915..509530 -
EsuBft457_12a-0001-exonagat-three_prime_utr-16280Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 509681..510067 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft457_12a-0001-cdsEsuBft457_12a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 510068..510196 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft457_12a-0001 ID=EsuBft457_12a-0001|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2354bp|location=Sequence derived from alignment at Scaffold_373:507915..511008- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCCACTGCCACACGTGCGAGGAAGAGTGCACGGTGGTTGAGATCCT
GAGCGTGGTCGACCGCAAGACCGGGGCTAAGAAGAGGCAGCGCTTCGCTA
AGGAGGGAGCCATGGTTACGGCGAAGTTCAAGGGAGCCATGGTTACTGCC
AACTTCAAGGGAGCCATGTTCACGGCCAAGGGTAAGGTGAGGATCCTGGA
CCTCCTTTTCTATGGCAACCGGGTGGATCGCTCGATGTGCATGGAGTCCT
TCGAGGAGATGCCGCACTTGGGACGATTCACTCTGAGAACGGAGGGGAAG
ACAATCGCGATCGGGAAGATTCTCGCCGTGCAGAAGCCCGTCTCCAAGTG
ATGCGGTGGCAGCAGCAGCAGGCATGGCGTAGCACGGTGAGCTTGCTGGC
GAAAGTAAGGCTGCTGTATACAGGTTTACTAGTTGATATGATCGTTGAAG
TTCGCCGGTCTGTTCGAGTCAACAAGCCGTCAGCTGTGTGAGCTGTTGAG
CTTGGGAAACGTCGCACCACCGTTGGCAGCCAGCTGTGGGTTGGTCCCGC
CGGCCTGGTTTATTTCATCTTGCTTCACATCTCTTGATAACGCTGCTGTG
CTCTCACGAACCCACTCCAGAGGGATTCCTTGTTTCATGGGTGTTCTTGG
TTCTGCCTGAGTGAGTGAGAATCATGTGCCCGTCTGTCTGTCGTGCGTAT
GTGGCACTCTCTATCTCCGTCCAAGCATCCCGCTAGTGGGGTGGTGGCCC
TGCGATGTAGCAGGAGGTGGCAGAGGCGATTGTTTCCTGTCGGACACGCA
GCCAATGAAATGAACTTGAACGAAGTCTCCCGTGCCTCCTAGCGAGTGGT
CTGGCGAAGAGTTGTTCTGATGCCCATGAGACCAACGAGCGAATGACTGA
TGGTCAAGGCCTCGAAAGTGGCTGCTGACAGTCCGACCCACGTTTTTTCC
GTTTGCGTAAAGTGCCATGGTTCGACAAGCAATCTGAAGGATCGATCCGT
TGAGATTGGCGGACACCCATCTCGTGCGTCTGATTGGTCTCTTCGGCCAA
GGGTTGTCTTGCCCAATGAAATGTGTAATTGGCGTCGTCGCCTGACGCNG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGCAGTTGCGTGTATTTTGGGGCGAAGGAAGGTGCTCCGTTAA
CCGTCGCCATGCCCTTTGATGGCGGGGGGTAGCTACGTTGGCTGTTAGCT
GGGTGCTTATCTGTGTCTTATACTTCGGTGCGGAATGCGTCTGGCTTTGA
AAGAGGCGTTGGTGATGTAGGGGGACGTGTCCTGCTAGTATGCGGTAGAG
GACGCACCCGCCTTCTGCTCAGAAGAAACACGGTATTTTAGGGTGAGGCT
GGGCCTGTGGTTTGTGCCTGATGGGGATATGGAGTAAGTTTATGCGTTCG
TTGACGCGAGATTACCCGGCCGCATTAAGTTGCGGTGCCTCACGTCACAA
CGCATTGACACAGCTGCAGCTACTTCAGTTCTATATTTATCTCCCCCCCT
AAATACTCCGTGGGATAGTTCATTTTTGCATGAAGTGATTGCTACTTGTA
ACGTTTTTTTGTAATTTGTTGTTCCTCGTTGAATCTCATTTCGGAAAACG
CCGTTGTTTCTCCGGACTGGTGAAAGGGCAGGCCACCTTTGACTGAGTTG
GCGAGGGTTAAAGTTCGAAAAAGAATGGTAAAATGTACGTGTATGAACGA
AAGACCCTGACTCTGTCACCTGGTCAGCGTGCCCTTGTGAGCTAGGTAAC
CTCTCGGTGCGTGTTGGGCAGACTGGGGGTTGTCTTGAAGCAGCGTGTTT
TTGCCCGGCACAGCCCCGTAATTCCGCAGCAAAAAATGTCCTTGCAGTGA
ATGCCGGTGTACCACGGCTGTGGGAGCCCCGGAGGACAGGGAAGGGTGGT
TCGGAGAGACGTTTCCCGAATATTGCTCAATGTCTAGTTGCTCAACATGC
TACTCTGTAACATTCATTCAGTATTTTGTTGCAAAGCAGGGGCTCGCTCT
CTCCATAATGCTGCAAGTTGTGCTAACCAACAACTCAGTGTTTTTTGCTG
TCGTGGGCACCTCCTCGGCACCAATCAATGCAGACTTTGAAAAACAACAT
TGATTGTCAAGTATTCTTTGTTGTCGGGTCGTCCCCCGCCTGTTTTTTTT
TCGGTTGCGCGGGCGGTGTTTAACCCAATCGTTGTTTTTGCAATCTTCAT
AGCAGTAAGTTTTCGGTTACGTCCGCACCGGTCCGACTGAGCGCGGTCCC
TTTCCTTCCGTGCTCTTTGGCTAGAGTCTACACAGTCATTTTTGTGACCA
CGCA
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protein sequence of EsuBft457_12a-0001

>EsuBft457_12 ID=EsuBft457_12|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=116bp
MCHCHTCEEECTVVEILSVVDRKTGAKKRQRFAKEGAMVTAKFKGAMVTA
NFKGAMFTAKGKVRILDLLFYGNRVDRSMCMESFEEMPHLGRFTLRTEGK
TIAIGKILAVQKPVSK
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mRNA from alignment at Scaffold_373:507915..511008-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft457_12a-0001 ID=EsuBft457_12a-0001|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3094bp|location=Sequence derived from alignment at Scaffold_373:507915..511008- (Ectocarpus subulatus male Bft15b)
ATGTGCCACTGCCACACGTGCGAGGAAGAGTGCACGGTGGTTGAGATCCT
GAGCGTGGTCGACCGCAAGACCGGGGCTAAGAAGAGGCAGCGCTTCGCTA
AGGAGGGAGCCATGGTTACGGCGAAGTTCAAGGTAGGTGCTACGGTAATA
ACAACATTTCACGCTAGGGTTAGGGTCAGGGAGCCATGGTTACTGCCAAC
TTCAAGGTGAAGCAAGTGCTGCAAAGTCTAAGGTCTCCTTGTTTGAGGTG
AAGAAGGAGCTTCAAGGTGAGACAAGTGCTATTAAGTCTAAGGTCTCCTT
ATTTGAGGCGCTAAAGGAACGTTTTACCGTAGGGTTACGGTTAGGGAGCC
ATGTTCACGGCCAAGGGTAAGGTGAGGTAAGTGCTACAATAGCAACATTT
CAACTCTCACCTATTAACCTCTCACCTATGCATACTCTTGTTAGTAAGAG
TCCCTTATTTTGCCCGAGACCCGCTGCTTTTTCCCTCTTGGTGAAAACCC
ACCATGGAATATTATTGTACAAGCAAGGTTTTATGTGCAAGGGTGGGCTT
CGAGTACTTGTGCTTGGAAAGGTAAGGATCCTGGACCTCCTTTTCTATGG
CAACCGGGTTCGTCGTGTCGCTCTGTTACATATTGCTATTGGGAGTGGAG
ACACCGCGATTGTGGCGGGTGCACTCTCGCTTATTTCTTGATCAGTCCGT
TTCAATGCTGAAAGCTTGAGACACCACAGCAGCAGCAGCAGCAGCAGCGT
TGTTGCTGCGTCTCAGCTGTTGAGATGCCGAACAAGAACGCCTGCTACGT
GCGTCACGTCAGGTGGATCGCTCGATGTGCATGGAGTCCTTCGAGGAGAT
GCCGCACTTGGGACGATTCACTCTGAGAACGGAGGGGAAGACAATCGCGA
TCGGGAAGATTCTCGCCGTGCAGAAGCCCGTCTCCAAGTGATGCGGTGGC
AGCAGCAGCAGGCATGGCGTAGCACGGTGAGCTTGCTGGCGAAAGTAAGG
CTGCTGTATACAGGTTTACTAGTTGATATGATCGTTGAAGTTCGCCGGTC
TGTTCGAGTCAACAAGCCGTCAGCTGTGTGAGCTGTTGAGCTTGGGAAAC
GTCGCACCACCGTTGGCAGCCAGCTGTGGGTTGGTCCCGCCGGCCTGGTT
TATTTCATCTTGCTTCACATCTCTTGATAACGCTGCTGTGCTCTCACGAA
CCCACTCCAGAGGGATTCCTTGTTTCATGGGTGTTCTTGGTTCTGCCTGA
GTGAGTGAGAATCATGTGCCCGTCTGTCTGTCGTGCGTATGTGGCACTCT
CTATCTCCGTCCAAGCATCCCGCTAGTGGTAAGTTCTTCCTGTCTGAGTG
AGTGAGAATTCATGCGCCCTTGCTGTCTTCCGTGCGTACATGACCACGAG
CATGCCCATCCTCACTCTGTCCATGCATGCCCCTCGTTGTTTTCCCGCCG
TCTGCCTTCCTCCCTGCGCCTCGGGTAGGGGTGGTGGCCCTGCGATGTAG
CAGGAGGTGGCAGAGGCGATTGTTTCCTGTCGGACACGCAGCCAATGAAA
TGAACTTGAACGAAGTCTCCCGTGCCTCCTAGCGAGTGGTCTGGCGAAGA
GTTGTTCTGATGCCCATGAGACCAACGAGCGAATGACTGATGGTCAAGGC
CTCGAAAGTGGCTGCTGACAGTCCGACCCACGTTTTTTCCGTTTGCGTAA
AGTGCCATGGTTCGACAAGCAATCTGAAGGATCGATCCGTTGAGATTGGC
GGACACCCATCTCGTGCGTCTGATTGGTCTCTTCGGCCAAGGGTTGTCTT
GCCCAATGAAATGTGTAATTGGCGTCGTCGCCTGACGCNGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGC
AGTTGCGTGTATTTTGGGGCGAAGGAAGGTGCTCCGTTAACCGTCGCCAT
GCCCTTTGATGGCGGGGGGTAGCTACGTTGGCTGTTAGCTGGGTGCTTAT
CTGTGTCTTATACTTCGGTGCGGAATGCGTCTGGCTTTGAAAGAGGCGTT
GGTGATGTAGGGGGACGTGTCCTGCTAGTATGCGGTAGAGGACGCACCCG
CCTTCTGCTCAGAAGAAACACGGTATTTTAGGGTGAGGCTGGGCCTGTGG
TTTGTGCCTGATGGGGATATGGAGTAAGTTTATGCGTTCGTTGACGCGAG
ATTACCCGGCCGCATTAAGTTGCGGTGCCTCACGTCACAACGCATTGACA
CAGCTGCAGCTACTTCAGTTCTATATTTATCTCCCCCCCTAAATACTCCG
TGGGATAGTTCATTTTTGCATGAAGTGATTGCTACTTGTAACGTTTTTTT
GTAATTTGTTGTTCCTCGTTGAATCTCATTTCGGAAAACGCCGTTGTTTC
TCCGGACTGGTGAAAGGGCAGGCCACCTTTGACTGAGTTGGCGAGGGTTA
AAGTTCGAAAAAGAATGGTAAAATGTACGTGTATGAACGAAAGACCCTGA
CTCTGTCACCTGGTCAGCGTGCCCTTGTGAGCTAGGTAACCTCTCGGTGC
GTGTTGGGCAGACTGGGGGTTGTCTTGAAGCAGCGTGTTTTTGCCCGGCA
CAGCCCCGTAATTCCGCAGCAAAAAATGTCCTTGCAGTGAATGCCGGTGT
ACCACGGCTGTGGGAGCCCCGGAGGACAGGGAAGGGTGGTTCGGAGAGAC
GTTTCCCGAATATTGCTCAATGTCTAGTTGCTCAACATGCTACTCTGTAA
CATTCATTCAGTATTTTGTTGCAAAGCAGGGGCTCGCTCTCTCCATAATG
CTGCAAGTTGTGCTAACCAACAACTCAGTGTTTTTTGCTGTCGTGGGCAC
CTCCTCGGCACCAATCAATGCAGACTTTGAAAAACAACATTGATTGTCAA
GTATTCTTTGTTGTCGGGTCGTCCCCCGCCTGTTTTTTTTTCGGTTGCGC
GGGCGGTGTTTAACCCAATCGTTGTTTTTGCAATCTTCATAGCAGTAAGT
TTTCGGTTACGTCCGCACCGGTCCGACTGAGCGCGGTCCCTTTCCTTCCG
TGCTCTTTGGCTAGAGTCTACACAGTCATTTTTGTGACCACGCA
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Coding sequence (CDS) from alignment at Scaffold_373:507915..511008-

>EsuBft457_12a-0001 ID=EsuBft457_12a-0001|Name=EsuBft457_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=351bp|location=Sequence derived from alignment at Scaffold_373:507915..511008- (Ectocarpus subulatus male Bft15b)
ATGTGCCACTGCCACACGTGCGAGGAAGAGTGCACGGTGGTTGAGATCCT
GAGCGTGGTCGACCGCAAGACCGGGGCTAAGAAGAGGCAGCGCTTCGCTA
AGGAGGGAGCCATGGTTACGGCGAAGTTCAAGGGAGCCATGGTTACTGCC
AACTTCAAGGGAGCCATGTTCACGGCCAAGGGTAAGGTGAGGATCCTGGA
CCTCCTTTTCTATGGCAACCGGGTGGATCGCTCGATGTGCATGGAGTCCT
TCGAGGAGATGCCGCACTTGGGACGATTCACTCTGAGAACGGAGGGGAAG
ACAATCGCGATCGGGAAGATTCTCGCCGTGCAGAAGCCCGTCTCCAAGTG
A
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