EsuBft865_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	EsuBft865_7a-0001
Unique Name	EsuBft865_7a-0001
Type	mRNA
Organism	Ectocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Scaffold_373	contig	Scaffold_373:339218..339890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
OGS1.0 of Ectocarpus subulatus male Bft15b	2020-06-19

Properties


Property Name	Value
Seed ortholog	2880.D7FZZ3
ProteomeId	EsuBft865_7
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	1
Max annot lvl	2759\|Eukaryota
Length	67
Hectar predicted targeting category	signal peptide
Evalue	1.96e-19
EggNOG OGs	KOG1339@1\|root,KOG1339@2759\|Eukaryota
Date last modified	2016-06-14
Date creation	2016-06-14
KEGG ko	ko:K01379,ko:K01382
KEGG Pathway	ko04071,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04140,map04142,map04210,map04915,map05152
EC	3.4.23.34,3.4.23.5
Description	aspartic-type endopeptidase activity
COG category	M
BRITE	ko00000,ko00001,ko01000,ko01002,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft865_7a	EsuBft865_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_373 339218..339890 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft865_7a-0001-exon	EsuBft865_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_373 339218..339890 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft865_7a-0001-exon	agat-five_prime_utr-14505	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_373 339218..339509 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft865_7a-0001-cds	EsuBft865_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_373 339510..339890 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft865_7a-0001	EsuBft865_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_373 339510..339890 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_373:339218..339890+
coding sequence from alignment at Scaffold_373:339218..339890+

spliced messenger RNA

>EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=673bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CGAAACAAAGAAACAAAGCGGCGCGTCTGTTACTGTCGACGCGACGCTGC
ATGCAGTGCGGGACGTTACGGCGTTACCGCCCCGCTTCACTTGTACCTGG
CCTCTGGTCCCTTCCAAGCTGAGCGTCCAACAAGTTCGCGAGGAGCTGCT
TTAAAATCTAGCCGAGAGAGAGGTGTGTGTTTGTTTGTTCGGCCTGCTCT
TCCCTCGGGAAAGTTCCCGGAACGGAGGGTTAAGTAGACCCAACCGTGAT
CGGGCCTACCGCTGTAGCACACACACTAGGGAGCGTCACACCATGCCAGC
TCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGCGGTTGCTA
CTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTGCACATGTG
CACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCATTGCTCGA
GGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGCGACGGCCC
AGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCACGAGGCGG
GCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGATGAGGGTAT
CTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAACAGCAGGTG
AGTCGAGACAACCTGAGGACTAA

protein sequence of EsuBft865_7a-0001

>EsuBft865_7 ID=EsuBft865_7|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=126bp
MPARRPRPRPQLQEFVAVATLLGSLARFSLAERAHVHLVVAAGGETASKP
LLEDGDKMGDADKGGGATAQQQQQQQQRLFVPLTRRARAGGAVYGVDVRD
EGISRRRLELDGAGGATAGESRQPED

mRNA from alignment at Scaffold_373:339218..339890+

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=673bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)
CGAAACAAAGAAACAAAGCGGCGCGTCTGTTACTGTCGACGCGACGCTGC
ATGCAGTGCGGGACGTTACGGCGTTACCGCCCCGCTTCACTTGTACCTGG
CCTCTGGTCCCTTCCAAGCTGAGCGTCCAACAAGTTCGCGAGGAGCTGCT
TTAAAATCTAGCCGAGAGAGAGGTGTGTGTTTGTTTGTTCGGCCTGCTCT
TCCCTCGGGAAAGTTCCCGGAACGGAGGGTTAAGTAGACCCAACCGTGAT
CGGGCCTACCGCTGTAGCACACACACTAGGGAGCGTCACACCATGCCAGC
TCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGCGGTTGCTA
CTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTGCACATGTG
CACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCATTGCTCGA
GGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGCGACGGCCC
AGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCACGAGGCGG
GCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGATGAGGGTAT
CTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAACAGCAGGTG
AGTCGAGACAACCTGAGGACTAA

Coding sequence (CDS) from alignment at Scaffold_373:339218..339890+

>EsuBft865_7a-0001 ID=EsuBft865_7a-0001|Name=EsuBft865_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=381bp|location=Sequence derived from alignment at Scaffold_373:339218..339890+ (Ectocarpus subulatus male Bft15b)
ATGCCAGCTCGACGTCCGCGACCACGGCCGCAATTACAAGAGTTTGTCGC
GGTTGCTACTCTCCTGGGGTCGTTGGCACGATTCAGCCTGGCAGAGCGTG
CACATGTGCACCTCGTTGTCGCCGCGGGCGGCGAAACAGCATCGAAGCCA
TTGCTCGAGGATGGCGACAAGATGGGCGACGCTGACAAGGGCGGGGGTGC
GACGGCCCAGCAGCAGCAGCAGCAGCAGCAGAGGTTGTTTGTCCCGCTCA
CGAGGCGGGCCAGAGCGGGCGGTGCCGTGTACGGCGTGGATGTGCGCGAT
GAGGGTATCTCGCGTCGGAGACTTGAGCTTGACGGGGCTGGCGGGGCAAC
AGCAGGTGAGTCGAGACAACCTGAGGACTAA