EsuBft446_4a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameEsuBft446_4a-0001
Unique NameEsuBft446_4a-0001
TypemRNA
OrganismEctocarpus subulatus male Bft15b (Ectocarpus subulatus male Bft15b)
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Scaffold_373contigScaffold_373:250368..253912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
OGS1.0 of Ectocarpus subulatus male Bft15b2020-06-19
Properties
Property NameValue
ProteomeIdEsuBft446_4
Protein domainsIPR011051
Ownerapollo_admin@sb-roscoff.fr
Nb exon3
Length171
Hectar predicted targeting categoryother localisation
Date last modified2016-06-14
Date creation2016-06-14
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
EsuBft446_4aEsuBft446_4aEctocarpus subulatus male Bft15bgeneScaffold_373 250368..253912 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_4a-0001EsuBft446_4Ectocarpus subulatus male Bft15bpolypeptideScaffold_373 250504..253051 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_4a-0001-exonEsuBft446_4a-0001-exonEctocarpus subulatus male Bft15bexonScaffold_373 250368..250628 +
EsuBft446_4a-0001-exonagat-exon-79243Ectocarpus subulatus male Bft15bexonScaffold_373 250837..250933 +
EsuBft446_4a-0001-exonagat-exon-79242Ectocarpus subulatus male Bft15bexonScaffold_373 252560..253912 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_4a-0001-exonagat-five_prime_utr-10220Ectocarpus subulatus male Bft15bfive_prime_UTRScaffold_373 250368..250503 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_4a-0001-cdsEsuBft446_4a-0001-cdsEctocarpus subulatus male Bft15bCDSScaffold_373 250504..250628 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
EsuBft446_4a-0001-exonagat-three_prime_utr-16030Ectocarpus subulatus male Bft15bthree_prime_UTRScaffold_373 253052..253912 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>EsuBft446_4a-0001 ID=EsuBft446_4a-0001|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1711bp|location=Sequence derived from alignment at Scaffold_373:250368..253912+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCCTCTGCAGGTCTCACAGCGTAGTACTTTACGATCTCACACACTCGTGT
ATAAGCTGATAGACAGGGTTGCTGGTAGAAAGTCGCTCTGAAGCCTTTTC
ACACGGGTGGGGGGAGAGAATCAGTCTCTGAGCACAATGCCTAAGATCGC
CGGCTTCGACGGGAAGGAGGTAGAGTACGTCGAGGTCCACGATGAGCCAT
TCCACCGACGGCAGTTCAGCAACGACTATGTCTACATTTACATCGCGGGC
TTCAGGCGAGTGCCCGGCGAAACCTCGCTTTGGCATCGCCATTCCGAGAA
CACCCTGTACGTGTGCGTGGGACATGGAGCGGCGGCCCTCAACCGGCCAA
CGGACAAGGAGCCTTTCGTACACCACGCTTCGCCGGGGGACCTCTGGTGG
GCCATGAGCAAGAGCGCCCCCTACGTGCACCAGGTCTGCCTCCTTCCGGA
GAACACTCACAACTCGCACTTCTTCGCCATGGAAATCCTCAGACCGCCAC
CCACTTGCTCGAGACGCGCCCTCGACCACCGCTGCTACAGCCTCCGGGAG
GAAGACAGCCGCCCGGGGCTCGCTCGCGTCTACGACTTCAGGCTTGAGCC
CGGCGAATCTACGGGGCCTCACACGCTGGGATTCAGCGGGGTGGTGCTCT
GCCTTTCCGATGGCGGGGGGAGCCTGGAGGCCGATGGCGGCGTCTTTGCG
GGCGGAGAGCTGTCGAAGGTCGGGGGGTGGAAGTGGATCGACGGCCCTGT
CAGCGCCAACGCGCGAAATGCGGGCGGCAGTGTCTACCAGGCTTTTGTGG
TGGAGTGGCTGGGGGAAGGCCACTCGGTGGAAGGCTTGTCCAGGCTTTGA
TTGGAGCAGCATGTTTGTACCCACTACGCACGATTCTGAGGCGAGATTTT
GTTCGCGCATGGGTGTGCGTTTTCCCAGGGTCATATAGCGACGCTATGTG
TGGATGTCGCTGTTTGTGGCTAGAGGTGTGTTACTTATCATGTACTTCTG
TGCCATCGGTTCCCGTGGTGAGGGCTGCAATTTGCCGAGGTTCGGTAGTT
GTCTTTGATCGCTAGGTGATCATTGCAATGTGTGCATGGTGTCCTATCTA
CTGAAACGTGCTGTGTGTAACAAAGACGTGGACATAAAGTTCTCCTACGG
CGGCTGGATCTTCCAGCTCGTACTCTTAACACCATTGTATGGTAGGCACG
TTCAGTATCACAGATGCAAAAGCTGTATAAGAATTAGTTAGCCGGCCAAC
CACAAAAACCTTGCTTCCACACGTGCCTTGCAAGCGTAGGAAAAATTAGG
GACAGGTTAGGAAAGAATGTGAACAAGAGGGCATATCACCGACAACAACA
AGGACGGCAGGAGGGGAGGTCGCACTCAATGCATCGACACTCTCAATGTT
CTCAAAGTGCTTTGCCTCCTTTGGTTGGTAGATGTTTTAGCGTGAGAACA
TCTCATTTTAGACTTGTGTTGTTCTGTAAGTCGACTCGTGCTCCAATCCG
CCTTCTTCGGGCCGAAGCTGACTGACGCCGCCATGGCCAAACACGAACTG
GTATCACGCAGCCAGATTCTAAGATTGCCATAGATGGCAACGTGATCGTT
GTTCTGGGTAAGTCTTCTTCTGATCCGGCTTCAAGCCTTGCTTCGAACCT
TTCACAACGATGAGGCAGAAGCGAGACCCGACTGCCGGTAGGGGTCTAGG
TGACGTAGGAT
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protein sequence of EsuBft446_4a-0001

>EsuBft446_4 ID=EsuBft446_4|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=237bp
MPKIAGFDGKEVEYVEVHDEPFHRRQFSNDYVYIYIAGFRRVPGETSLWH
RHSENTLYVCVGHGAAALNRPTDKEPFVHHASPGDLWWAMSKSAPYVHQV
CLLPENTHNSHFFAMEILRPPPTCSRRALDHRCYSLREEDSRPGLARVYD
FRLEPGESTGPHTLGFSGVVLCLSDGGGSLEADGGVFAGGELSKVGGWKW
IDGPVSANARNAGGSVYQAFVVEWLGEGHSVEGLSRL
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mRNA from alignment at Scaffold_373:250368..253912+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>EsuBft446_4a-0001 ID=EsuBft446_4a-0001|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3545bp|location=Sequence derived from alignment at Scaffold_373:250368..253912+ (Ectocarpus subulatus male Bft15b)
TCCTCTGCAGGTCTCACAGCGTAGTACTTTACGATCTCACACACTCGTGT
ATAAGCTGATAGACAGGGTTGCTGGTAGAAAGTCGCTCTGAAGCCTTTTC
ACACGGGTGGGGGGAGAGAATCAGTCTCTGAGCACAATGCCTAAGATCGC
CGGCTTCGACGGGAAGGAGGTAGAGTACGTCGAGGTCCACGATGAGCCAT
TCCACCGACGGCAGTTCAGCAACGACTATGTCTACATTTACATCGCGGGC
TTCAGGCGAGTGTGGCATTCGTAACGAGTGGGGTCAAGAGACTTGACATG
CATCACGCACCGGGTCTGCTGTGCATGTCATTTTTGCTGTACTTGAGTTG
AAGTTCTCCGTGTTTCGTACGACGAGGAGAGTTCTTGTTCCGCAACGACG
CGAGTCAAGGAGGCTGTGATGTCCAAAGATAGCTCTCCCTTGCTCGCCCG
TGTTGCCTTCGCCCGACAGGCCCGGCGAAACCTCGCTTTGGCATCGCCAT
TCCGAGAACACCCTGTACGTGTGCGTGGGACATGGAGCGGCGGCCCTCAA
CCGGCCAACGGACAAGGTATAAGCTTGCCCGTTGGCACCTTCTTACCCCT
TCGTATCCGGCGTGATCGCCATGTGCATGCATGTTGCTGGAAAATGGAAA
TTCACCGACCGTGTGGTGTCCATGATGCTTGCCTCCGAACAGGGCATGAT
AGTCTGTCCTGCTGAGGTGAGGACTTGCTTGTTGAGCATCAGATCCATGC
TTTTTGGCACGGATTGTACAAGCCAACATGCAAAGTCTAGAGGACGTGCT
TATTGGATCTCAGACTTGCCACAGCAAGTGCAGTAGTCCTACATGTCCTT
GTTTTCCTGGAGTGTTGCGTGCGAAGCGAGAAGTGGCAACAACCAGAGCG
TTTACACAGCCTGTTGTGTTCAGACTGACGTCCGGAATGTATGGGACGAC
ACACACCCCACCGAGAGAGATGCTACTACTGTACTCTACGGCGCACACCG
ACGGCGAAGTCTGCTGCTGACGGGCAGGGTCTTGCAGCTTGAAGACGCGG
GGTGGATGAAGTTGCAAGATTGTGTGATACGCGGTTGGGGGAAGTGGCAC
TCAAAGGCGAGCCGTCGTCCTTGCCACTAAGTCAGTATCCTGTGTACAAC
GGTCATTTTGGAAGCCCTTCGGTTCTTCAAGGAGCACCTTTCCTCCGATC
CTTGCAAACCTCCAACATCCTACCCCATGTCTCATTACTGATTGACAGCT
CCGCTTTTGACCTGAATCCTCAATGCCCATCTCGTCAGCCGGTGATTCGT
GTTGCCTGATCTCTGCACCTGTACTCAGATTGACAACCATAGCCATGTCA
TTCTTAGAAAGCAAGTTGCCTGCGCTAATACAGCTCTAATTCATGTCAGG
GAAACCAGGTGGCTGTCAAATGTGTGTGTCGGAGACGACGACGCACGGTA
TGCAAACTGCGAAAGCCCCTATCCACACGAGGAAGTTATTCCACAGCCGG
TTTTCTTCGCAGCGACACATTGCAGCGACAAGCGACAGAGTCGAAATGAA
TCCCCCCCAGCTTCTTTTCGTGGGGCTCTTCCGTTGCTGTTCTTACCATC
GTTTTATCCAAGTTGAGCAGGGGGGGTGGAGGGGAGTTGTGGCATTGAAG
GCATTCCGTTTTTTGTTGGTGTAGTTCAAGGCGGAGAACCTACATACCAT
GTATCTACCTCATTTGTCTAGTCTATACAGAACATGCCACTTGGCATCGA
ACTTTGACGTCTTCAGGGCGGCTCTCTCGAGGCCCACCACCAAATGCACG
TTGTCACGCTTTTTCGTTGCCGCATACCATCAATTTTTACGTTTTCCCTC
AAATGCCACAACCGTCACTTCTGTTTGCCAACGGACCGTATCCCGCTGGT
TGTCGCCTCGACTTTTCTTGGCCTCTGCCTGGACCCTATCCATACAACAA
CCGTCACTTTTGTGTGCTATCGGACCCTGAACCCGCTGGTTGCCACGCCG
ACTCTCTCCCTCTTCCTGAACCTTATCCATACCGCAACCGTCACCTTTTT
TTGCCAACGGACCCTATCCCACTGGATGCCACCCCGACCCTTAGCCTCTG
CCCAAACCTTATCCATACCACAACCGTCACTTTTGTGTGCTAACAAGCCC
TTGTCCCGCTGCTCGTCGCCCCGACTGTGCCCCGCTCCGAAGGAGCCTTT
CGTACACCACGCTTCGCCGGGGGACCTCTGGTGGGCCATGAGCAAGAGCG
CCCCCTACGTGCACCAGGTCTGCCTCCTTCCGGAGAACACTCACAACTCG
CACTTCTTCGCCATGGAAATCCTCAGACCGCCACCCACTTGCTCGAGACG
CGCCCTCGACCACCGCTGCTACAGCCTCCGGGAGGAAGACAGCCGCCCGG
GGCTCGCTCGCGTCTACGACTTCAGGCTTGAGCCCGGCGAATCTACGGGG
CCTCACACGCTGGGATTCAGCGGGGTGGTGCTCTGCCTTTCCGATGGCGG
GGGGAGCCTGGAGGCCGATGGCGGCGTCTTTGCGGGCGGAGAGCTGTCGA
AGGTCGGGGGGTGGAAGTGGATCGACGGCCCTGTCAGCGCCAACGCGCGA
AATGCGGGCGGCAGTGTCTACCAGGCTTTTGTGGTGGAGTGGCTGGGGGA
AGGCCACTCGGTGGAAGGCTTGTCCAGGCTTTGATTGGAGCAGCATGTTT
GTACCCACTACGCACGATTCTGAGGCGAGATTTTGTTCGCGCATGGGTGT
GCGTTTTCCCAGGGTCATATAGCGACGCTATGTGTGGATGTCGCTGTTTG
TGGCTAGAGGTGTGTTACTTATCATGTACTTCTGTGCCATCGGTTCCCGT
GGTGAGGGCTGCAATTTGCCGAGGTTCGGTAGTTGTCTTTGATCGCTAGG
TGATCATTGCAATGTGTGCATGGTGTCCTATCTACTGAAACGTGCTGTGT
GTAACAAAGACGTGGACATAAAGTTCTCCTACGGCGGCTGGATCTTCCAG
CTCGTACTCTTAACACCATTGTATGGTAGGCACGTTCAGTATCACAGATG
CAAAAGCTGTATAAGAATTAGTTAGCCGGCCAACCACAAAAACCTTGCTT
CCACACGTGCCTTGCAAGCGTAGGAAAAATTAGGGACAGGTTAGGAAAGA
ATGTGAACAAGAGGGCATATCACCGACAACAACAAGGACGGCAGGAGGGG
AGGTCGCACTCAATGCATCGACACTCTCAATGTTCTCAAAGTGCTTTGCC
TCCTTTGGTTGGTAGATGTTTTAGCGTGAGAACATCTCATTTTAGACTTG
TGTTGTTCTGTAAGTCGACTCGTGCTCCAATCCGCCTTCTTCGGGCCGAA
GCTGACTGACGCCGCCATGGCCAAACACGAACTGGTATCACGCAGCCAGA
TTCTAAGATTGCCATAGATGGCAACGTGATCGTTGTTCTGGGTAAGTCTT
CTTCTGATCCGGCTTCAAGCCTTGCTTCGAACCTTTCACAACGATGAGGC
AGAAGCGAGACCCGACTGCCGGTAGGGGTCTAGGTGACGTAGGAT
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Coding sequence (CDS) from alignment at Scaffold_373:250368..253912+

>EsuBft446_4a-0001 ID=EsuBft446_4a-0001|Name=EsuBft446_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=714bp|location=Sequence derived from alignment at Scaffold_373:250368..253912+ (Ectocarpus subulatus male Bft15b)
ATGCCTAAGATCGCCGGCTTCGACGGGAAGGAGGTAGAGTACGTCGAGGT
CCACGATGAGCCATTCCACCGACGGCAGTTCAGCAACGACTATGTCTACA
TTTACATCGCGGGCTTCAGGCGAGTGCCCGGCGAAACCTCGCTTTGGCAT
CGCCATTCCGAGAACACCCTGTACGTGTGCGTGGGACATGGAGCGGCGGC
CCTCAACCGGCCAACGGACAAGGAGCCTTTCGTACACCACGCTTCGCCGG
GGGACCTCTGGTGGGCCATGAGCAAGAGCGCCCCCTACGTGCACCAGGTC
TGCCTCCTTCCGGAGAACACTCACAACTCGCACTTCTTCGCCATGGAAAT
CCTCAGACCGCCACCCACTTGCTCGAGACGCGCCCTCGACCACCGCTGCT
ACAGCCTCCGGGAGGAAGACAGCCGCCCGGGGCTCGCTCGCGTCTACGAC
TTCAGGCTTGAGCCCGGCGAATCTACGGGGCCTCACACGCTGGGATTCAG
CGGGGTGGTGCTCTGCCTTTCCGATGGCGGGGGGAGCCTGGAGGCCGATG
GCGGCGTCTTTGCGGGCGGAGAGCTGTCGAAGGTCGGGGGGTGGAAGTGG
ATCGACGGCCCTGTCAGCGCCAACGCGCGAAATGCGGGCGGCAGTGTCTA
CCAGGCTTTTGTGGTGGAGTGGCTGGGGGAAGGCCACTCGGTGGAAGGCT
TGTCCAGGCTTTGA
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