Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7FZX8 |
| ProteomeId | EsuBft446_12 |
| Protein domains | NON_CYTOPLASMIC_DOMAIN |
| Protein domains | IPR001813 |
| Protein domains | SignalP-noTM |
| Protein domains | SIGNAL_PEPTIDE |
| Protein domains | SIGNAL_PEPTIDE_C_REGION |
| Protein domains | PTHR21141 |
| Protein domains | SIGNAL_PEPTIDE_N_REGION |
| Protein domains | SIGNAL_PEPTIDE_H_REGION |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | 60s acidic ribosomal protein p1 os:zea mays gn:rpp1a pe:1 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 2759|Eukaryota |
| Length | 391 |
| Hectar predicted targeting category | signal peptide |
| Evalue | 3.74e-31 |
| EggNOG OGs | 2D6V1@1|root,2S57R@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K02942 |
| KEGG Pathway | ko03010,map03010 |
| KEGG Module | M00177 |
| BRITE | br01610,ko00000,ko00001,ko00002,ko03011 |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006414 |
| GO | 0003735 |
| GO | 0005840 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft446_12a-0001 ID=EsuBft446_12a-0001|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=391bp|location=Sequence derived from alignment at Scaffold_373:116854..119665- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
CGGGTGTTCTCCTGTCCCTTTCGTCAGCTTGATCATGTCTCTCTCGGAGC
TCCCAGCACCCCAGAAGAACGACATGGTCGTTAGCCTCGCCGCCCTCCTC
CTGGAGGACGCTGGCTCCGTGCTTACCGCCGAGAACATCAGCGCGGTGGT
GGCGGCCACGAAGAACGAGGTGCCGGCCTACTACCCCACCCTCTTCGCGG
CCATGCTTGAAAAATCCGAGGGCTGCGCGATGTTCTGCAAGATGAGCGCG
GGCGGCGGCGGTGGTGGGGGCGGCGGCGGCGGCGGCGGCGGCGCGGCGGC
ACCGGCTGCCGAGGAGAAGAAGGTAGAGGAGGAGGAAGAGGAGGAGATCG
ACATGGGCGGGGGCATGGACATGTTCGGCGGCGGTGAGTGA back to topprotein sequence of EsuBft446_12a-0001 >EsuBft446_12 ID=EsuBft446_12|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=105bp
MVVSLAALLLEDAGSVLTAENISAVVAATKNEVPAYYPTLFAAMLEKSEG
CAMFCKMSAGGGGGGGGGGGGGGAAAPAAEEKKVEEEEEEEIDMGGGMDM
FGGGE back to topmRNA from alignment at Scaffold_373:116854..119665- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft446_12a-0001 ID=EsuBft446_12a-0001|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2812bp|location=Sequence derived from alignment at Scaffold_373:116854..119665- (Ectocarpus subulatus male Bft15b)
CGGGTGTTCTCCTGTCCCTTTCGTCAGGTGAGATGCCGAATGGCTTTGAC
GACGCGGAGAGGCGCTGCTGTAGTGTTTCTCTCCCAGTGTGGATGTTGGA
TCTGATGGTCTAAGTTGTGCGGGGAGCTCAATGTATTGTGTTGCTCGAAC
TCGCCACCCTGAGATATGGCCACGGCTTGGCGGCGAGGTGCTGCTGCTGT
GCTGTGCTGCTATGCTGCAGAGTGATCAGCCTTGTTCCACCTCTTCGTTG
CTCACCCACATTGTTCTGTGCTCTGCCACAGGCTGGATTGAGATGTTCGA
GGGTGTAAGGTGTTTTTTGGAATTGGTGCCTTGGTTTCCGTGCGGACAGC
TAGCGCTGTGGAGGGGATGTATGGCCTACAAGGGTACACACACATGAATG
ATGGTTCACCACATGGCGGGTCATGGTATTTAGTTGCGCTGAGACTGTCT
GGCTAGGGCCAAGTACAACTGCTGGCGGTGAGGTCCAACGCTTGGACCGT
TTCAGACCGTTTTGCAGCTGTGTAGAAAACCCGAAGCGGACCGTGTCGCC
TTTGCAGCGAGCGCGTCGGACAAGCCAGCCCAAACAGTTTGTACTCGTCC
AGGTAGGCAGTAAGCAACAATCGTCCCTCGTTCGGAGGACAGCAGTGCCG
TATAGGTGTGTGGACTATCCGCGACCTTCTGCTCTCTGGTGTGGAAGTAT
GGGATATCCATCAACCGGCAAATGACCTTGGTGCCTTTCCCTTTTCCAGC
AGCTTGATCATGTCTCTCTCGGAGCTCCCAGCACCCCAGAAGAACGACAT
GGTCGTTAGCCTCGCCGCCCTCCTCCTGGAGGACGCTGGTGAGTCTTGCA
TAACTCTTTCCTCTTTCCAGTCGCAGCAGCGGCTGGAAACAAGACAATGC
TTGCACTCTAAATGCAGGTTGCTGAAAGATGCCAGGACACGAGTTTTTCA
AGCTCGATTTCTCCACAATGAAGAATGTGTGCAGTTCAATGATTCACTGA
CGAGTGTCGTTTTCGGCGGTAAATACCTGTTTTTGCTGCGGAGTGTTCGA
GCTCTGAAAACCGGTCCAGGGTGTGTGGTGTGTGGTATCTTGCGTCATGC
AACCTGCGGTAGGCAGCTATGTAGTTGCGGAGAAACTTTCATTCAACAGA
AAACATGCGTTTTTCGTCTGGGGGCGTACGGCGCTACACTTCGCTACTTG
GAGAGCAGCTCGGCGCTTCTTTTGGCCGAATGCACAGTAGTTGGATGGCT
TAGTGGCGCTTCTACTTGCCAGGTGTTTGCCAGTCCACGAAGAAAAGGGC
GCAAACTTATCTCACCCCCTTGCCGACGTGTTCCTCCCTGGCAATCATCA
GCTTGTTGCTTTGGAAAACCGCGCTCATGCCGCGGCACAATGTTCGACGG
AAACCGCTCTCATGCCGCGGCAACCTTTCTCACGTCTGTAGATATGCCTA
CGTCGAGAGCATGTTGTATCGACGCGCTTGGTTGCTACATGTTGTCGGCG
GTGCAGCCCCGTGCCACCATCCTGTCGGTGCTGCTTGTGTACATTGCAAG
TGCGGCGTAGGTGAGGTTGCAAAGAAACGGGAAGCCGCGTGTCGCGGGCT
ATGCAGCTAAATAGCACATGAGCACGCCTCGTGAATCGCATGCGCGTGGT
ACCCTTGGCTCTCGTTGTTTCGTGTGAGTCCCTCTGGTGACGGTTCATAT
TTGCCACCATGACAACAGTCGTCAGTATTGTTGGCAACACGCACGCCTGC
CATTGTAAGAGAAATGCAGAACGTCTCCTCCGAAAGAACATTGCCGAGAT
CCCTCCCGACCCACCGATGGTTTCTCACCCACCACACGTCTTTCTGCTCT
TGTCCCTCGTTGCTATTCGCTATCGACCGCATCCCTCATGGCAGGCTCCG
TGCTTACCGCCGAGAACATCAGCGCGGTGGTGGCGGCCACGAAGAACGAG
GTGCCGGCCTACTACCCCACCCTCTTCGCGGCCATGCTTGAAAAATCCGA
GGGCTGCGCGATGTTCTGCAAGATGAGCGCGGGCGGTGAGCCGTTTTTTT
TTTGTGTTCCTTGGTCCAGCAGGCAACACGGGACCCTTGATTGGTTGGAA
CGTGCGCCGGCGGCGTGCTTTTCATTTCGTTTTTACTGCTGCTTGATCAG
TCCAAACGATGCAACAGGAAGCGTGGCGCAGCTCGGCGTAAATCGGTTTC
ATTGCTGCTCAGGCAGTCCAGACGGCAAAGCATACAGTCATGGCTTTTGG
TATATATCGTAGATGCCCGACGTGGGGGGTTGCTGATGGCGTGTCGGCCT
TGCTTGCAGGAAGAAGCGTCGCTACCGCTGCTTGCATAAAAATCGGGGAT
CGAGCGGGCTTGTTGACACCGGCCGTGTGTGTTATCTACTTGAGGGATCA
GCAAGTACCAATTTTTGCGTAAAGAGATACCTAGCTCGGATGCTCAGAAT
TTCGAGAATCCACGCGGGTCCAACCTGTTGGAAGTTGTGCAGAAAATATT
GACACCGTGCGTGCAACAGCAACGACACAGCGCGACTATACGCTAGTGTG
TCGAAACGGACACATGCTTGCAAGCACTCACGTTCATTTCTGGACATTTT
CGTTTCGGCCCAACATCATCCTACGGAACATTTAAATTTCGCTGCCGTGC
AAACCTGCAACTTGGTTTTCTGTAGGCGGCGGTGGTGGGGGCGGCGGCGG
CGGCGGCGGCGGCGCGGCGGCACCGGCTGCCGAGGAGAAGAAGGTAGAGG
AGGAGGAAGAGGAGGAGATCGACATGGGCGGGGGCATGGACATGTTCGGC
GGCGGTGAGTGA back to topCoding sequence (CDS) from alignment at Scaffold_373:116854..119665- >EsuBft446_12a-0001 ID=EsuBft446_12a-0001|Name=EsuBft446_12a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=318bp|location=Sequence derived from alignment at Scaffold_373:116854..119665- (Ectocarpus subulatus male Bft15b)
ATGGTCGTTAGCCTCGCCGCCCTCCTCCTGGAGGACGCTGGCTCCGTGCT
TACCGCCGAGAACATCAGCGCGGTGGTGGCGGCCACGAAGAACGAGGTGC
CGGCCTACTACCCCACCCTCTTCGCGGCCATGCTTGAAAAATCCGAGGGC
TGCGCGATGTTCTGCAAGATGAGCGCGGGCGGCGGCGGTGGTGGGGGCGG
CGGCGGCGGCGGCGGCGGCGCGGCGGCACCGGCTGCCGAGGAGAAGAAGG
TAGAGGAGGAGGAAGAGGAGGAGATCGACATGGGCGGGGGCATGGACATG
TTCGGCGGCGGTGAGTGA back to top
|