Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D7G1R9 |
| ProteomeId | EsuBft3820_2 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 2 |
| Max annot lvl | 2759|Eukaryota |
| Length | 223 |
| Hectar predicted targeting category | other localisation |
| Evalue | 6.83e-36 |
| EggNOG OGs | 2AISC@1|root,2RZ5E@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | TRAF-type zinc finger |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft3820_2a-0001 ID=EsuBft3820_2a-0001|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2239bp|location=Sequence derived from alignment at Scaffold_373:63488..66042- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGAGATCGGACAACAACTGTGAGTACCCGAAGCCAGGAGCAACGAACTT
GCTCCCTCCCTCTTTTATTTCTCTGTTCCTCCATAACAATGGTCGACTCC
ACCGGCAAGTTGTCTCGTGTGAACCAGGATGCGGTGAAACTTTGCTGGAA
CGGGATGCAAAAGCGCACGCGGCATACCGACGTGTTTTGCGTGTCGTGAC
GTGTTGGATGGCTGCATGCGGGAAGCGCATGCCGGCGAAGGGTGTTTCAA
GGCATCTAGACGAAGACTGCGTCGCGCACCGAGCCTGGATGCGCATGGCT
GAAGCCGGACACGAACTCCAAGAGAGTTGCACGTGCCCTCACTGCGGGGA
AACTGTGCGGCGCTCCCAGCTGACGCTACACTTCCAGTACCAGTGTCATT
GGTTCAAGGAGCAGCGCCGCAAAGCCGGTTGCGGTGCCTGGGTTCCGCGG
CAATGTCGAGCAGAACAGTAGGGACGATTTTGCCGGGATTCGAGCGCGGT
TCGCAGACGCCGGCGTCTGGCGAGGGCCAGGGCCTGTTTGTGTACCCCCG
TGACCACCCACGGAGGTTGCCGTGCCCACCCACGGTACGATGTCTGTATG
GGGACCATGTTAACCCAGAGGACCGATGCAGACGATATATATATCCTTGA
TTAACACACACGTGCTGTTCCAGCACGGACCGAAGTCAGTACAGGTCCTG
TTTCAGTGAACACAAGCGCGGGCTCTCACGAGGGGGACCGCACTTGGACC
CCCAACAGTATACCCCCCGCACACATGTTCTATGCAGATCGAATCTTGTA
TCCAAGTACCCCAAACAGCCCCCCTGCTTGATACAATATACGATCTGGAA
GTCCAAGGTGGATAATCTTCCTACCAATACAAAAACACAAATAACCACTC
GAGAAACATCCTCTACAAAACTGGTTACGCATTTTACGCAAAGCGTCTCC
ATCAGTATATTCATGAATCCAATGTATTCTCAAACCGTCAAAACAAAAGA
ATCATCCTCAGAAGAGTACCCAACAAATATCTGCGCTACATCAGAAAAGC
GTCAGAACGGTGACGGACAAATCTGGAAAAACAGCTTCAAAAGAGTTGAC
ACAACGTCCTCAAATAACACAAAGTTTCAAGTTCTCGACCAATCAAAACG
AGCATTCGGAAAGCACAAGGGCCCCAACCATTACTCGTCAAAACATGTCA
AACCCTTCCTCCAATGTAGCATCCAAAGACCAAACCCTTTAACAGCGTGC
ACATGCTATCGGTGCCTCAGCTGTTGTCCAAGAGACGATAGGAAACACAC
GCCAAAATCCATGCAAACAGCCCGCCTGCTGCAACATCTCCCGAAACATG
CAAATTCTGTGCCACCCGTATCTCACTGGTTTTGCCACAAGACAGCAATA
TCAATACCAATATCAACACGTAACAGCCCCCCAGCTGGAATATTTCCCCG
AAACATACAGATAAATCTGCCTGCGCTTTCTTCCCTCCCTTTCCAACCAA
CAGAGGATCTCAAAACATCAAAGCGTACGAAACAGCCCCTAAGCTGAAAC
ATGCCCTGCATACATATGAAAAACACATAGCATTCGCTAGTGTTGCGTCT
GGAATCATGGCAACATATTTCCTCCCCCCCTGATTCTTGACCCAAAACAC
AGCAGAAGGAAGAAAACGCCAAGAAAATCACGACGAAACAAATCCAACTT
GAACAGAACTCGACGAAAGCACTCTGCTCTGCTGGTACTGCGGCTAGAAA
CATGGTACACGAATCCCCCCCGCATGGTTCTTGACAGCAGCACAAACAGC
AGTTCGACATTTGTCATTGAATTTCGCATCTTACACAAATTCGGGTTCGA
AACACAACAAGTCAAAACCCAGAAACAAAAATTACTCAACCACAAACAGG
GATGCCGTACACGTTAACGCATTGTCTCTCGGATGCGATTCCTGGATGAA
TTTATCGTCTTCGGCGCAACGGGAAGAAACCCGACATGGAACAACAAAAA
ATAAAAACCACAAAGAACATAACAACGTGAAGTCAACATGCCAATACCTC
CACACAAAACCCAAACAATTCGTTAATATTTCACATGGTCTCCAATTTGG
CGCAAATATGGTGAGGTCGTTGGTGCCACCATATTCTCGCCCTGCTCGGT
CGATTCGAGGGTGTCCACCGGAGCCATATATCCGTCTTCCGCTTCGCCTT
TACTCCCCAAATTACGCTGCGCCCGCCCCGCGGTAGCTT back to topprotein sequence of EsuBft3820_2a-0001 >EsuBft3820_2 ID=EsuBft3820_2|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=156bp
MRSDNNCEYPKPGATNLLPPSFISLFLHNNGRLHRQVVSCEPGCGETLLE
RDAKAHAAYRRVLRVVTCWMAACGKRMPAKGVSRHLDEDCVAHRAWMRMA
EAGHELQESCTCPHCGETVRRSQLTLHFQYQCHWFKEQRRKAGCGAWVPR
QCRAEQ back to topmRNA from alignment at Scaffold_373:63488..66042- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft3820_2a-0001 ID=EsuBft3820_2a-0001|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2555bp|location=Sequence derived from alignment at Scaffold_373:63488..66042- (Ectocarpus subulatus male Bft15b)
ATGAGATCGGACAACAACTGTGAGTACCCGAAGCCAGGAGCAACGAACTT
GCTCCCTCCCTCTTTTATTTCTCTGTTCCTCCATAACAATGGTCGACTCC
ACCGGCAAGTTGTCTCGTGTGAACCAGGATGCGGTGAAACTTTGCTGGAA
CGGGATGCAAAAGCGCACGCGGCATACCGACGTGTTTTGCGTGTCGTGAC
GTGTTGGATGGCTGCATGCGGGAAGCGCATGCCGGCGAAGGGTGTTTCAA
GGTGCAGCTGCTGATTGTAACACGCATGGGGGCATAGGATTGACTCGTGT
GAGAGGAAGCGCGTGTGACGAACAAGTAATATTTTGACCACAAATTGTGT
ATTGTGCAGAGTGGCAGTCTAGACACCCATCACCTTCACCAATCCTAATG
GTGCCTTTCCAGCCAGGAGTTTCTTGTTTTTTTCGTTTTCACGGTCGTAA
GAGGCATGGAACACGTCGTTCCCAAATCGGCCTGCCCTTATCACCTAACG
GTGAGTCGCGTCCATACTTCGAAAATAGTTGCCCCTACTCAAGGCGTCTT
CTCGTCTGCACTGGCAGGCATCTAGACGAAGACTGCGTCGCGCACCGAGC
CTGGATGCGCATGGCTGAAGCCGGACACGAACTCCAAGAGAGTTGCACGT
GCCCTCACTGCGGGGAAACTGTGCGGCGCTCCCAGCTGACGCTACACTTC
CAGTACCAGTGTCATTGGTTCAAGGAGCAGCGCCGCAAAGCCGGTTGCGG
TGCCTGGGTTCCGCGGCAATGTCGAGCAGAACAGTAGGGACGATTTTGCC
GGGATTCGAGCGCGGTTCGCAGACGCCGGCGTCTGGCGAGGGCCAGGGCC
TGTTTGTGTACCCCCGTGACCACCCACGGAGGTTGCCGTGCCCACCCACG
GTACGATGTCTGTATGGGGACCATGTTAACCCAGAGGACCGATGCAGACG
ATATATATATCCTTGATTAACACACACGTGCTGTTCCAGCACGGACCGAA
GTCAGTACAGGTCCTGTTTCAGTGAACACAAGCGCGGGCTCTCACGAGGG
GGACCGCACTTGGACCCCCAACAGTATACCCCCCGCACACATGTTCTATG
CAGATCGAATCTTGTATCCAAGTACCCCAAACAGCCCCCCTGCTTGATAC
AATATACGATCTGGAAGTCCAAGGTGGATAATCTTCCTACCAATACAAAA
ACACAAATAACCACTCGAGAAACATCCTCTACAAAACTGGTTACGCATTT
TACGCAAAGCGTCTCCATCAGTATATTCATGAATCCAATGTATTCTCAAA
CCGTCAAAACAAAAGAATCATCCTCAGAAGAGTACCCAACAAATATCTGC
GCTACATCAGAAAAGCGTCAGAACGGTGACGGACAAATCTGGAAAAACAG
CTTCAAAAGAGTTGACACAACGTCCTCAAATAACACAAAGTTTCAAGTTC
TCGACCAATCAAAACGAGCATTCGGAAAGCACAAGGGCCCCAACCATTAC
TCGTCAAAACATGTCAAACCCTTCCTCCAATGTAGCATCCAAAGACCAAA
CCCTTTAACAGCGTGCACATGCTATCGGTGCCTCAGCTGTTGTCCAAGAG
ACGATAGGAAACACACGCCAAAATCCATGCAAACAGCCCGCCTGCTGCAA
CATCTCCCGAAACATGCAAATTCTGTGCCACCCGTATCTCACTGGTTTTG
CCACAAGACAGCAATATCAATACCAATATCAACACGTAACAGCCCCCCAG
CTGGAATATTTCCCCGAAACATACAGATAAATCTGCCTGCGCTTTCTTCC
CTCCCTTTCCAACCAACAGAGGATCTCAAAACATCAAAGCGTACGAAACA
GCCCCTAAGCTGAAACATGCCCTGCATACATATGAAAAACACATAGCATT
CGCTAGTGTTGCGTCTGGAATCATGGCAACATATTTCCTCCCCCCCTGAT
TCTTGACCCAAAACACAGCAGAAGGAAGAAAACGCCAAGAAAATCACGAC
GAAACAAATCCAACTTGAACAGAACTCGACGAAAGCACTCTGCTCTGCTG
GTACTGCGGCTAGAAACATGGTACACGAATCCCCCCCGCATGGTTCTTGA
CAGCAGCACAAACAGCAGTTCGACATTTGTCATTGAATTTCGCATCTTAC
ACAAATTCGGGTTCGAAACACAACAAGTCAAAACCCAGAAACAAAAATTA
CTCAACCACAAACAGGGATGCCGTACACGTTAACGCATTGTCTCTCGGAT
GCGATTCCTGGATGAATTTATCGTCTTCGGCGCAACGGGAAGAAACCCGA
CATGGAACAACAAAAAATAAAAACCACAAAGAACATAACAACGTGAAGTC
AACATGCCAATACCTCCACACAAAACCCAAACAATTCGTTAATATTTCAC
ATGGTCTCCAATTTGGCGCAAATATGGTGAGGTCGTTGGTGCCACCATAT
TCTCGCCCTGCTCGGTCGATTCGAGGGTGTCCACCGGAGCCATATATCCG
TCTTCCGCTTCGCCTTTACTCCCCAAATTACGCTGCGCCCGCCCCGCGGT
AGCTT back to topCoding sequence (CDS) from alignment at Scaffold_373:63488..66042- >EsuBft3820_2a-0001 ID=EsuBft3820_2a-0001|Name=EsuBft3820_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=471bp|location=Sequence derived from alignment at Scaffold_373:63488..66042- (Ectocarpus subulatus male Bft15b)
ATGAGATCGGACAACAACTGTGAGTACCCGAAGCCAGGAGCAACGAACTT
GCTCCCTCCCTCTTTTATTTCTCTGTTCCTCCATAACAATGGTCGACTCC
ACCGGCAAGTTGTCTCGTGTGAACCAGGATGCGGTGAAACTTTGCTGGAA
CGGGATGCAAAAGCGCACGCGGCATACCGACGTGTTTTGCGTGTCGTGAC
GTGTTGGATGGCTGCATGCGGGAAGCGCATGCCGGCGAAGGGTGTTTCAA
GGCATCTAGACGAAGACTGCGTCGCGCACCGAGCCTGGATGCGCATGGCT
GAAGCCGGACACGAACTCCAAGAGAGTTGCACGTGCCCTCACTGCGGGGA
AACTGTGCGGCGCTCCCAGCTGACGCTACACTTCCAGTACCAGTGTCATT
GGTTCAAGGAGCAGCGCCGCAAAGCCGGTTGCGGTGCCTGGGTTCCGCGG
CAATGTCGAGCAGAACAGTAG back to top
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