Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 67593.Physo109618 |
| ProteomeId | EsuBft2609_4 |
| Protein domains | IPR013103 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 67593.Physo109618|- |
| Length | 350 |
| Evalue | 1.03e-15 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHRW@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | transposition, RNA-mediated |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2609_4a-0001 ID=EsuBft2609_4a-0001|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=350bp|location=Sequence derived from alignment at Scaffold_373:56018..56367- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
AAAAAGAAGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCC
GGCAAGGTGGTAAAGGTTGAGCGTGCCCTGTACGGCCCAAAGCAGAGTGG
CCGTGAGTGGGAGTTTGAAGCTGCCGATGCCCTCATCGAGAACGGATACG
AGAAGTACAGGGTTGACCCGTGTGTCGTCCGGAAGGTGGTGGATGGAAAG
GTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGCGGCAGA
CGAGGGAGAGCGAGAGGAGTTGTTCGCTTCTCTCAACAAGAAGTTTCCGG
TGAAAGATCTGGGGGAGTGTACCTGGTACNNNNNNNNNNNNAGGTCGTAG back to topprotein sequence of EsuBft2609_4a-0001 >EsuBft2609_4 ID=EsuBft2609_4|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=101bp
MSGKVVKVERALYGPKQSGREWEFEAADALIENGYEKYRVDPCVVRKVVD
GKVVGLIVIYVDDILVAADEGEREELFASLNKKFPVKDLGECTWYXXXXR
S back to topmRNA from alignment at Scaffold_373:56018..56367- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2609_4a-0001 ID=EsuBft2609_4a-0001|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=350bp|location=Sequence derived from alignment at Scaffold_373:56018..56367- (Ectocarpus subulatus male Bft15b)
AAAAAGAAGAAATATACCTCAGGTTCCCGGAAGGCTGTGGTAGCATGTCC
GGCAAGGTGGTAAAGGTTGAGCGTGCCCTGTACGGCCCAAAGCAGAGTGG
CCGTGAGTGGGAGTTTGAAGCTGCCGATGCCCTCATCGAGAACGGATACG
AGAAGTACAGGGTTGACCCGTGTGTCGTCCGGAAGGTGGTGGATGGAAAG
GTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGCGGCAGA
CGAGGGAGAGCGAGAGGAGTTGTTCGCTTCTCTCAACAAGAAGTTTCCGG
TGAAAGATCTGGGGGAGTGTACCTGGTACNNNNNNNNNNNNAGGTCGTAG
back to topCoding sequence (CDS) from alignment at Scaffold_373:56018..56367- >EsuBft2609_4a-0001 ID=EsuBft2609_4a-0001|Name=EsuBft2609_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=306bp|location=Sequence derived from alignment at Scaffold_373:56018..56367- (Ectocarpus subulatus male Bft15b)
ATGTCCGGCAAGGTGGTAAAGGTTGAGCGTGCCCTGTACGGCCCAAAGCA
GAGTGGCCGTGAGTGGGAGTTTGAAGCTGCCGATGCCCTCATCGAGAACG
GATACGAGAAGTACAGGGTTGACCCGTGTGTCGTCCGGAAGGTGGTGGAT
GGAAAGGTCGTAGGTCTCATCGTGATCTACGTTGATGACATCTTAGTGGC
GGCAGACGAGGGAGAGCGAGAGGAGTTGTTCGCTTCTCTCAACAAGAAGT
TTCCGGTGAAAGATCTGGGGGAGTGTACCTGGTACNNNNNNNNNNNNAGG
TCGTAG back to top
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