Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 164328.Phyra87462 |
| ProteomeId | EsuBft2609_5 |
| Protein domains | IPR013103 |
| Protein domains | SSF56672 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 3 |
| Max annot lvl | 164328.Phyra87462|- |
| Length | 2029 |
| Evalue | 7.12e-20 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,3QHJF@4776|Peronosporales |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | gag-polypeptide of LTR copia-type |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0006259 |
| GO | 0003676 |
| GO | 0005515 |
| EC | 3.1 |
| GO | 0016779 |
| GO | 0004518 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft2609_5a-0001 ID=EsuBft2609_5a-0001|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2029bp|location=Sequence derived from alignment at Scaffold_373:48735..52707- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCCCGCCTGCGGGAAGAGGGGCTCAATGCTGAACAACCCTTCGTTCTC
GCCCACTTCGTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCT
GTTGGAGACAGCAACGGCGCTGGATAGGGCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCGACCGAAGAGGC
GGTGCTCGTGGTGGAAGTGCCGGCGGGGAGGGCGTCTGCGGACGCCACAG
CACTGGACGTGGCAGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAG
TGTCACAAAGTCGTTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAG
CACGGAGGAGGTCACCCGCTGGAAGCTTTCGGCGGTACTCCACGTGGTGG
AGGGGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTCCGAGCGCGCGGAG
GAGGTCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTGCTGGGTACGGT
GGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCC
ACGAGCTAAGTGAATCCCCCATAGGCCTGCGTCCGAGTGATGTAGAAGCC
CCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGAGGGGTG
GGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGT
TTTCATTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGGCATGAACCTC
AATCCCTGGGATGTGAAGCAGGCGTATACACACGCCACACTAGGCAAGGA
GGTTTTTCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTG
CTAAGGCTGAGCGTGCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGG
GGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAATGCAA
GGCGGACCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGA
TTATCGTGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGAT
TGCGAGGAGTTGCTTGCTTCTCTCAACAAGAAATTTCCCACCAAAAACCT
TGGAGAGTGTCAATGGTTTGATGGGTGTGCCATCGAGAGAGATGTAGATG
CTGGGACTGTGAGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG
CGGCTGCTGCTGAAATCCACCAGTGCTGCCATACACCACGCCTGGCTTCT
GCTGCTGTTGCTGCTGCTGCTGCTGGAACACNATCTAGGGCCGAAGCGAG
AGGATGAGGAGGGAGGGGAGTGGCCGGTGAGGAAGGCCATCGGCAGTATG
ATGTGGGTGTCGACGCTTTTACCGGCAAAGATGTTGCAAACGAACCGGCA
GCAGCCCCCCCCCCCGTCTCGCCAACAAACACCCCACCACTCACCTGTCC
AACCACACCACGGGTGGAGCCGGCCGCCAGCTGTTGTTGCCGCGGCTGCT
GCTGAAATCCACCAGTGCTGCCATACACCACGCCTGGCTTCTGCTGCTGT
TGCTGCTGCTGCTGCTGGAACACGACCCGCCGCCAAAGCCACCGTTCCTC
CGCTGCTGAAACGGTCCGCGGGCGAGGTTGAACTTGCAATACTGATGTAC
ATGACCTTTCTCTCCACAGCAGCTGCATTGGTGCTGCTGCTCGGGAGGGG
GAGCAGCGGGAGGGCGTGGGCGTTCGTTGGGCACCAGCTACTGCTCATGC
TGGTACCGGCTGTGCCCTGTAAGGATGTGGTTGTGGCGGCTGCTCTGCTG
CTGCACTCCTCTCGTCACCTGCTGCTGGT back to topprotein sequence of EsuBft2609_5a-0001 >EsuBft2609_5 ID=EsuBft2609_5|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=390bp
MPACGKRGSMLNNPSFSPTSLVPSHPSTNKRSSCWRQQRRWIGPXXXXXX
XXXXXXXXXXXCPTEEAVLVVEVPAGRASADATALDVAEEALVVGDISGE
CHKVVGRGGVEQARRGSTEEVTRWKLSAVLHVVEGLEARVVRELLSERAE
EVHAARQEAEDFLLGTVDLMLNSPDAFETALASHELSESPIGLRPSDVEA
PPMTVAGVAKSVYREGWEQAMREEFEGHLGTGTFSFVDGAPEGRRPGMNL
NPWDVKQAYTHATLGKEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQW
GYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDED
CEELLASLNKKFPTKNLGECQWFDGCAIERDVDAGTVRIX back to topmRNA from alignment at Scaffold_373:48735..52707- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft2609_5a-0001 ID=EsuBft2609_5a-0001|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3973bp|location=Sequence derived from alignment at Scaffold_373:48735..52707- (Ectocarpus subulatus male Bft15b)
ATGCCCGCCTGCGGGAAGAGGGGCTCAATGCTGAACAACCCTTCGTTCTC
GCCCACTTCGTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCT
GTTGGAGACAGCAACGGCGCTGGATAGGGCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCGACCGAAGAGGC
GGTGCTCGTGGTGGAAGTGCCGGCGGGGAGGGCGTCTGCGGACGCCACAG
CACTGGACGTGGCAGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAG
TGTCACAAAGTCGTTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAG
GTATGTCGCGGATACCGGCGCTACTACCCACATGTTCGCGAACTCAGGTG
GGTTCGTTCATTACGAAGAGTGTGATCGACGTGTGCGCGTCGCCGCCGGA
GAAACCTTCCCTATCGTAGGGTATGGCGACGTGACGGTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCGTCGCCGACA
AGTGCCGAAGCCCTGCTCGCCTCGGTGGCGAGCCTGCCCGTCAGCAGCAC
GGAGGAGGTCACCCGCTGGAAGCTTTCGGCGGTACTCCACGTGGTGGAGG
GGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTCCGAGCGCGCGGAGGAG
GTCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTGCTGGGTACGGTGGA
CCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCCACG
AGCTAAGTGAATCCCCCATAGGCCTGCGTCCGAGTGATGTAGAAGCCCCA
CCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGAGGGGTGGGA
ACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGTTTT
CATTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGTGAGCTCAAAGTGG
TGTTTTAGTTGGAAGACCAACCAGGAAGGGAAGATAGTTCAAAGCGCGTC
TGGTTGCTAGGGGGTTTTCGCAAATCCCGAACACCGATTATTTCCATTCG
TCTTCCCCTTGCCCCTCATCCGCATCCATAGAGCTGATGCTTGCGGTAGC
AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGGCATGAACCTCAATCCC
TGGGATGTGAAGCAGGCGTATACACACGCCACACTAGGCAAGGAGGTTTT
TCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTGCTAAGG
CTGAGCGTGCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGGGGGTAC
CACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAATGCAAGGCGGA
CCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGATTATCG
TGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGATTGCGAG
GAGTTGCTTGCTTCTCTCAACAAGAAATTTCCCACCAAAAACCTTGGAGA
GTGTCAATGGTTTGATGGGTGTGCCATCGAGAGAGATGTAGATGCTGGGA
CTGTGAGAATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGCTG
CTGCTGAAATCCACCAGTGCTGCCATACACCACGCCTGGCTTCTGCTGCT
GTTGCTGCTGCTGCTGCTGGAACACNATCTAGGGCCGAAGCGAGAGGATG
AGGAGGGAGGGGAGTGGCCGGTGAGGAAGGCCATCGGCAGTATGATGTGG
GTGTCGACGCTTTTACCGGCAAAGATGTTGCAAACGAACCGGCAGCAGCC
CCCCCCCCCGTCTCGCCAACAAACACCCCACCACTCACCTGTCCAACCAC
ACCACGGGTGGAGCCGGCCGCCAGCTGTTGTTGCCGCGGCTGCTGCTGAA
ATCCACCAGTGCTGCCATACACCACGCCTGGCTTCTGCTGCTGTTGCTGC
TGCTGCTGCTGGAACACGACCCGCCGCCAAAGCCACCGTTCCTCCGCTGC
TGAAACGGTCCGCGGGCGAGGTTGAACTTGCAATACTGATGTACATGACC
TTTCTCTCCACAGCAGCTGCATTGGTGCTGCTGCTCGGGAGGGGGAGCAG
CGGGAGGGCGTGGGCGTTCGTTGGGCACCAGCTACTGCTCATGCTGGTAC
CGGCTGTGCCCTGTAAGGATGTGGTTGTGGCGGCTGCTCTGCTGCTGCAC
TCCTCTCGTCACCTGCTGCTGGT back to topCoding sequence (CDS) from alignment at Scaffold_373:48735..52707- >EsuBft2609_5a-0001 ID=EsuBft2609_5a-0001|Name=EsuBft2609_5a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1170bp|location=Sequence derived from alignment at Scaffold_373:48735..52707- (Ectocarpus subulatus male Bft15b)
ATGCCCGCCTGCGGGAAGAGGGGCTCAATGCTGAACAACCCTTCGTTCTC
GCCCACTTCGTTGGTTCCCTCCCACCCGAGTACCAACAAGCGAAGTTCCT
GTTGGAGACAGCAACGGCGCTGGATAGGGCCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCCCGACCGAAGAGGC
GGTGCTCGTGGTGGAAGTGCCGGCGGGGAGGGCGTCTGCGGACGCCACAG
CACTGGACGTGGCAGAAGAAGCGCTGGTGGTCGGTGACATCTCAGGCGAG
TGTCACAAAGTCGTTGGTCGAGGGGGTGTAGAGCAGGCTAGGCGGGGTAG
CACGGAGGAGGTCACCCGCTGGAAGCTTTCGGCGGTACTCCACGTGGTGG
AGGGGCTAGAGGCGAGGGTGGTGCGAGAGTTGCTGTCCGAGCGCGCGGAG
GAGGTCCACGCTGCGCGCCAAGAGGCGGAGGATTTCCTGCTGGGTACGGT
GGACCTCATGCTCAACTCGCCAGACGCCTTCGAGACGGCTCTGGCGTCCC
ACGAGCTAAGTGAATCCCCCATAGGCCTGCGTCCGAGTGATGTAGAAGCC
CCACCCATGACTGTAGCCGGCGTTGCCAAGTCTGTTTACCGAGAGGGGTG
GGAACAGGCCATGAGGGAAGAGTTTGAAGGGCACTTGGGCACGGGGACGT
TTTCATTCGTAGACGGTGCGCCAGAGGGGCGCAGGCCTGGCATGAACCTC
AATCCCTGGGATGTGAAGCAGGCGTATACACACGCCACACTAGGCAAGGA
GGTTTTTCTGAAGCTCCCCGCTGGGTGCGGGGACAAGTCGCATAAGATTG
CTAAGGCTGAGCGTGCGATTTATGGTCTGAAGCAGAGCGGTAGGCAGTGG
GGGTACCACGCTGCTGATACGCTAGTCGAGAACGGGTTCGAGCAATGCAA
GGCGGACCCGTGTGTTTTCCGCAAGATGGTAGACGAAGTCGTGGTGATGA
TTATCGTGATTTATGTGGATGACATTTTGGTGGCTGGGTCTGACGAGGAT
TGCGAGGAGTTGCTTGCTTCTCTCAACAAGAAATTTCCCACCAAAAACCT
TGGAGAGTGTCAATGGTTTGATGGGTGTGCCATCGAGAGAGATGTAGATG
CTGGGACTGTGAGAATCTNN back to top
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