Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
ProteomeId | EsuBft1844_2 |
Protein domains | NON_CYTOPLASMIC_DOMAIN |
Protein domains | SignalP-noTM |
Protein domains | SIGNAL_PEPTIDE |
Protein domains | SignalP-TM |
Protein domains | SIGNAL_PEPTIDE_N_REGION |
Protein domains | SIGNAL_PEPTIDE_C_REGION |
Protein domains | SIGNAL_PEPTIDE_H_REGION |
Owner | apollo_admin@sb-roscoff.fr |
Nb exon | 1 |
Length | 59 |
Hectar predicted targeting category | chloroplast |
Date last modified | 2016-06-14 |
Date creation | 2016-06-14 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1844_2a-0001 ID=EsuBft1844_2a-0001|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=596bp|location=Sequence derived from alignment at Scaffold_372:464361..464956- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGCACAACAACAGCGCAGCAACTAGACCGCGTTCACCATCCACAGCAGC ACAGCAGCGAGTACACAGCTGCTGTCCTGTGTCTCGCGTGCACCGCGCAA ACTCCCTCGCATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCC GTGTGGGCACCATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCT GCGTTCAGCGTCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCT CGTGGCATGGGATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACT CCGAAGAAGAGGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATAC CCTCGTAAGGATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCT CAAGGATCTTGAGGTGGATGGAATTGTCGGCCCCACGAGCAGGCCTGCTC GCCGCTTCCGCGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTG GTGGCCCTGGTGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGC GTCCGGACGTCGGGGTATCCCCGTGCAATTAAAGGTGAACATTTAG back to topprotein sequence of EsuBft1844_2a-0001 >EsuBft1844_2 ID=EsuBft1844_2|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=161bp
MLLLGLLLVVAWVRVGTMSSSETGAVNVPAAFSVALAAFNQQQQRTLVAW DLVLDDLDELDPDSEEEEEDNREIKRRRVYPRKDYNISGWAIQLQELKDL EVDGIVGPTSRPARRFRESFRLPYPFFVELVALVKQRDWFPTGKQDASGR RGIPVQLKVNI back to topmRNA from alignment at Scaffold_372:464361..464956- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1844_2a-0001 ID=EsuBft1844_2a-0001|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=596bp|location=Sequence derived from alignment at Scaffold_372:464361..464956- (Ectocarpus subulatus male Bft15b) ATGCACAACAACAGCGCAGCAACTAGACCGCGTTCACCATCCACAGCAGC
ACAGCAGCGAGTACACAGCTGCTGTCCTGTGTCTCGCGTGCACCGCGCAA
ACTCCCTCGCATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCC
GTGTGGGCACCATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCT
GCGTTCAGCGTCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCT
CGTGGCATGGGATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACT
CCGAAGAAGAGGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATAC
CCTCGTAAGGATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCT
CAAGGATCTTGAGGTGGATGGAATTGTCGGCCCCACGAGCAGGCCTGCTC
GCCGCTTCCGCGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTG
GTGGCCCTGGTGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGC
GTCCGGACGTCGGGGTATCCCCGTGCAATTAAAGGTGAACATTTAG back to topCoding sequence (CDS) from alignment at Scaffold_372:464361..464956- >EsuBft1844_2a-0001 ID=EsuBft1844_2a-0001|Name=EsuBft1844_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=486bp|location=Sequence derived from alignment at Scaffold_372:464361..464956- (Ectocarpus subulatus male Bft15b) ATGCTGCTACTGGGCCTGTTGTTGGTGGTAGCCTGGGTCCGTGTGGGCAC CATGTCATCGTCAGAAACGGGTGCCGTCAACGTGCCTGCTGCGTTCAGCG TCGCGTTGGCGGCTTTCAATCAACAGCAGCAGCGCACGCTCGTGGCATGG GATCTTGTACTCGACGATCTAGATGAGCTCGATCCCGACTCCGAAGAAGA GGAGGAGGACAACCGTGAGATCAAGAGGCGACGCGTATACCCTCGTAAGG ATTACAATATCTCTGGCTGGGCGATTCAGCTGCAGGAGCTCAAGGATCTT GAGGTGGATGGAATTGTCGGCCCCACGAGCAGGCCTGCTCGCCGCTTCCG CGAGAGCTTTCGTCTCCCTTACCCTTTCTTCGTGGAGCTGGTGGCCCTGG TGAAGCAGAGGGATTGGTTCCCGACTGGGAAGCAAGATGCGTCCGGACGT CGGGGTATCCCCGTGCAATTAAAGGTGAACATTTAG back to top
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