EsuBft1363_3a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Properties


Property Name	Value
ProteomeId	EsuBft1363_3
Protein domains	NON_CYTOPLASMIC_DOMAIN
Protein domains	SIGNAL_PEPTIDE
Protein domains	SignalP-noTM
Protein domains	SIGNAL_PEPTIDE_N_REGION
Protein domains	SIGNAL_PEPTIDE_H_REGION
Protein domains	SIGNAL_PEPTIDE_C_REGION
Owner	apollo_admin@sb-roscoff.fr
Nb exon	4
Length	347
Hectar predicted targeting category	signal peptide
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-13_003750.1
Date last modified	2016-06-14
Date creation	2016-06-14

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_372:445469..451360-
coding sequence from alignment at Scaffold_372:445469..451360-

spliced messenger RNA

>EsuBft1363_3a-0001 ID=EsuBft1363_3a-0001|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3476bp|location=Sequence derived from alignment at Scaffold_372:445469..451360- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGAGCTCATCATGGTCGCCTTCGGCGTTGCCGTTATCCAGCAGCT
ATTGTCTTCGCTCACAACGGACACACCGGGAGCCGTTTCCGCGGAAGATG
CGGCCGACTTTGCCGAAAGCTTTGCAAGGAGCTGCTTGTTGCCCCAGCCC
CCCGACCAAAGCGAGGCCCTCGTACCGTGGCCCGCTGTCTCCGCGGGTGC
TGCAAGAGCGGCATGCCTCGTAGGGTTGAGTTGCGTTGCGGGAGGCATGT
TGGACAAGGGCACCTTGTTTCTGTTCGAGGTGGGGTTGAAGACCTTCATC
AACTTAATTATAATCCGAAGCCTGCGTTTCCTCGCATCGATGTTTCAAGG
ACCATTGTAACAACGCATGCATGGGCGAAGAAAGCCGGGGTGCAGGGGAG
GCCCGGATCACAGAGCATGGACACATTGGCGCCGAATCAGGCGCTGAAAA
AATAACGGGAGGGGGGTGGGCAACGCGGAATCAGGTTCTAGGGAACGGTT
CTGCCGTGTGCGAGGTGCAACGAGGTCTGAGGGAGCAGGCAACGGCGCGG
GGGGTGGAATCCCCGGCCGTCGCCGTGGCTCATCAGCATCTTCGGCTGCG
ATACGACGGGGAACGCTGTAACGGTCTGTTACCTCGCAATCAGACGCAAA
TGTACCAGTCAGTGACGGCAGCTGCAGCTGCTGCAGCAGCAACAGCAACA
GCGACATCAACATAAGGAAATCATTCAACAAAGCATTGTGGAGTGTACGG
GGTCCCAGATGGAAAATGCCAGGTTAGCACTCGTGTTGGTGGCAAAAGAG
GAACTATATAATGTGGTAATGCAACAGAGTGATCGATCTCTCCGTATGAT
AGTAAATGGCGATGCGATTGCCCCACCCGGCCCTTGAGATAGCCCGTGAC
GATTTAGAAGCATTGCGTGTGCCTCACTGTACCCTGTTCGTTCATTTGGA
ATATTGTGGCACTAAACGTCTACAGCCTGTGTTGAGAATTGGACCTGGGA
TAAGTTCCGTCTGCCATGGAGTACAGGTTCAGCTCCTAGAATAGCGGGCT
GACAAGAGTATGCGATCGATTCGGAACGGTCTGTTGTAATGCATACAAGC
TTGGCCTACGAGGGCATCGGTTGATTCCCACGGCATTTTCTGGTGGGGGT
TTGTCCCTAGAGCGCTGGCTGCTGAGGCTCAAGACAATTTCGTGGTAGGG
TAGACTAGCATACCAGTGGAAGTGTGATGTGGTCTGAGTCTAACTTGCAG
CTCGTAGATGTGATTCGCGTACACTACTCGGTTGGTATTGAGTGCTTGGC
CTTTGTTGTGTGCACGCGCGTGATGAAAGCACTCTCACGTATGTCACGTG
CCTTCACGCTTGCCATGTCTTGGATGAGGCAGATTCGATTCAAGATATTT
TTCGGGGCTGAGATACGAAGTATTGGTTTTTGTTCATGTTGGGAATTCTC
TGATGCGCCACGATTGTTGCGCTTGGGTATTTCCGCGTCTTTCTTGGAAC
ACCTGCTGTGGAGGCCATTATTTTTTGTCGTGTACTCCATGGGATCACGA
AGACCGGATGGACAGCGTGGCGGCAAGATCAAGGTCCTTCTGTAGTCGTC
GACATAGACCAGGTCAGGTGATCATAGTGTAGCGTGAGGTTGGTTTGTGG
TCGTCATTGTGGTGTGCAGGCATCCGAGTTAAAGTGCATGTATGTGGGAG
TGAGAGTTATATCGTGATCGTGTGGGCTCGGGGTTTTGAATCCACCGGCG
ATGTGTTTGTTTCTGTGTTGTGTGTGTGCATGTGTGGTGTCCGTTTTGTG
TTGTGAGCAGGTGGGTGGTAGAACAAACAATGCTGTTCATGTCGAAATGA
ATGTTTGTCGCCAACTCGATGTCCCCGTTGGATGCAATTGGTCGTCCTTT
TTTCTCCGGCACATCCCTTCTAGTTGTTCCCACCTTCTCATTGGGATTGG
CCGGGAGAGGTAGGGGGTGGGTTGTAGGGGTAAGGGGGGTAAGGGCGTGG
GGGAGATGGGGAGGAGTGTAAGAAGGTAACGGGAGTAAGGGAGGGTTATG
GGGGGTAAGGAGGGTAAGGGAAACATTAGTGATGTTGAAGCCCGATGTAG
GGTAACACTACCTCAGCCCTATATATATAGCTGCAGATGGCGCTTCAACA
TCCTTTGGAAACCACACGCGAACATACGAAGAGCTCCCACCTTTAAACTG
CTGCGGGTACGTGGAGACAATGCTTAGGGCAGAGCATACCACGTCTTGCA
TGATGAGTATGGTTCCTTCTATTTTTTAGCGGGATGCCGTCCCTTCTCAC
AGCCAGCGGCGAGTGGGGTTGGCTTGACCGTCGAAAGAAAGCGCCGACGA
TGCGCACCCTCGGGCTTGGTGGAGATGCGACGGTGGTATTTTGTTCCTGC
GGGACAATACCGTTCTGTATGATTCTGGTTGAGCTGAAGTGTCATCTCTT
GGTGGTACAGCAGTTGTTAATGTTCGAAAATCGCGGCGGGGGATTTGTAG
GTTATGCCACGATTTCTCTCGCTGCAGTTTTTCTTCTTGTTTCCAGGATG
GTGTATTATTGGTGGGTTGAATTTCGTGTCTGGAGACTTGTAGCGGGTTG
CATTGTGCTATATTTTAATCTACTTGCATTTTGTGTGCGTTGATTCACTT
GATGTACCTATTGTGCGCCGTTTCCTGCGATTAAGACGGAGCATTGATTG
GATTGGATTAATGTTTTGGGAGATGTTGCAGCAGGGGGCTGTTTAAGATC
TTGTGTTCGGGGAGATGATGCAGCAGGAGGGCTATTGAAAATTTCTTCCA
TGTTGTCTCGATGTTGGAGAAACGGCATAGTCGAGGAACGGCATTTTGCA
GGCGCCGGGGTTTGGACTTTGTTTTATTGCCGTACGTGGTACGGTAATAT
TTCCGAGCGATGTATAGGAGGAAGGATTTGGCATATTTTGATTAAGGTAT
GGTTGAGGCCTATGTGCTTCCGAAGCTTTTTTGACAATGGTCAGTAAGTT
GAAGGATGGTTCTATGCGACGATTTTGTTCGAAGCAATAATTGACGCGTT
TTCCCGGAGGCATCCGTCTCGAGTCTTTATGACGCGGCGACTCCGATGTA
ATTATTGATCTCTGCTGAACATTTTCCTAGGATAATTATTTGTATTTGAC
TGCCTGAGAATCGGTTGCGACGACATTTTCTCGAAAGGGGTGATTGTTAA
GACTCTAGTTAAATTCCATCGTGGATTAAGGAGGAATCCTAATATGAAAC
TTGAGTATACAGTAGTATAGATCCGGGAGTTGAAATGATCTGTGAATATG
AACGATGGAAGGTTTTCAGGGTTTGTTGCCGTTTCACCTGGCGATACGTA
CGGAGGATTTCTTCGTAGACCGTGTCTCGTACCGAGTAGGGGGGGTGTTG
TGTGTACTCGACAGAGTACGCATCCCCGAGATCTTCGGGGGGTACGCAGA
TGTGATATAATAAAGTAACTTGAGCC

protein sequence of EsuBft1363_3a-0001

>EsuBft1363_3 ID=EsuBft1363_3|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=119bp
MNELIMVAFGVAVIQQLLSSLTTDTPGAVSAEDAADFAESFARSCLLPQP
PDQSEALVPWPAVSAGAARAACLVGLSCVAGGMLDKGTLFLFEVGLKTFI
NLIIIRSLRFLASMFQGPL

mRNA from alignment at Scaffold_372:445469..451360-

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1363_3a-0001 ID=EsuBft1363_3a-0001|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5892bp|location=Sequence derived from alignment at Scaffold_372:445469..451360- (Ectocarpus subulatus male Bft15b)
ATGAACGAGCTCATCATGGTCGCCTTCGGCGTTGCCGTTATCCAGCAGCT
ATTGTCTTCGCTCACAACGGACACACCGGGAGCCGTTTCCGCGGAAGATG
CGGCCGACTTTGCCGAAAGCTTTGCAAGGAGCTGCTTGTTGCCCCAGCCC
CCCGACCAAAGGTTTGTGTATATTATCATGTGGAATTCTCACACCACTTT
CCTTCTGTTGCTGCACCGAGCACCACATAGCGCGGCGAAAAACCGGACGG
AGTAAATACGCTCCTAAAGTTTTTCGTGTCCGTCTATGTCGTCCGATTTC
ATACTTGTCGCGTACAAACGCCAAGCAGTCGTCCAAAATTTGCTTTGAAT
TTGTCGAGACGTAAGCGAACCACAAAACTGTGTGTTTGGAGTGTTCCCGA
TTCCCCCCCTTAACCCGCGTTTTCCCCATTTGCGCGCCCGTTCGACGTTT
TCCATCAAAAACGATGCAGCGAGGCCCTCGTACCGTGGCCCGCTGTCTCC
GCGGGTGCTGCAAGAGCGGCATGCCTCGGTACGCTTTCTTTAAATGTTTT
TGTCAACGGTTTGGGATCCCAAAACAACCTACACGGTCGGGCATGTACTC
ACCCCCCCTCGTTGTTTACTTCCCCCCCGGGTGGTTGCCATCGGGGTTGG
GTTTTCGTCGCTTGGCAACGACGTTGTAAAACAAGCCACCCCCCCCGGTG
TTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGCAACGACGTTGTAAAACA
AGCCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNCCCCCGGTGTTTGCCATCGGGGTTGGGTTTTCGTCGCTTGGC
ATCGATGTTGTAAAACAAGCCGATCACTTCGTGAGCTCGGCAACCAGGTT
GCCGCTTTTCCTTTTACCTCTGTTATTTTTTTGCGGTAGCCATAACGATG
GTCGAGTAGATTTTGTTGTGCGGGGTGGAGAACCCTCACTCCGCGCAAAG
GGGGTGATCGCACCACGTTGTAATAAATTGGTGAAGCACCCTCGAGGCAG
TTACAGTGTTTTTTTTTTACTGTGGAAGTGAAAGCACCAGAAAATATATT
AAGTCATACGCAGCTGTCATCCGTANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNCCCCTGGCAATCTCGCCCCAGTACCTGGCTGGCGTCCGCGACTAGT
TCGATGACGAGCATTTTGGTCACGCCTGTGTTTGTGTTATTTTTTCTCAG
TACTTACTCTTATTGTTTAACGTTGGCATCAATGGCGCAAACCGGCTGAC
CAATGAAGTGTATGAATGTGTGTTCCTCCCATTAATTCTGGCGCCGGTCT
CCACACCTCTCCGTGATTGTATCTATCGCATGTGCCAGCCGGGGTAACAC
AGGAGGAAGGTCGGATTTTTTTTTCCTTTTCTTGTCCTCCTATTCCCTTC
CTTGCGTACTTGCCTTAGGGTTTTTTTGTTGACATTTGTACAATATATTG
TTGCCCACGTTAGCCCTTGGCATGTTCGAGCACAAGCTAGAGAGTCTCGT
GCCTCCCGTCGCGAAGTTCCATGACTTTTCCTTCTTCACGCATCAACCTA
GAACAGGGACCCGTTTGTTAGCCCCCTCACGTTCCCTCAACGGCCGCACT
ACTATATTTCGTGTTTTTTAGACACTATCATTGGTTGATAGGCTACCCCT
TTCGCAGGTCAGTTGATAATCACCCACAGTGCCAGTGTCAGGAGGATCAC
GCCCAAGTCTTTGCTCATCTTCTCTCTGTGTGACAGTCTGTCTCACTCTC
TGTCTCCCTCTCTCTCTCCTGCTTCTCTCTCTCCCTCTCTCTCTCTCTCT
TTCTCTCTCTTCTCTCGAATGCGTCACAATCAATTGCCAGTAGGGTTGAG
TTGCGTTGCGGGAGGCATGTTGGACAAGGGCACCTTGTTTCTGTTCGAGG
TGGGGTTGAAGACCTTCATCAACTTAATTGTGAGAAGGGGATTGCGCACA
CGTTGCTGAAGCCGTTCGGTCATTGTTTTATTGAACTGTCTAGCTTTCCA
CTCGTTTGCCTATGGGTGCTTTGCCCATACATTGGCATGCGTGCATGGAG
TTTTGTAGCCTCGCGTTTGGACACAAGTTTATTGCTCTTTTACCAGTGTC
TATGACACCCCAAGTCCTGATGGCCGCTCACCCTGCTGTGTCGTCCAACC
AAAGTCGGGCGATAGAAGCGGCTTCGGCCGCAAAACAAAAGCGGCTTCGG
CCTCTAAGGGTGGCTGCAAAATCTCCTAGAACATTCCTTCCTCGTTGCAT
CTTCGCCATGGGCGATCACTGTTCGTGAGAAGGGGTCAGTCAGAAGACAA
CCCACACACACCGACGGCCACGCTGACTACTGTTTAAAGTGTCGGAGAGG
TAGTTTCCTAATGATGTGGTGACACTAATAACGTTCGTATGCACCATCCC
TCGTGTGTGTGTCTGTTGTCCAACAGATAATCCGAAGCCTGCGTTTCCTC
GCATCGATGTTTCAAGGACCATTGTAACAACGCATGCATGGGCGAAGAAA
GCCGGGGTGCAGGGGAGGCCCGGATCACAGAGCATGGACACATTGGCGCC
GAATCAGGCGCTGAAAAAATAACGGGAGGGGGGTGGGCAACGCGGAATCA
GGTTCTAGGGAACGGTTCTGCCGTGTGCGAGGTGCAACGAGGTCTGAGGG
AGCAGGCAACGGCGCGGGGGGTGGAATCCCCGGCCGTCGCCGTGGCTCAT
CAGCATCTTCGGCTGCGATACGACGGGGAACGCTGTAACGGTCTGTTACC
TCGCAATCAGACGCAAATGTACCAGTCAGTGACGGCAGCTGCAGCTGCTG
CAGCAGCAACAGCAACAGCGACATCAACATAAGGAAATCATTCAACAAAG
CATTGTGGAGTGTACGGGGTCCCAGATGGAAAATGCCAGGTTAGCACTCG
TGTTGGTGGCAAAAGAGGAACTATATAATGTGGTAATGCAACAGAGTGAT
CGATCTCTCCGTATGATAGTAAATGGCGATGCGATTGCCCCACCCGGCCC
TTGAGATAGCCCGTGACGATTTAGAAGCATTGCGTGTGCCTCACTGTACC
CTGTTCGTTCATTTGGAATATTGTGGCACTAAACGTCTACAGCCTGTGTT
GAGAATTGGACCTGGGATAAGTTCCGTCTGCCATGGAGTACAGGTTCAGC
TCCTAGAATAGCGGGCTGACAAGAGTATGCGATCGATTCGGAACGGTCTG
TTGTAATGCATACAAGCTTGGCCTACGAGGGCATCGGTTGATTCCCACGG
CATTTTCTGGTGGGGGTTTGTCCCTAGAGCGCTGGCTGCTGAGGCTCAAG
ACAATTTCGTGGTAGGGTAGACTAGCATACCAGTGGAAGTGTGATGTGGT
CTGAGTCTAACTTGCAGCTCGTAGATGTGATTCGCGTACACTACTCGGTT
GGTATTGAGTGCTTGGCCTTTGTTGTGTGCACGCGCGTGATGAAAGCACT
CTCACGTATGTCACGTGCCTTCACGCTTGCCATGTCTTGGATGAGGCAGA
TTCGATTCAAGATATTTTTCGGGGCTGAGATACGAAGTATTGGTTTTTGT
TCATGTTGGGAATTCTCTGATGCGCCACGATTGTTGCGCTTGGGTATTTC
CGCGTCTTTCTTGGAACACCTGCTGTGGAGGCCATTATTTTTTGTCGTGT
ACTCCATGGGATCACGAAGACCGGATGGACAGCGTGGCGGCAAGATCAAG
GTCCTTCTGTAGTCGTCGACATAGACCAGGTCAGGTGATCATAGTGTAGC
GTGAGGTTGGTTTGTGGTCGTCATTGTGGTGTGCAGGCATCCGAGTTAAA
GTGCATGTATGTGGGAGTGAGAGTTATATCGTGATCGTGTGGGCTCGGGG
TTTTGAATCCACCGGCGATGTGTTTGTTTCTGTGTTGTGTGTGTGCATGT
GTGGTGTCCGTTTTGTGTTGTGAGCAGGTGGGTGGTAGAACAAACAATGC
TGTTCATGTCGAAATGAATGTTTGTCGCCAACTCGATGTCCCCGTTGGAT
GCAATTGGTCGTCCTTTTTTCTCCGGCACATCCCTTCTAGTTGTTCCCAC
CTTCTCATTGGGATTGGCCGGGAGAGGTAGGGGGTGGGTTGTAGGGGTAA
GGGGGGTAAGGGCGTGGGGGAGATGGGGAGGAGTGTAAGAAGGTAACGGG
AGTAAGGGAGGTACGGGGGAAGGGGAAAAACGGGGTAAGGAGGGTGAGGG
GGGTACCAGGGTTATGGGGGGTAAGGAGGGTAAGGGAAACATTAGTGATG
TTGAAGCCCGATGTAGGGTAACACTACCTCAGCCCTATATATATAGCTGC
AGATGGCGCTTCAACATCCTTTGGAAACCACACGCGAACATACGAAGAGC
TCCCACCTTTAAACTGCTGCGGGTACGTGGAGACAATGCTTAGGGCAGAG
CATACCACGTCTTGCATGATGAGTATGGTTCCTTCTATTTTTTAGCGGGA
TGCCGTCCCTTCTCACAGCCAGCGGCGAGTGGGGTTGGCTTGACCGTCGA
AAGAAAGCGCCGACGATGCGCACCCTCGGGCTTGGTGGAGATGCGACGGT
GGTATTTTGTTCCTGCGGGACAATACCGTTCTGTATGATTCTGGTTGAGC
TGAAGTGTCATCTCTTGGTGGTACAGCAGTTGTTAATGTTCGAAAATCGC
GGCGGGGGATTTGTAGGTTATGCCACGATTTCTCTCGCTGCAGTTTTTCT
TCTTGTTTCCAGGATGGTGTATTATTGGTGGGTTGAATTTCGTGTCTGGA
GACTTGTAGCGGGTTGCATTGTGCTATATTTTAATCTACTTGCATTTTGT
GTGCGTTGATTCACTTGATGTACCTATTGTGCGCCGTTTCCTGCGATTAA
GACGGAGCATTGATTGGATTGGATTAATGTTTTGGGAGATGTTGCAGCAG
GGGGCTGTTTAAGATCTTGTGTTCGGGGAGATGATGCAGCAGGAGGGCTA
TTGAAAATTTCTTCCATGTTGTCTCGATGTTGGAGAAACGGCATAGTCGA
GGAACGGCATTTTGCAGGCGCCGGGGTTTGGACTTTGTTTTATTGCCGTA
CGTGGTACGGTAATATTTCCGAGCGATGTATAGGAGGAAGGATTTGGCAT
ATTTTGATTAAGGTATGGTTGAGGCCTATGTGCTTCCGAAGCTTTTTTGA
CAATGGTCAGTAAGTTGAAGGATGGTTCTATGCGACGATTTTGTTCGAAG
CAATAATTGACGCGTTTTCCCGGAGGCATCCGTCTCGAGTCTTTATGACG
CGGCGACTCCGATGTAATTATTGATCTCTGCTGAACATTTTCCTAGGATA
ATTATTTGTATTTGACTGCCTGAGAATCGGTTGCGACGACATTTTCTCGA
AAGGGGTGATTGTTAAGACTCTAGTTAAATTCCATCGTGGATTAAGGAGG
AATCCTAATATGAAACTTGAGTATACAGTAGTATAGATCCGGGAGTTGAA
ATGATCTGTGAATATGAACGATGGAAGGTTTTCAGGGTTTGTTGCCGTTT
CACCTGGCGATACGTACGGAGGATTTCTTCGTAGACCGTGTCTCGTACCG
AGTAGGGGGGGTGTTGTGTGTACTCGACAGAGTACGCATCCCCGAGATCT
TCGGGGGGTACGCAGATGTGATATAATAAAGTAACTTGAGCC

Coding sequence (CDS) from alignment at Scaffold_372:445469..451360-

>EsuBft1363_3a-0001 ID=EsuBft1363_3a-0001|Name=EsuBft1363_3a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=360bp|location=Sequence derived from alignment at Scaffold_372:445469..451360- (Ectocarpus subulatus male Bft15b)
ATGAACGAGCTCATCATGGTCGCCTTCGGCGTTGCCGTTATCCAGCAGCT
ATTGTCTTCGCTCACAACGGACACACCGGGAGCCGTTTCCGCGGAAGATG
CGGCCGACTTTGCCGAAAGCTTTGCAAGGAGCTGCTTGTTGCCCCAGCCC
CCCGACCAAAGCGAGGCCCTCGTACCGTGGCCCGCTGTCTCCGCGGGTGC
TGCAAGAGCGGCATGCCTCGTAGGGTTGAGTTGCGTTGCGGGAGGCATGT
TGGACAAGGGCACCTTGTTTCTGTTCGAGGTGGGGTTGAAGACCTTCATC
AACTTAATTATAATCCGAAGCCTGCGTTTCCTCGCATCGATGTTTCAAGG
ACCATTGTAA