Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6334.EFV58439 |
| ProteomeId | EsuBft1363_4 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 396 |
| Hectar predicted targeting category | other localisation |
| Evalue | 3.34e-24 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0005488 |
| GO | 0090304 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1363_4a-0001 ID=EsuBft1363_4a-0001|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_372:438363..438758- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAAAAGTGTGT
GACTTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCCCTGTATGAGGATCACGAGGGGGCTATCCAGAT
AGCAATACACCCGATCTCGAATTTCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATGAACTTGAAGTGA back to topprotein sequence of EsuBft1363_4a-0001 >EsuBft1363_4 ID=EsuBft1363_4|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=131bp
MCAGGAIAWFSKTQKCVTLSTTQAEYVAVADMGKEILFLRQVWRFMLPKE
LRPCIPLYEDHEGAIQIAIHPISNFNSKHIDVRHHFLRQLVDEKEVEIIH
VASKYQHADFLTKALPEREFVSHRDYVMNLK back to topmRNA from alignment at Scaffold_372:438363..438758- Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1363_4a-0001 ID=EsuBft1363_4a-0001|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=396bp|location=Sequence derived from alignment at Scaffold_372:438363..438758- (Ectocarpus subulatus male Bft15b)
ATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAAAAGTGTGT
GACTTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCCCTGTATGAGGATCACGAGGGGGCTATCCAGAT
AGCAATACACCCGATCTCGAATTTCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATGAACTTGAAGTGA back to topCoding sequence (CDS) from alignment at Scaffold_372:438363..438758- >EsuBft1363_4a-0001 ID=EsuBft1363_4a-0001|Name=EsuBft1363_4a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=396bp|location=Sequence derived from alignment at Scaffold_372:438363..438758- (Ectocarpus subulatus male Bft15b)
ATGTGTGCAGGAGGGGCGATTGCATGGTTCTCCAAGACTCAAAAGTGTGT
GACTTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAGGTTTGGCGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCCCTGTATGAGGATCACGAGGGGGCTATCCAGAT
AGCAATACACCCGATCTCGAATTTCAACTCGAAGCACATCGACGTGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATGAACTTGAAGTGA back to top
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