Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 6334.EFV58439 |
| ProteomeId | EsuBft1363_8 |
| Protein domains | PTHR11439 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | retrovirus-related pol polyprotein from transposon tnt 1-94 os:nicotiana tabacum pe:2 sv:1 [Automatic annotation] |
| Nb exon | 2 |
| Max annot lvl | 33208|Metazoa |
| Length | 774 |
| Evalue | 7.32e-25 |
| EggNOG OGs | COG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3D5G4@33213|Bilateria,40FC4@6231|Nematoda |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Reverse transcriptase (RNA-dependent DNA polymerase) |
| COG category | L |
Cross References
External references for this mRNA
| Database | Accession |
|---|
| GO | 0003824 |
| GO | 0005488 |
| GO | 0090304 |
| GO | 0016740 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft1363_8a-0001 ID=EsuBft1363_8a-0001|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=774bp|location=Sequence derived from alignment at Scaffold_372:416303..417186- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTGTGCGGGAGGGGCGATTGCATGGTTGTCCAAGACTCAAAAGTGTGT
GAATTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAAGTTTGGTGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCACTGTATGAAGACAACGAAGGGGCTATCCAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGCGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATNATCAGCATGCCGACTT
CCTCACGAAGGCGCTACCTGAGAGTTTGTTTCCCACCCGGACTACGTGAT
GAACTTGAAATTATCAATGGAATCATAGCGTCAGAGAAAATTACCTGTGT
GTCTACGATTTCCCAGACAGCATACAGGGACATCTCCCCTGTGGGTAACA
GGCTCAACAAATCAGTTTGGTAACTGTCTTGTGTGTCTCATATATGTTAT
GTTGGGAAGGTGCAGACGAAAGGTGTTGGGTACTGTTGGGTAGTCGGGCG
TTTTGTGTGTCGCACCCTGTTAGTTGTAGGACATGCAATCTCCATCAGTT
TATAAACATATTCTCAGTTTGGCATGCATATGTGCGGAGTATGTGCGGCT
GATGTGCCATCTCTATCGCAGAAA back to topprotein sequence of EsuBft1363_8a-0001 >EsuBft1363_8 ID=EsuBft1363_8|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=190bp
MCAGGAIAWLSKTQKCVNLSTTQAEYVAVADMGKEILFLRQVWCFMLPKE
LRPCIPLYEDNEGAIQIAKHPISNSNSKHIDARHHFLRQLVDEKEVEIIH
VASKYQHADFLTKALPEREFVSHRDYVXISMPTSSRRRYLRVCFPPGLRD
ELEIINGIIASEKITCVSTISQTAYRDISPVGNRLNKSVW back to topmRNA from alignment at Scaffold_372:416303..417186- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft1363_8a-0001 ID=EsuBft1363_8a-0001|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=884bp|location=Sequence derived from alignment at Scaffold_372:416303..417186- (Ectocarpus subulatus male Bft15b)
ATGTGTGCGGGAGGGGCGATTGCATGGTTGTCCAAGACTCAAAAGTGTGT
GAATTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAAGTTTGGTGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCACTGTATGAAGACAACGAAGGGGCTATCCAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGCGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATNATCAGCATGCCGACTT
CCTCACGAAGGCGCTACCTGAGAGTTTGTTTCCCACCCGGACTACGTGAT
GAACTTGAAGTGAGTAGTCCGGGAGATTTTTTTCGCTTTTGGGTCTTGTG
TCTTTTGTTTTATTTTTCTTAATGTGACGCAACGAGTCCATCTCTATCAT
AGAAAATAGTCAGAGACAGATTATCAATGGAATCATAGCGTCAGAGAAAA
TTACCTGTGTGTCTACGATTTCCCAGACAGCATACAGGGACATCTCCCCT
GTGGGTAACAGGCTCAACAAATCAGTTTGGTAACTGTCTTGTGTGTCTCA
TATATGTTATGTTGGGAAGGTGCAGACGAAAGGTGTTGGGTACTGTTGGG
TAGTCGGGCGTTTTGTGTGTCGCACCCTGTTAGTTGTAGGACATGCAATC
TCCATCAGTTTATAAACATATTCTCAGTTTGGCATGCATATGTGCGGAGT
ATGTGCGGCTGATGTGCCATCTCTATCGCAGAAA back to topCoding sequence (CDS) from alignment at Scaffold_372:416303..417186- >EsuBft1363_8a-0001 ID=EsuBft1363_8a-0001|Name=EsuBft1363_8a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=573bp|location=Sequence derived from alignment at Scaffold_372:416303..417186- (Ectocarpus subulatus male Bft15b)
ATGTGTGCGGGAGGGGCGATTGCATGGTTGTCCAAGACTCAAAAGTGTGT
GAATTTGTCTACCACGCAGGCAGAATACGTGGCGGTGGCGGACATGGGGA
AGGAGATTTTGTTTTTGAGGCAAGTTTGGTGTTTCATGTTGCCTAAGGAG
TTGCGGCCGTGCATTCCACTGTATGAAGACAACGAAGGGGCTATCCAGAT
CGCAAAACACCCGATCTCGAATTCCAACTCGAAGCACATCGACGCGCGGC
ATCACTTCCTCAGGCAGCTCGTAGATGAGAAGGAGGTAGAGATCATCCAC
GTAGCGTCGAAGTATCAGCATGCCGACTTCCTCACGAAGGCGCTACCTGA
GAGAGAGTTTGTTTCCCACCGGGACTACGTGATNATCAGCATGCCGACTT
CCTCACGAAGGCGCTACCTGAGAGTTTGTTTCCCACCCGGACTACGTGAT
GAACTTGAAATTATCAATGGAATCATAGCGTCAGAGAAAATTACCTGTGT
GTCTACGATTTCCCAGACAGCATACAGGGACATCTCCCCTGTGGGTAACA
GGCTCAACAAATCAGTTTGGTAA back to top
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