EsuBft1363_10a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_10a	EsuBft1363_10a	Ectocarpus subulatus male Bft15b	gene	Scaffold_372 388487..394329 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_10a-0001	EsuBft1363_10	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_372 389567..392420 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_10a-0001-exon	EsuBft1363_10a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 388487..389689 -
EsuBft1363_10a-0001-exon	agat-exon-2062	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 390415..390447 -
EsuBft1363_10a-0001-exon	agat-exon-2059	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 390927..391030 -
EsuBft1363_10a-0001-exon	agat-exon-2061	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 391849..391967 -
EsuBft1363_10a-0001-exon	agat-exon-2060	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 392389..392466 -
EsuBft1363_10a-0001-exon	agat-exon-2063	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 394161..394329 -

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_10a-0001-exon	agat-three_prime_utr-3285	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_372 388487..389566 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_10a-0001-cds	EsuBft1363_10a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_372 389567..389689 -

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft1363_10a-0001-exon	agat-five_prime_utr-2165	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_372 392421..392466 -
EsuBft1363_10a-0001-exon	agat-five_prime_utr-2166	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_372 394161..394329 -

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_372:388487..394329-
coding sequence from alignment at Scaffold_372:388487..394329-

spliced messenger RNA

>EsuBft1363_10a-0001 ID=EsuBft1363_10a-0001|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1706bp|location=Sequence derived from alignment at Scaffold_372:388487..394329- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
CCGCACCGCCTGCAAACACACACAAAACAAAAATGCGCGAGAGCGAGCGC
GTGTGGGGAGCCCAGGGAGTCTCCTGTTGCGAAGACCTCTGCAGCATCAG
GGACGGAGAGCAATAAAAATTATTATTGCTGTTGCGACGACGGGCGGGGT
ACGAGAAGTGGAAGCAAAGGTGTGCTTGTTGCGTGGACACGATAGGAGAT
TCATATGCTGCAGCCATGAACCCTGTGGGTTACGCGCCTCTTCGCGGTCT
TCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGGTTG
CTTCTGCCGCCACAGTCGGCAGCATTTCGGCGCGGACTACTAGCGGCAAC
GCCGGTCTCCGCTCAGGCAAGGCATGCGATCCCGGGGACGCTGACTGCTT
CGGAGACGAAAGAGACGACTCCAGCTTCCTCGGCTTCGCATGCATCTGTT
GCATGTTCTTGCTGTTTGTGGTGTTTCGCACCTTGCGGGTTGCTACGATG
TGGGCGAGGGTACCAGAACTATTGTACAAGGCGCGGGAGCTAAAAAGTGC
AAGGGAGAACACCGAATCCTCCGCGGTTGTAGGGGGAGATTGGAGAGGGG
TCAGCAAAAGTGGAGGCTTGACTTGAGCACGCACATGTGTTGCTTGTGAC
CAAGCGGAGGGGGCAGCATACTGCAGTAGCGTGGCGTAGCAGGGGCCAGG
ACCTTGCGATGTTGGAAAGGATCCCGGAAGCGAGAGATAGATCCAGGGGG
AGTGGAAGACGAACAGTCAGAGCTTTGTGTCTCTTGGAAGAAAAACGTTG
TACAACAACGCGCATGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCC
TCCGCAGCACGTTCTTTGGCGGATGAAGGCGGGATGCCCTTCGTTACGAT
TTTCTGCACCAAGACGGGTGCGTTTGTACGTGCGGGTCTTCCTTATTTCA
GTTGGATTGTAGACCTTTATTTGGTGTAATGTAGTTTGGAGGGGTGGAAA
GGAGGGATTTGATCCATCAGGCTGTTATTTGGAGCTTGGACGGTGTCGTC
GATTCCTTTTTTTTTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAAT
AATCCGGGGTGCGGAGAGGGGCCCACCTGGTCGAGTGGAGAAACCTGACG
ATGACCGACCCTCAACTTGATAGGGTTGCGAGCGGTGTAGCAAATTGTTT
GTGGTGGTCGTGGTGCTCCTGCAGCGTCAGTAGAGGCCGAGACATAGGAT
CCAAGCTGGAGCGATGGAAGGCTTTCAGCTTCTTTTTTTTGTGGGGCTGC
TTTTCGGGCGCGGCATGTTTGTTCTTCCTTTGCTCCACATACGCAGGCGC
TTAAAGTAAAAAAATGCTATTCTCAAAGTGGTAGAGTACATGTAGCTCTC
GGTAATTTTTGTTCCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGA
TAGTCGCTTCCCGCTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGATA
ACCCTTTCTACTTTGGAGGGAACAACGAAAGCGCATCAACAACCAAGACC
ACAGCCAGTGCCAGTGCCCGCCCTCTTGAGAAATGCGAGAGAGTCAGGTT
GGCGTTCTAAAAACTGACAAAAACGCCGAGGTTGAAGGTGCGAGTGCAAT
TCTAGGTCAGGCCCTTTAAACGCACGATTACGCTGAAACTTGTTTTTTGT
AGCCCG

protein sequence of EsuBft1363_10a-0001

>EsuBft1363_10 ID=EsuBft1363_10|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=136bp
MNPVGYAPLRGLPLGAMFSLVVVLAGSVASAATVGSISARTTSGNAGLRS
GKACDPGDADCFGDERDDSSFLGFACICCMFLLFVVFRTLRVATMWARVP
ELLYKARELKSARENTESSAVVGGDWRGVSKSGGLT

mRNA from alignment at Scaffold_372:388487..394329-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft1363_10a-0001 ID=EsuBft1363_10a-0001|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=5843bp|location=Sequence derived from alignment at Scaffold_372:388487..394329- (Ectocarpus subulatus male Bft15b)
CCGCACCGCCTGCAAACACACACAAAACAAAAATGCGCGAGAGCGAGCGC
GTGTGGGGAGCCCAGGGAGTCTCCTGTTGCGAAGACCTCTGCAGCATCAG
GGACGGAGAGCAATAAAAATTATTATTGCTGTTGCGACGACGGGCGGGGT
ACGAGAAGTGGAAGCAAAGGTATGCAGCCATCATCAGCCGGTCTGGAGAC
GATCATATTTCCCAGGGATTGGTTTCAGCGGTCACGTTGTTTTGATCAAC
GACAGAGAGTCGCTCGGGGCAAAATTGACGAGGAGGGATAGGGGGGCGAC
GAGAAGAAGAGCACTTGTAACCCGTCCCAGCCCGCCTTCTCATTATTTGC
ATCGGTCGTGGCGTAGATAGGCTGGTTTACCGAGGCTGAGTGCTTTTTTG
AAGAGCGAGGGTGTCGTTTCGTCACCCGCTCGTGCTGGCTCTCTCTCTCT
GCCCGGGCCGCAGATGAGGGGGATCGCGCACCAAGCACGGCTTGACCCTG
TCACCTGTGGGTCTTTTTGTCCCGAGCCTTAGTCTAGCTTAGTAAGTCAG
ATTCCCCACACGACGGCAAGAGCGCCGCCTTTCAGGTGTGGGAGGAAAGG
TGGTGCTTGTTTCTCCATTAGGATACATCCCGCCCACAACGGAGACGGAG
ATGTGGGGGGTTGAGGGGGGGCGGGAGCAAGGTGCATTGTTGACGGCGAC
ACACACAGCTCGTCTGCACATATGACAGCGCGACGCAAGAGAGTACATAG
TCTAAGCAAGGGGCCTCTTGTTGTACCAGAAACTGCTAGTGCCCCCAACG
CGAGACAAATAACAGAGTACAACAACATTACATGGACGGGCTATACCGCA
ATATATCGATGTTTTGGGTGTACATGCGCGACGACATCACTTCCCCTCCG
GTCCAGCCTACAAGAGACCGTGTTTATGCATGACGGTACCCTGTGGCTGC
ATTTCCTCTGTTCCAGCCGGGTATCGTTCACCGTGGGTCTTCGGTCTTAG
GAAGCTGCACCCTTGCGTGGTACCTTGGGGTCACTGTGTGGGTGTAAATA
ATAGGCCGAGGATAAAACAGGGTGGGGCGGCGCACGGCCCTTTGTTCCCC
ACATTCGCGTGGAATATGGTGTCATACAACTTTTGGGCACTAGTGGCGCA
ACAACAAAAAAAGTGGTGCAGATGAACCGATTCTAAACTTGATGTGGAGA
CGGAGCAGTCTGGGAAGGGGTTTTGAGGACAGTCGGGAGTGGACTATCAC
CTAGGTTTCCCCCTCTCACGCAACGCCGACATAGTCGAGATCATTTGACA
AGTGGAACCATGAGGCCTGGTAACCGTTCTCTCTCGTAGCGGTGTAGTGC
GAGTAGATGGTCCCGGTAGAGGGCAATCGACCTCCGGTGCACGCTTAATA
AGTATTTGAACCTCAACCTGCAACCACCCGAACGAAGGAAAGTGGGCGTC
ATCGCAGGGCCGACCAACCGCAGGGAAACTGCAAGCACGAAAGAAAGGGA
TGATCAAATTCATGACAATTGCGTCCCAACAACTCAATAACAAAACTAAC
AAAATGGTTCCATGTGACTACACACAAGCAACCATTCCCAATGCACTGCA
TGTTGTCTGTTTTCGCCCGCGGCCTTGGCAACCTTGATGCGGGAGTGTGA
TGAAGTGCCGTCCCCGTGCGCTTTGCGTCAGAAACCCTTGTTCTGTTTTT
CGAACTACTGTAAATAACCGTTAAGTCTGGGGGTGCCCGATGATGAGGCT
TTCGCCCCCACTCTTTTGTCGCTTCGTTCGATTGTCCTTGAAACCGGCCA
TCCATGCTCCCGAACGCCCAAATCGCGGGGCACCGCCGTCTCCCCCACCA
TTGGTTGCCCCAGGTGTGCTTGTTGCGTGGACACGATAGGAGATTCATAT
GCTGCAGCCATGAACCCTGTGGGTTACGCGCCTCTTCGCGGGTAAGAAAG
ACGATTCCATGTCTTCTACGATTATTGAGTGGTAAGCTGATCCCGATCTA
CCACTTTCCATATTCAAAACGAAGCTTGTCTTCGATCATCCCTCGGTAGT
TTCGTGTCGAAACGGTAGGCGCGCAAGTAGTGACATCACATGTATATATC
CCACCAACCACCAGAACACCCGCGTGCAAGCAGTCGCATTTGCATGTGCA
CGTCTCACCACCAGCGGCCGGGGTCATGAGCACGGATCCCGAGCACGCTC
GCGAAGCAAACATACTGCCGCTGTTAATGAACGTTTACCGTCGGTGCGTG
TTTCAGCGTAGTCTCTACGTAAAATATGACATGGGTGCCCTGGCGTATAT
TCATACGTATAGTTCCAACCTGCCCTCCGCCATGCCCCCATTATTGTTCT
GTGTCATGGCAGTCTTCCCCTAGGGGCCATGTTTTCGCTGGTGGTTGTCT
TGGCGGGGTCGGTTGCTTCTGCCGCCACAGTCGGCAGCATTTCGGCGCGG
ACTACTAGCGGCAACGCCGGTCTCCGCTCAGGTAGGCTCCACAACGAGCA
GACGCTCGTTGGATTGTCATCGTATTTTGGCTCGGGGGGGAGCCCTGTCC
CTTGCTGCTGCCTTTGCCCGAGGTGGAAGCCTTTGTTCAGTCGTTGACCA
ACCGGGAGATGAAAGCTCCCGACTATGTAACCGACTAAATAGGTATTCCT
TCATGTCGTGTTCGTCTCGAGGCTTAGCACCTCATCGTGACGAAAGAAAG
TCGCCCACCCACGCTAGATATGTTGTGTTGTTGAGCGTTGTCTATCCCAC
GAGGCATAGCTCTCGCGGCCGTCCGTCCCTTGGTCGACGAACGGGCGTCA
TTTTCCGATATTTCCGACCTCACGTGCAGTGGCATCACAGGTGGAGTTCC
ATCTCCCCTTTCCGAATATGTCGGATGCCCGCGCCCGCTTGTGGAGACCT
TGCCAAGGTCGACCTCCTTGGAAATCACAACCAAGGCCACGAAAGGGGGA
AACGACATGTTTTCGAGGCCTTGGTTGTACTTCCCCAAGGTGTCCGACCT
TGACAAGGTCTCCACAAGGGGGTGCGGGCATCCGACATTTTGGGGAAGGG
GAGTCGACCTTCACCTGTGCAGGCAGGCATTAGTGCCGGCTGGTTGTGAA
CGCTGACACGCAGTACAATTCGGCAAACCGGAAACACAAGCGCTCTGGCC
AGTGTCCGCAACAACACGCCTCGCGTGATACGCCCCTCTCAAAGAGCCGC
GCTCCGATGACCACATGTCAAGTGCTTGAAAAAACCGTTGAGTGAGATGA
TGCTCATGTAGCATGATGAACGCGGGTGTGATGATGATGACGTCACCAGG
CAAGGCATGCGATCCCGGGGACGCTGACTGCTTCGGAGACGAAAGAGACG
ACTCCAGCTTCCTCGGCTTCGCATGCATCTGTTGCATGTTCTTGCTGTTT
GTGGTGAGAAGAAAGAGTGTGGCGTCCTCTGCGACCCAGATTTTTTACAT
GTGGAGCTTGTCCAAGTGTAGTATTGTCGGAAAGTTGTTTTCTGTGTCTT
GTGGCCTTGTTGCCACGTTCACACAGGCAGGGCCCCGTCGCGTCTCTTTG
CTCGCGTGAGGCTTCTGTTCGATTTTTCGAATGGTGTAACGGCCAAATCG
TTCAACACTTGTTTTCGCGCCGGCCCAAGGTACGTAAGTCCAGGGATGTT
CACGGTGCGTTTTTTTTCAGCTGGGAATGTCACGATGCGGTGCGGTTCCT
TCCCATTTCGAGACAACAAAAACGCACGGCACCACACCGTACCGTGACGT
GAGATACAATACAAAAAATGGCACTGCGAACAGTGCGGTTCTATATGGTG
TGGTGAACACCCCTGAAAAATTTAATCTCCCTCCCCCCTTTCCCTCGTGC
CCGGTCTTGCTTCTCGTCGGCTCACGCGACAGGTGTTTCGCACCTTGCGG
GTTGCTACGATGTGGGTGAGAGGAACTGCAATGCTCGTCCGCCTATGGGC
TAGGGAGAGGGGACTTATGGTTCGGCCAGGACGTCTGTTTCACGGGTTGA
TCATTTTGCCAAACTTTCAAGACCATACTTTTTAACTAGGCGGGAGTCCA
ACCGTTCTACAAGTGATCCCCGCATCGAGGCAGACGACACAGGTTTCGAA
CTATAATTTTGTCAGGGAAAAAAAGGCACGCGAATCGTATTTATTTCAAT
TCTTTTTTGGACCAGCCTTGATTGGCAGACTGGGAGACGATGTGGGATTT
TGAAAAAATGTGGAATATCTTACTCAGGATTGATTTTTTGTTTTAATGGG
TAAACCTCGAGTCTCGGAACAATGCATACGAGGGGGAGTCGCGTGCCGCC
CTCCTTCGGAAAATCGTGCTGGTGGTGGTTATCGTAGGAAAACGAGAAAC
AAGAATCCTATCAGATTCGGTTCGTGGGCCATGTCTTTTTCGTCGATGGT
CGTCGAAAATTGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGG
GGGGGGGGGGGGTTGGGTACTCATAGTCGTGCATGCCGTAGTCGTTAGAC
CATTGATCTCGGAGGGGGGGGAGGTGGATGGACCAAACGTTTGGGACACG
GCTAATTGCTCGTGGTCTCTTGAACATGCACTCACCACAGGCGAGGGTAC
CAGAACTATTGTACAAGGCGCGGGAGCTAAAAAGTGCAAGGGAGAACACC
GAATCCTCCGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGCAAAAGTGG
AGGCTTGACTTGAGCACGCACATGTGTTGCTTGTGACCAAGCGGAGGGGG
CAGCATACTGCAGTAGCGTGGCGTAGCAGGGGCCAGGACCTTGCGATGTT
GGAAAGGATCCCGGAAGCGAGAGATAGATCCAGGGGGAGTGGAAGACGAA
CAGTCAGAGCTTTGTGTCTCTTGGAAGAAAAACGTTGTACAACAACGCGC
ATGGCGTGGCGGGGCTCGGTCTTGTCCAGGGTAACCCTCCGCAGCACGTT
CTTTGGCGGATGAAGGCGGGATGCCCTTCGTTACGATTTTCTGCACCAAG
ACGGGTGCGTTTGTACGTGCGGGTCTTCCTTATTTCAGTTGGATTGTAGA
CCTTTATTTGGTGTAATGTAGTTTGGAGGGGTGGAAAGGAGGGATTTGAT
CCATCAGGCTGTTATTTGGAGCTTGGACGGTGTCGTCGATTCCTTTTTTT
TTTGTGAGAGATTGCATGTGAAGCTCTTCTTCCAAATAATCCGGGGTGCG
GAGAGGGGCCCACCTGGTCGAGTGGAGAAACCTGACGATGACCGACCCTC
AACTTGATAGGGTTGCGAGCGGTGTAGCAAATTGTTTGTGGTGGTCGTGG
TGCTCCTGCAGCGTCAGTAGAGGCCGAGACATAGGATCCAAGCTGGAGCG
ATGGAAGGCTTTCAGCTTCTTTTTTTTGTGGGGCTGCTTTTCGGGCGCGG
CATGTTTGTTCTTCCTTTGCTCCACATACGCAGGCGCTTAAAGTAAAAAA
ATGCTATTCTCAAAGTGGTAGAGTACATGTAGCTCTCGGTAATTTTTGTT
CCTTCTGCCCTTTTTTCAGCGTGTGTTCGACCGGGGATAGTCGCTTCCCG
CTGTTGAAGAGAAATGGAGCAAGACCTGCTGGAGATAACCCTTTCTACTT
TGGAGGGAACAACGAAAGCGCATCAACAACCAAGACCACAGCCAGTGCCA
GTGCCCGCCCTCTTGAGAAATGCGAGAGAGTCAGGTTGGCGTTCTAAAAA
CTGACAAAAACGCCGAGGTTGAAGGTGCGAGTGCAATTCTAGGTCAGGCC
CTTTAAACGCACGATTACGCTGAAACTTGTTTTTTGTAGCCCG

Coding sequence (CDS) from alignment at Scaffold_372:388487..394329-

>EsuBft1363_10a-0001 ID=EsuBft1363_10a-0001|Name=EsuBft1363_10a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=411bp|location=Sequence derived from alignment at Scaffold_372:388487..394329- (Ectocarpus subulatus male Bft15b)
ATGAACCCTGTGGGTTACGCGCCTCTTCGCGGTCTTCCCCTAGGGGCCAT
GTTTTCGCTGGTGGTTGTCTTGGCGGGGTCGGTTGCTTCTGCCGCCACAG
TCGGCAGCATTTCGGCGCGGACTACTAGCGGCAACGCCGGTCTCCGCTCA
GGCAAGGCATGCGATCCCGGGGACGCTGACTGCTTCGGAGACGAAAGAGA
CGACTCCAGCTTCCTCGGCTTCGCATGCATCTGTTGCATGTTCTTGCTGT
TTGTGGTGTTTCGCACCTTGCGGGTTGCTACGATGTGGGCGAGGGTACCA
GAACTATTGTACAAGGCGCGGGAGCTAAAAAGTGCAAGGGAGAACACCGA
ATCCTCCGCGGTTGTAGGGGGAGATTGGAGAGGGGTCAGCAAAAGTGGAG
GCTTGACTTGA