Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LN28 |
| ProteomeId | EsuBft102_2 |
| Protein domains | Coil |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 2759|Eukaryota |
| Length | 110 |
| Hectar predicted targeting category | other localisation |
| Evalue | 2.65e-12 |
| EggNOG OGs | 2CZS4@1|root,2SBGG@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | DDE superfamily endonuclease |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_2a-0001 ID=EsuBft102_2a-0001|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1105bp|location=Sequence derived from alignment at Scaffold_372:341546..342650- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGTCTTCGTTGACACCGGAGCGGAACAAAGCATCCTTCAGCGGGGCGGG
GCTGTGGCCTGTGGACATGGATCGAGCGCTGACCCGGCTTCAGGGCACGG
CGAAGAGGAAAGAGGGGCCGACCGGGCGCCCACCCCTAGAGGATGTCCCC
ATCGCCATGATCCACGAGCAGCTGGAAGAGGCCATCGGAGAGAGGGGCCT
GAGGCAATTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGTAGGCA
CGGTGATGCTCGGCGGTCTCCTGACTCAGAGGAAGCGCGCCAAGAAACTG
GCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAACTC
GGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGTAG
AGGCCGAGGCGAAAGCGGAGAGGGAAAGGGGGCGCGCAAGGAAGAGGAAA
GAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGACAGGCGAATACGGGGGG
TCGAAGACGGCGAGGGGGCCGGGAGCGCAGCTGGAAGAGGGGCCTCACCT
GGCCGTGGTCAAGGAGCGGCTGCAGCACAAGGGGCGGCTTTGCCCGTTCA
CCAGCCGGCACCCTCCTTGTCCCTGGTTGGACGGCAGCGGACGCCGACAC
CCGTTGTTGACGTGTAGCCGCCTATGAGACTCTCCGCGGTTTGTTTTCTA
CCACACTCAGAGTAGGACAAAACAAGATACAAAAGTCGTCAGTTTTTACG
TGGAGTCGATACATACCCTGTTGCACGTTGCTTGTTGATAGTAGCGTAGG
CAACGGTGGCGTTACAGCATGCCAATGGGGCGGGGGGGGGCGGCGGGGGC
GTTTGACCGAAAACCAGGGATGTCGTGATTCTGTCCCCGGGTGACCTCCA
TTTCTTTTTTTTGCGATAAATGTTTCTCATGCATGTCTGAATGCTACCTC
CAAATTGTATGTCGTGGCGATGTATGAACAGTCCAGAATAGACTATGCAG
GGTTCGTGGTGTACGGGGCTGATTCTTGCCGTAGCGGCACGCAAAGTACC
GAAAATATACCCATTTTTGAACAACTATTTCTTGACCGTACCAACTCCTT
TCGGT back to topprotein sequence of EsuBft102_2a-0001 >EsuBft102_2 ID=EsuBft102_2|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=219bp
MSSLTPERNKASFSGAGLWPVDMDRALTRLQGTAKRKEGPTGRPPLEDVP
IAMIHEQLEEAIGERGLRQLKAGGHTITGLKVGTVMLGGLLTQRKRAKKL
ATSRGSLGLPDGGNINSEEFLAKVDAKERADKVEAEAKAERERGRARKRK
EAAAAAAARARQANTGGRRRRGGRERSWKRGLTWPWSRSGCSTRGGFARS
PAGTLLVPGWTAADADTRC back to topmRNA from alignment at Scaffold_372:341546..342650- Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_2a-0001 ID=EsuBft102_2a-0001|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1105bp|location=Sequence derived from alignment at Scaffold_372:341546..342650- (Ectocarpus subulatus male Bft15b)
ATGTCTTCGTTGACACCGGAGCGGAACAAAGCATCCTTCAGCGGGGCGGG
GCTGTGGCCTGTGGACATGGATCGAGCGCTGACCCGGCTTCAGGGCACGG
CGAAGAGGAAAGAGGGGCCGACCGGGCGCCCACCCCTAGAGGATGTCCCC
ATCGCCATGATCCACGAGCAGCTGGAAGAGGCCATCGGAGAGAGGGGCCT
GAGGCAATTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGTAGGCA
CGGTGATGCTCGGCGGTCTCCTGACTCAGAGGAAGCGCGCCAAGAAACTG
GCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAACTC
GGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGTAG
AGGCCGAGGCGAAAGCGGAGAGGGAAAGGGGGCGCGCAAGGAAGAGGAAA
GAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGACAGGCGAATACGGGGGG
TCGAAGACGGCGAGGGGGCCGGGAGCGCAGCTGGAAGAGGGGCCTCACCT
GGCCGTGGTCAAGGAGCGGCTGCAGCACAAGGGGCGGCTTTGCCCGTTCA
CCAGCCGGCACCCTCCTTGTCCCTGGTTGGACGGCAGCGGACGCCGACAC
CCGTTGTTGACGTGTAGCCGCCTATGAGACTCTCCGCGGTTTGTTTTCTA
CCACACTCAGAGTAGGACAAAACAAGATACAAAAGTCGTCAGTTTTTACG
TGGAGTCGATACATACCCTGTTGCACGTTGCTTGTTGATAGTAGCGTAGG
CAACGGTGGCGTTACAGCATGCCAATGGGGCGGGGGGGGGCGGCGGGGGC
GTTTGACCGAAAACCAGGGATGTCGTGATTCTGTCCCCGGGTGACCTCCA
TTTCTTTTTTTTGCGATAAATGTTTCTCATGCATGTCTGAATGCTACCTC
CAAATTGTATGTCGTGGCGATGTATGAACAGTCCAGAATAGACTATGCAG
GGTTCGTGGTGTACGGGGCTGATTCTTGCCGTAGCGGCACGCAAAGTACC
GAAAATATACCCATTTTTGAACAACTATTTCTTGACCGTACCAACTCCTT
TCGGT back to topCoding sequence (CDS) from alignment at Scaffold_372:341546..342650- >EsuBft102_2a-0001 ID=EsuBft102_2a-0001|Name=EsuBft102_2a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=660bp|location=Sequence derived from alignment at Scaffold_372:341546..342650- (Ectocarpus subulatus male Bft15b)
ATGTCTTCGTTGACACCGGAGCGGAACAAAGCATCCTTCAGCGGGGCGGG
GCTGTGGCCTGTGGACATGGATCGAGCGCTGACCCGGCTTCAGGGCACGG
CGAAGAGGAAAGAGGGGCCGACCGGGCGCCCACCCCTAGAGGATGTCCCC
ATCGCCATGATCCACGAGCAGCTGGAAGAGGCCATCGGAGAGAGGGGCCT
GAGGCAATTGAAGGCGGGAGGACATACCATTACCGGACTCAAGGTAGGCA
CGGTGATGCTCGGCGGTCTCCTGACTCAGAGGAAGCGCGCCAAGAAACTG
GCGACCTCGCGGGGCTCTTTGGGCCTTCCCGACGGAGGCAACATCAACTC
GGAAGAATTCCTGGCAAAGGTTGACGCAAAGGAACGCGCAGACAAGGTAG
AGGCCGAGGCGAAAGCGGAGAGGGAAAGGGGGCGCGCAAGGAAGAGGAAA
GAGGCGGCCGCGGCGGCGGCGGCGCGGGCACGACAGGCGAATACGGGGGG
TCGAAGACGGCGAGGGGGCCGGGAGCGCAGCTGGAAGAGGGGCCTCACCT
GGCCGTGGTCAAGGAGCGGCTGCAGCACAAGGGGCGGCTTTGCCCGTTCA
CCAGCCGGCACCCTCCTTGTCCCTGGTTGGACGGCAGCGGACGCCGACAC
CCGTTGTTGA back to top
|