EsuBft102_7a-0001 (mRNA) Ectocarpus subulatus male Bft15b

You are viewing an mRNA, more information available on the corresponding polypeptide page

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
EsuBft102_7a	EsuBft102_7a	Ectocarpus subulatus male Bft15b	gene	Scaffold_372 277547..280642 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_7a-0001	EsuBft102_7	Ectocarpus subulatus male Bft15b	polypeptide	Scaffold_372 277581..280173 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_7a-0001-exon	agat-exon-4540	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 277547..277904 +
EsuBft102_7a-0001-exon	agat-exon-4539	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 278833..278948 +
EsuBft102_7a-0001-exon	EsuBft102_7a-0001-exon	Ectocarpus subulatus male Bft15b	exon	Scaffold_372 279693..280642 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_7a-0001-exon	agat-five_prime_utr-181	Ectocarpus subulatus male Bft15b	five_prime_UTR	Scaffold_372 277547..277580 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_7a-0001-cds	EsuBft102_7a-0001-cds	Ectocarpus subulatus male Bft15b	CDS	Scaffold_372 277581..277904 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
EsuBft102_7a-0001-exon	agat-three_prime_utr-296	Ectocarpus subulatus male Bft15b	three_prime_UTR	Scaffold_372 280174..280642 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Scaffold_372:277547..280642+
coding sequence from alignment at Scaffold_372:277547..280642+

spliced messenger RNA

>EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1424bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.  
TCTCTTTCAACACCACCCACCAACAACAAGACAGATGCCGCTATTATACC
AGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTC
GGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTCTGTTCCGAGCAAGCTC
CTCAGCTGGAGGGCGCACGTACACCAGGCGGAGCAGATTCTGGAAGCATT
GTCCAGCAGGACGAACTACGTCGTCGATACCGAGTATGTCTTTGCCAGCG
GAGGGTGGGCCAACGAGCAGGAATCGGGCAATCGGACTTGGCGTGGCATC
TCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGTCTTGCGCTTGACCCTG
TCCGCAAGGTACAAGAGCAACTACGCATCCGAGCACAGGAGGAGTTCGAT
AACGTAGAGGCTCTTGCTTCACCAGAGGGAGGCAAGACCCTCCAGCCGGT
TCTTGCTCTGGTACCCATCATCACGCTTCGACTGCAACTGGACGAGGTGG
AGAGCAATCTCAAAGATCCACGCCTGTTCGGAGCCGCGTTGACAATTCTG
CAAGCTCAAGACTTCCAGAAGAAAGACATCAAGCGCGTGTTCAACGCGTA
CAGCGACAACATCTACTACTTGCCGGATTCGGATCGGGAAAACAAGTACC
TCCAGGGCGGGGCGACGCCTTCCAGCCGACAAACGCTGCAGTATCTCCTC
CGAAACGATGTGATCGACAACGTCGAGGCTCTCACAGCGGAGATATCGTA
TCTAATCAGAGAGAGGGAGGTCGGGGGCGAGGCAGACACCGATGAGAAGG
ACTTGAGGATGTATTTGGGGAAGTGCAAGCAGAGCTTCGACAAGTACCTG
GGCATGGTGCTGCAGAACGAGATCGACGAGGCAACAGACATGGCAAAGGT
GGCCTTGGCCAACAAGAGAAAGGGAAATGCGCCCACTCCGGCGAAAACGC
TGTAGTAGCAGACCTCCTCGAACTAGATTGCTGCCGAGAACGGGGGGAGT
TTGTCCGATGCCGCTAGAAACCAGTAGAACGGTTTTGATCGTGCTCTTCC
TGTCTCGACAGCCTCCCGCCGATCCATCAGTCGCTATAGAGCGGTGGGAT
GTAGCTCTGTGTTGTTGATGGGTGTAGCAGTGTTAGAGTGCATGTTGTCA
AGATTTCAGTAGAACTGAAAAAAAAAAGGCTGCCACTCCAGTGGATAGGT
TAGTTCGCGATAGACTTCGTGTGGTGCACCTCGTCAATGATCTTGGAAGG
TGCGTAACAACAGAGTTGCGTCTCTCATGCACTTCAAAAGCTGAAAAGTG
TCTACAAGACGTGTTGGAAACCTGTGTTATTGTGGAGACGGAAGAACAAG
GTACAAACCACAATGCTTAGGTCATTGTAGACAAGAAGCGAGAAGTCGGG
GGTGGTCCAAAAAAACTAGCACGT

protein sequence of EsuBft102_7a-0001

>EsuBft102_7 ID=EsuBft102_7|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=306bp
MPLLYQPWSAMLLSSLLVSAPFGSGVIGFSTPSLFRASSSAGGRTYTRRS
RFWKHCPAGRTTSSIPSMSLPAEGGPTSRNRAIGLGVASLFSLAVAPTPG
LALDPVRKVQEQLRIRAQEEFDNVEALASPEGGKTLQPVLALVPIITLRL
QLDEVESNLKDPRLFGAALTILQAQDFQKKDIKRVFNAYSDNIYYLPDSD
RENKYLQGGATPSSRQTLQYLLRNDVIDNVEALTAEISYLIREREVGGEA
DTDEKDLRMYLGKCKQSFDKYLGMVLQNEIDEATDMAKVALANKRKGNAP
TPAKTL

mRNA from alignment at Scaffold_372:277547..280642+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=3096bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)
TCTCTTTCAACACCACCCACCAACAACAAGACAGATGCCGCTATTATACC
AGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCTCGTGTCCGCCCCTTTC
GGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTCTGTTCCGAGCAAGCTC
CTCAGCTGGAGGGCGCACGTACACCAGGCGGAGCAGATTCTGGAAGCATT
GTCCAGCAGGACGAACTACGTCGTCGATACCGAGTATGTCTTTGCCAGCG
GAGGGTGGGCCAACGAGCAGGAATCGGGCAATCGGACTTGGCGTGGCATC
TCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGTCTTGCGCTTGACCCTG
TCCGCAAGGTAGAGGTTGGAATCTCAAGAGCAGTACTTGCATACCGTATA
TGACACAAGATAACACACCCCCTGGACCGATTTTCAAAGCCCGATTACTC
CACGACAAAGAGGATGCACAAGCGAAACGATAAATTTTTCAAAAAGCTCT
CGACGAAAAGTTTTCAACGCCGCCGTTTTCGGCGCTGCAACTATTCCTGC
AGTTAAGAAATCGAGCTTCGAAAATTGGTCAAGGGGGTGTGTTATCTTGT
GTCATATACGGTAGTCTAACCCAAACTTGGCCAGCGCTGTACATGCCGTG
GCTGCTCCCCAGGCATGGATCCATGAACGAGTACAATATTTGCACCTAGG
CACAAGCCACATAGCTTGATAAGTAAGCGCTGAGAAGTGGTTCATGCAAC
ATCTTGCCAACAGAACACGAACTGTGGCAACTTTATTGCGGTGCATTCTT
GGAATACAACTGTGTAGAGGTGTACGTGCAGACTGCAGTAGACATAGCAC
TACAGCACATTCCAATCGGCAACGGCGAGCCAGACCGCGGTCATTTGGAG
GAAGTGCAACCTTTCGTGCCTGCACAGGCATCTTCGGATATGAAAACCAT
CGAAAAGCGCCTGCTGTTGGAACCTCCCGCCCTGCCAGAACTTCAAGCCA
TCATGATTGGTCTCTTGTTGTCTCGTCTTTCGACGATAGATTTGAAGTGC
GCGTTTGGGGTGGCAAGTTTCGAGGTGATATCAATGAGCTGGGTAATGGC
GACATACGTAGAATGCTACCTGGTATGTTGGGCCAGTAAAATACTTTTCC
ATCCCATCCTCATCCCATTCCCATGCGATTTCGATGGGAGTACCATCCCG
CCACATCACGGGAACAGATCTGTTTCCCCTGCAGATCGTCACACGGTGCC
CCTTCACGTTACTTGTGATCAATATTCATCCGCCAGGTACAAGAGCAACT
ACGCATCCGAGCACAGGAGGAGTTCGATAACGTAGAGGCTCTTGCTTCAC
CAGAGGGAGGCAAGACCCTCCAGCCGGTTCTTGCTCTGGTACCCATCATC
ACGTGAGCTTTGTACACCTTTCCTACGTCTCCGGGGTGTCGTTGAGAAAT
CGTTGAACTGTTCGTCCCCAGCAGTTTGTAAGCGACCAATTGAGGCTACA
ACAGCGATATGTGTCGACTTGGGCCGTAGATTTTGGACAGGTGGAGGCTC
CGTGCTGCGTTATATGCAAGATCATACCTGCAATTGCCCGGTTCCTCTCC
CCCCAAAACACTGGATGGTAGCTTGCAAACTTGAAGACTACGGAACGGGA
GGTTTTGTAGAACGGTACAAGCAAGAGTTTTTTTTCTGCAGAGTTGACTA
AATACGATTTGCTATCATTCCCCGAGAGGACTTCAAGACGCCGCCATGTG
TGTCTCGATTCGTGGCTCAAGCAGACAAGTGTTGTTTTTTTCGGATGTTG
TTAAGGTTGGTATGGGGTCGTTGTTGTCGTTGCTATTGATGCTCCATGTC
TTGAACCAAAGCAATATTCCAGGCGCGCTTCCTCGCACAGCAGGCTTGAG
CCTCGAAACAATCATTAGGTTTCGCATGGGGCAGTGGTACGTAGGAGGAT
ACAAAGTAGCGGTGTTTTGGCGCACACTTTGTCTACACAGCCATGGCAGT
GTCACTGTCCAACTATACGGTGTTTTTGTGAGGCTGACGCTGTTGCTGCG
AATGCCGGTCGCCCTCTCAACCATCCTGAGAACTAAATTTAAAGTCTCAT
TGTCGCGTGTGCTTCTCTCGTTCCCCGCGCGCTTCAAATGACAAAGGCTT
CGACTGCAACTGGACGAGGTGGAGAGCAATCTCAAAGATCCACGCCTGTT
CGGAGCCGCGTTGACAATTCTGCAAGCTCAAGACTTCCAGAAGAAAGACA
TCAAGCGCGTGTTCAACGCGTACAGCGACAACATCTACTACTTGCCGGAT
TCGGATCGGGAAAACAAGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCG
ACAAACGCTGCAGTATCTCCTCCGAAACGATGTGATCGACAACGTCGAGG
CTCTCACAGCGGAGATATCGTATCTAATCAGAGAGAGGGAGGTCGGGGGC
GAGGCAGACACCGATGAGAAGGACTTGAGGATGTATTTGGGGAAGTGCAA
GCAGAGCTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACG
AGGCAACAGACATGGCAAAGGTGGCCTTGGCCAACAAGAGAAAGGGAAAT
GCGCCCACTCCGGCGAAAACGCTGTAGTAGCAGACCTCCTCGAACTAGAT
TGCTGCCGAGAACGGGGGGAGTTTGTCCGATGCCGCTAGAAACCAGTAGA
ACGGTTTTGATCGTGCTCTTCCTGTCTCGACAGCCTCCCGCCGATCCATC
AGTCGCTATAGAGCGGTGGGATGTAGCTCTGTGTTGTTGATGGGTGTAGC
AGTGTTAGAGTGCATGTTGTCAAGATTTCAGTAGAACTGAAAAAAAAAAG
GCTGCCACTCCAGTGGATAGGTTAGTTCGCGATAGACTTCGTGTGGTGCA
CCTCGTCAATGATCTTGGAAGGTGCGTAACAACAGAGTTGCGTCTCTCAT
GCACTTCAAAAGCTGAAAAGTGTCTACAAGACGTGTTGGAAACCTGTGTT
ATTGTGGAGACGGAAGAACAAGGTACAAACCACAATGCTTAGGTCATTGT
AGACAAGAAGCGAGAAGTCGGGGGTGGTCCAAAAAAACTAGCACGT

Coding sequence (CDS) from alignment at Scaffold_372:277547..280642+

>EsuBft102_7a-0001 ID=EsuBft102_7a-0001|Name=EsuBft102_7a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=921bp|location=Sequence derived from alignment at Scaffold_372:277547..280642+ (Ectocarpus subulatus male Bft15b)
ATGCCGCTATTATACCAGCCATGGTCGGCAATGCTGCTTTCTAGCTTGCT
CGTGTCCGCCCCTTTCGGTTCCGGAGTCATTGGGTTTAGCACGCCCTCTC
TGTTCCGAGCAAGCTCCTCAGCTGGAGGGCGCACGTACACCAGGCGGAGC
AGATTCTGGAAGCATTGTCCAGCAGGACGAACTACGTCGTCGATACCGAG
TATGTCTTTGCCAGCGGAGGGTGGGCCAACGAGCAGGAATCGGGCAATCG
GACTTGGCGTGGCATCTCTCTTCTCATTGGCCGTGGCCCCAACGCCTGGT
CTTGCGCTTGACCCTGTCCGCAAGGTACAAGAGCAACTACGCATCCGAGC
ACAGGAGGAGTTCGATAACGTAGAGGCTCTTGCTTCACCAGAGGGAGGCA
AGACCCTCCAGCCGGTTCTTGCTCTGGTACCCATCATCACGCTTCGACTG
CAACTGGACGAGGTGGAGAGCAATCTCAAAGATCCACGCCTGTTCGGAGC
CGCGTTGACAATTCTGCAAGCTCAAGACTTCCAGAAGAAAGACATCAAGC
GCGTGTTCAACGCGTACAGCGACAACATCTACTACTTGCCGGATTCGGAT
CGGGAAAACAAGTACCTCCAGGGCGGGGCGACGCCTTCCAGCCGACAAAC
GCTGCAGTATCTCCTCCGAAACGATGTGATCGACAACGTCGAGGCTCTCA
CAGCGGAGATATCGTATCTAATCAGAGAGAGGGAGGTCGGGGGCGAGGCA
GACACCGATGAGAAGGACTTGAGGATGTATTTGGGGAAGTGCAAGCAGAG
CTTCGACAAGTACCTGGGCATGGTGCTGCAGAACGAGATCGACGAGGCAA
CAGACATGGCAAAGGTGGCCTTGGCCAACAAGAGAAAGGGAAATGCGCCC
ACTCCGGCGAAAACGCTGTAG