Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 2880.D8LLI3 |
| ProteomeId | EsuBft102_9 |
| Protein domains | PF13086 |
| Protein domains | IPR026852 |
| Protein domains | Coil |
| Protein domains | PTHR10887 |
| Protein domains | IPR027417 |
| Owner | apollo_admin@sb-roscoff.fr |
| Note | helicase sen1 os:saccharomyces cerevisiae (strain atcc 204508 s288c) gn:sen1 pe:1 sv:2 [Automatic annotation] |
| Nb exon | 5 |
| Max annot lvl | 2759|Eukaryota |
| Length | 2228 |
| Hectar predicted targeting category | other localisation |
| Evalue | 9.44e-172 |
| EggNOG OGs | COG1112@1|root,KOG1801@2759|Eukaryota |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| KEGG ko | ko:K10706 |
| Description | positive regulation of termination of RNA polymerase II transcription, poly(A)-coupled |
| COG category | L |
| BRITE | ko00000,ko01000,ko03021 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_9a-0001 ID=EsuBft102_9a-0001|Name=EsuBft102_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=2228bp|location=Sequence derived from alignment at Scaffold_372:249653..260244- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
ATGGTGGCGCAGGCGACGTCGGAACCAAGTCTGCAGCCCCTGCCAGAAAC
CGCTCAGAGGGCACCCGGAAACTCGACTACCAGCAACAACCTCTGGGCGA
CGAAATTGGCGCCTCCCTACCTGGTAGACGAAGCCTCGTTTACGGATGCC
TGCAAGCGACTATCGTCGGTGGAAGACTCTGCCCTTCTCGGGAAGTCCGG
TGCCGGAGGCGGGAGTCCGGCTACGGCCGCGGGTTTGGCCGCTGACATAG
CGGGGCCGGAGGAGTCGCTGATGCGATCGCTGGGGTGCCTTGCCAGCTTC
AGGGTTGCCCCGGAACTCCTCACCTCTCACGGCCGTGGCACCGCCAAGCG
CCTCAAGCGCCTCTCCAAGTCGGAGGTGTGGGGCCCTGACGTCCGCAACG
CTGCCGCTCGTCTCCTCCGGGCGTGGAGAGGGGTGGTTGACGTGGGCGGC
GGCGCGACCGCTTATTCCAAGGCGGCGACAAAGAGGTCACAAGACGAGGA
GCGTGGTGGTGCTGGCAGTGGTGGCGGTGGTGCTGGTAGCAGTGAAGGTG
GAGCCAAGGCTAAAGTTGGGGCTGAACAAATCGTTGATCGCGTCCGGCCG
GCGGCCTCGACAAAGCCGAGGCTAGTGGGAGAGAAAGAGCAGGAGGAGGA
GGAGAATGACGAGCAGCAGGGCATATCAAGCTCGGGACACAAATCCCCAG
CACCGATGCCTGACGCTGGTTCATCCAGTTCCGACTTTTCTCCGAAAGTC
ACCTGCCCTCCGGAGAAGCAACAGAAGGAGCAGCAGCAGACGCCCAAACG
GCCGAGCCTGGTACCCGCAGCTCTTTGGGACCGGCTTTCGCAAGAGTTCA
ACGTTTCTCAGCTGAGGGCAATATGGGCGGCCGCGGCGAGCGCGCGCGAA
GCCCACGAGGATCTCGCGGCAGCCGCTAGAGGGAACGATGGACCGGCGAC
TCCTGAAACGGCGGTGCTGGCTGAGAGGCGCGCTCCGGTCAACCACGCGG
CGGCGGCGACAGCGAATCGAAGGGAAGGCGGAGCGCGAGGAGGAGGGTCG
AAGGGGGGTGTGGTGCTGTTGCAGGGGCCCCCGGGCACCGGTAAGACCCG
CACCGTTCTCGGGGTCGTGAGCGCCATCCTTGCCCGCCGCGAGGAGAAAG
ATTGTGCTAGCGGTGGCGGGCGTAGCGGAGCGAGCGCTCGAGGTATGGGC
ACCACGCTGGCGCCTGAGGCGCGCCAGAAGCGGCCCGGGGTGGCGGGTAG
GTGGGTTGCGGCGAAGACGCACCAACGGGTACTCGTGTGCGCCCCTAGCA
ACGGTGCTGTGGACGAACTCGCCCAACGGCTGGCTCTGGAATCGGGCGGA
GTTTGGGACCAGCGCGGGAATGCTACTGCGCCGAGGGTGGTTCGCCTGGG
AAAGCCCTCGGAAGACGCGGCGGATCGGGTCAAGGCCGTGTCTCTTGAGT
TCATGGTAGAAGAGAGAGTGAAGCTCCACGCCAAGAGCGCCGAGGCGAGA
AATGCCGAGACGAAGATCAGAGAAACCCACGCTCGTATCGACGAGGCCGG
ACGTGCCGTGAGGAGCGGCGACGTCGGCGAGGTTGGCGGTATGGCTGGAA
TCGGAAGCGCAGAGAACAGGGATGCCCTCAGGAGCCTCGACGTCGAGCGC
GGCAAGATCAGGCGCTCGCTCGTGAGCAACGCCCAGGCAAGGCTTGGTTG
AGCGTGGTCGATCGCGTGGACGGCGAGGGCCGAAACGAACGTTGGAAAGG
CCGCAGAGCGGGAGCCCCAGCAGCAGCGGTAGCAGCACCAGCACCAGCGT
GTGATGGCGTAGAAAGCCGTGTGAGGAAGGCATTTCTGTGTTTGGCGATG
TTAGAGGCCACAGAGGGGCAGCAGCACGGCGGACGATTTGTCGACCGTTT
GAAGCAACGGGCTTGCCCATCTCCCTTCGGCGACATTCTCACGCTTATTT
CCATTTTGCCGCTGTCTTTGGCGAGCCGTTGTAGCCACCCTGCACGCCCC
TCGCCCTTGCAGGTTGTGTGCGCCACGCTCTCCGGATGTGGGTCAGGACC
CATGGTGGAGGCGGTAAGCCTTTCAGGCAAGGGCTTCGACACCGTTATCG
TAGACGAGGCTTGCCAGGCCACGGAGCCAAGCACACTGATACCCCTGTCT
TTAGGTTGTAAACGCCTCATCCTAGTAGGAGACCCTCGACAGCTTCCGGC
GACGGTTATCAGCCAACGGGCGGCCCGG back to topprotein sequence of EsuBft102_9a-0001 >EsuBft102_9 ID=EsuBft102_9|Name=EsuBft102_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=566bp
MVAQATSEPSLQPLPETAQRAPGNSTTSNNLWATKLAPPYLVDEASFTDA
CKRLSSVEDSALLGKSGAGGGSPATAAGLAADIAGPEESLMRSLGCLASF
RVAPELLTSHGRGTAKRLKRLSKSEVWGPDVRNAAARLLRAWRGVVDVGG
GATAYSKAATKRSQDEERGGAGSGGGGAGSSEGGAKAKVGAEQIVDRVRP
AASTKPRLVGEKEQEEEENDEQQGISSSGHKSPAPMPDAGSSSSDFSPKV
TCPPEKQQKEQQQTPKRPSLVPAALWDRLSQEFNVSQLRAIWAAAASARE
AHEDLAAAARGNDGPATPETAVLAERRAPVNHAAAATANRREGGARGGGS
KGGVVLLQGPPGTGKTRTVLGVVSAILARREEKDCASGGGRSGASARGMG
TTLAPEARQKRPGVAGRWVAAKTHQRVLVCAPSNGAVDELAQRLALESGG
VWDQRGNATAPRVVRLGKPSEDAADRVKAVSLEFMVEERVKLHAKSAEAR
NAETKIRETHARIDEAGRAVRSGDVGEVGGMAGIGSAENRDALRSLDVER
GKIRRSLVSNAQARLG back to topmRNA from alignment at Scaffold_372:249653..260244- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_9a-0001 ID=EsuBft102_9a-0001|Name=EsuBft102_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=10592bp|location=Sequence derived from alignment at Scaffold_372:249653..260244- (Ectocarpus subulatus male Bft15b)
ATGGTGGCGCAGGCGACGTCGGAACCAAGTCTGCAGCCCCTGCCAGAAAC
CGCTCAGAGGGCACCCGGAAACTCGACTACCAGCAACAACCTCTGGGCGA
CGAAATTGGCGCCTCCCTACCTGGTAGACGAAGCCTCGTTTACGGATGCC
TGCAAGCGACTATCGTCGGTGGAAGACTCTGCCCTTCTCGGGAAGTCCGG
TGCCGGAGGCGGGAGTCCGGCTACGGCCGCGGGTTTGGCCGCTGACATAG
CGGGGCCGGAGGAGTCGCTGATGCGATCGCTGGGGTGCCTTGCCAGCTTC
AGGTGGGTGCGAGGAGCATCCCTCGAGCTTGGGTTGTGGGGCAAGCCCGC
GCCGCGACCTTGGTTTATTTAGAGCGCAGAATCAGGTGCACAGCATGATT
GATAAACGAGCTGCAGCTCTGCAACCGTGGCACAGGCGTGTTTGTCGACG
AAGGACCACGTCGCTCGTTCTTCGCACATGTGGTGGGTTTAGTATCGTCT
TTTCATGAAACAGAACGTAATTCGCCTGTGTTCTATTAGCGGTATTGTTG
GTTGATTTTTACGTCTATTACCGTGTGGTTGGATTATTCCAGTCTTGACG
GTGAGTTGGATTCGCCTTGACCCATGAAAAGAACGTAATTTTCTTGTTTT
CTCCCGGTACCGTCTTTTGTTTTGCACCATGTGGCTGGAATGTTTCGACC
CCAAGAGCCCCTGGTGCCGAAACCTCGGTAGGGGTGGAGTCCTCCTTTCC
AACGACCCACCGACGATTGGTGACCCACATATTCAAAGTTTGACCCCCCG
CTAACGTCAGTGGTCCAACGAATACGCGCATGCACGGCTATGAGTACCCC
CCACGACTCTCGAGGACGCGTGGTCAAAAGTCTAACAGCCAAGTCTGGAA
AAAATGAGTACCCCCCCCTTTCCAACCCCCCCNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCTTCTCAACC
CCCACCCCCCCGCTAACAGGGTTGCCCCGGAACTCCTCACCTCTCACGGC
CGTGGCACCGCCAAGCGCCTCAAGCGCCTCTCCAAGTCGGAGGTGTGGGG
CCCTGACGTCCGCAACGCTGCCGCTCGTCTCCTCCGGGCGTGGAGAGGGG
TGGTTGACGTGGGCGGCGGCGCGACCGCTTATTCCAAGGCGGCGACAAAG
AGGTCACAAGACGAGGAGCGTGGTGGTGCTGGCAGTGGTGGCGGTGGTGC
TGGTAGCAGTGAAGGTGGAGCCAAGGCTAAAGTTGGGGCTGAACAAATCG
TTGATCGCGTCCGGCCGGCGGCCTCGACAAAGCCGAGGCTAGTGGGAGAG
AAAGAGCAGGAGGAGGAGGAGAATGACGAGCAGCAGGGCATATCAAGCTC
GGGACACAAATCCCCAGCACCGATGCCTGACGCTGGTTCATCCAGTTCCG
ACTTTTCTCCGAAAGTCACCTGCCCTCCGGAGAAGCAACAGAAGGAGCAG
CAGCAGACGCCCAAACGGCCGAGCCTGGTACCCGCAGCTCTTTGGGACCG
GCTTTCGCAAGAGTTCAACGTTTCTCAGCTGAGGGCAATATGGGCGGCCG
CGGCGAGCGCGCGCGAAGCCCACGAGGATCTCGCGGCAGCCGCTAGAGGG
AACGATGGACCGGCGACTCCTGAAACGGCGGTGCTGGCTGAGAGGCGCGC
TCCGGTCAACCACGCGGCGGCGGCGACAGCGAATCGAAGGGAAGGCGGAG
CGCGAGGAGGAGGGTCGAAGGGGGGTGTGGTGCTGTTGCAGGGGCCCCCG
GGCACCGGTAAGACCCGCACCGTTCTCGGGGTCGTGAGCGCCATCCTTGC
CCGCCGCGAGGAGAAAGATTGTGCTAGCGGTGGCGGGCGTAGCGGAGCGA
GCGCTCGAGGTATGGGCACCACGCTGGCGCCTGAGGCGCGCCAGAAGCGG
CCCGGGGTGGCGGGTAGGTGGGTTGCGGCGAAGACGCACCAACGGGTGAG
TGAGGGATCGCTGAAGAGCGGCGGCGTTCCTATTGCGTGCTCGGCGTTCT
GGTTGTGCCAGGCTCTTGGCATGTGCGGTTTCCGTGCAGATCTCGACTTG
CTTGTCGTGTGTAGAAACAGGACAATTGAGGGCCCACTCAGACCTTGTTG
TACATCCGACGTCAACTGTGTCGCTTCCGACCGCCCCCCCGCCGGGACCT
CCCGAGTGTTCAGCATAAGACCCATTCCTCTCTAAGCGCATTATGCTGTA
TTTGTCGTTGTAGGCTTTTTCCTGCTCCCACGGTTGCTGCTGTCGTTGTT
GTTGACGCGTGTGTTCGTGGTTGAAATTGGTACAGCTGTCGCCCTGTTTC
TTGACCCCCGACCCAACTCCGGACTGCGCAGGTACTCGTGTGCGCCCCTA
GCAACGGTGCTGTGGACGAACTCGCCCAACGGCTGGCTCTGGAATCGGGC
GGAGTTTGGGACCAGCGCGGGAATGCTACTGCGCCGAGGGTGGTTCGCCT
GGGAAAGCCCTCGGAAGACGCGGCGGATCGGGTCAAGGCCGTGTCTCTTG
AGTTCATGGTAGAAGAGAGGTGACCGGCTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTAATGTTGTTTGTGTCGTCGTCGTTGGTGGTTGT
AGCTTCGACGACTCAGTGCACAAGCATGACAGAAACGGGTCGGGTCTCAG
GCTCATGGTCGATCTAGTCTGCAAGAGGGAAAGAGAGGAGTCGCCATACG
CCTCGGACGCTGTTTCCCTCCCTTATTTTGTCTCAAATATGAGATAGACC
TTGCTGTCCTGCTGCCTGCCTGTTTCCTTGCCCAATCCAAACCAGCAGAC
AAGTCATTCGACCATCCGCACGCGAAGTAAAGTTCCCCCTCGACGGCGCT
TCCTCATGCGATCCACACCCCCCCGGACGTGTGCATACACACGCACGCTA
ACATCTGGTCTGTGTGTCTGCACTGTTCTTGCCTGAGCACAGTGACGTGT
GCATGCACACGCATGCCAACATCCGGTCTATTTGTCTCCACCGGCCTTGT
GCTGAGGAGAGTGACGCGTGGAGGTACACGCTAATATCTGAAATGTTTGC
GTGTCTGCACCTGCACCGCTCGTGAACCTGAGTAGAATGACTCGTGCATG
AACACAACCCGCTAACATCTGGTCTGTCGGTGTGTCCGCACCGTGTTCTT
GCCCTGAGCAGAGTGAAGCTCCACGCCAAGAGCGCCGAGGCGAGAAATGC
CGAGACGAAGATCAGAGAAACCCACGCTCGTATCGACGAGGCCGGACGTG
CCGTGAGGAGCGGCGACGTCGGCGAGGTTGGCGGTATGGCTGGAATCGGA
AGCGCAGAGAACAGGTGACGTTGGGTACCAGTTGTTGTTTTCGAAGCGAA
AGGATGGGTATCTCGGCAACTAGCACCGATATGTTTAGCCTAGAGAGACA
GGGAAAGAGAGCATTGCGAGTGTCAGGCTAATCTAAAACTGGTGTGCTCA
ATCAATTTTTAGCATGAAGCACGTTTCTTGTGCTTCGCCTTGAGCATATG
TAGTCGGCTGCAAGCAGGGGCCGCACCAACCACCGCTCTCCATGCCCGTT
GGCATCACAACGATCGATCCTCTGCTTCCAATCGAACGGGACGCCGGCAT
CACGGCAGCGCTTTGGCTTCCTTGGCGATACGAGCGGATGGTGAACAATG
CGTGTGCGGTGAAATTAGTTTGTTGGTGTGGGTGCGCGCTCGCGCCTGCC
ACGCTTTGTAATGCGGACGGCGACGCTGCGGGAGCTAGGGCAAACTCCCG
TAGACACCCGCAAGTGGACTGCGAACCCTTCATACCTACATTTCGGCCGG
AGCAATATTGTACCAGCATGTACACCGTTTCAAATATTTCGCCAACTTGC
CGTGGTCGAAGCAATCACACACACACACACACACACACACACACACACAC
ACACACAAACACACACACACACACCGCGTTGTTCCTGTTTTGTTTGGTTT
ACCTCGCGGCTGGCGCCCCCAGACGTCACCAGCTTAACACCCACATCCGG
CGTCTTCGCGGGGAGCTTCTGGTGGCCAAGCAGCGGCGCAGGGATGCCCT
CAGGAGCCTCGACGTCGAGCGCGGCAAGATCAGGCGCTCGCTCGTGAGCA
ACGCCCAGGCAAGGCTTGGTTGAGCGTGGTCGATCGCGTGGACGGCGAGG
GCCGAAACGAACGTTGGAAAGGCCGCAGAGCGGGAGCCCCAGCAGCAGCG
GTAGCAGCACCAGCACCAGCGTGTGATGGCGTAGAAAGCCGTGTGAGGAA
GGCATTTCTGTGTTTGGCGATGTTAGAGGCCACAGAGGGGCAGCAGCACG
GCGGACGATTTGTCGACCGTTTGAAGCAACGGGCTTGCCCATCTCCCTTC
GGCGACATTCTCACGCTTATTTCCATTTTGCCGCTGTCTTTGGCGAGCCG
TTGTAGCCACCCTGCACGCCCCTCGCCCTTGCAGGTTGTGTGCGCCACGC
TCTCCGGATGTGGGTCAGGACCCATGGTGGAGGCGGTAAGCCTTTCAGGC
AAGGGCTTCGACACCGTTATCGTAGACGAGGCTTGCCAGGTACGGAAAAC
GTTTCTCAGCTTGCCGTTAAGAGACAGCGCACAACGCGGACCAACGTTTG
CGCCGGCAGAGATTGGAGCTGTTGTGTCCCGCATTCCTTTCTAGCGCATC
AACAGAGAGCGTATGATACACCTGCTTGTGCACTGCCCTAGATGTAGAGA
AACAACAACGGCACTTACACGCTCAACACCCGAAATCTCTCCATCACCTT
ACGACCTAGCCGCCGAGGAGATACCCCCCCCCCCACCCCCCNNNNNNNNN
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NNNNNNNNCCCCCCCCCCCCCCCCAACGCACAAATGCGGATGCCCGTGGT
TGCTACCTGCCAACTTCTGTCCGTTGTACAGGCCACGGAGCCAAGCACAC
TGATACCCCTGTCTTTAGGTTGTAAACGCCTCATCCTAGTAGGAGACCCT
CGACAGCTTCCGGCGACGGTTATCAGCCAACGGGCGGCCCGG back to topCoding sequence (CDS) from alignment at Scaffold_372:249653..260244- >EsuBft102_9a-0001 ID=EsuBft102_9a-0001|Name=EsuBft102_9a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=1701bp|location=Sequence derived from alignment at Scaffold_372:249653..260244- (Ectocarpus subulatus male Bft15b)
ATGGTGGCGCAGGCGACGTCGGAACCAAGTCTGCAGCCCCTGCCAGAAAC
CGCTCAGAGGGCACCCGGAAACTCGACTACCAGCAACAACCTCTGGGCGA
CGAAATTGGCGCCTCCCTACCTGGTAGACGAAGCCTCGTTTACGGATGCC
TGCAAGCGACTATCGTCGGTGGAAGACTCTGCCCTTCTCGGGAAGTCCGG
TGCCGGAGGCGGGAGTCCGGCTACGGCCGCGGGTTTGGCCGCTGACATAG
CGGGGCCGGAGGAGTCGCTGATGCGATCGCTGGGGTGCCTTGCCAGCTTC
AGGGTTGCCCCGGAACTCCTCACCTCTCACGGCCGTGGCACCGCCAAGCG
CCTCAAGCGCCTCTCCAAGTCGGAGGTGTGGGGCCCTGACGTCCGCAACG
CTGCCGCTCGTCTCCTCCGGGCGTGGAGAGGGGTGGTTGACGTGGGCGGC
GGCGCGACCGCTTATTCCAAGGCGGCGACAAAGAGGTCACAAGACGAGGA
GCGTGGTGGTGCTGGCAGTGGTGGCGGTGGTGCTGGTAGCAGTGAAGGTG
GAGCCAAGGCTAAAGTTGGGGCTGAACAAATCGTTGATCGCGTCCGGCCG
GCGGCCTCGACAAAGCCGAGGCTAGTGGGAGAGAAAGAGCAGGAGGAGGA
GGAGAATGACGAGCAGCAGGGCATATCAAGCTCGGGACACAAATCCCCAG
CACCGATGCCTGACGCTGGTTCATCCAGTTCCGACTTTTCTCCGAAAGTC
ACCTGCCCTCCGGAGAAGCAACAGAAGGAGCAGCAGCAGACGCCCAAACG
GCCGAGCCTGGTACCCGCAGCTCTTTGGGACCGGCTTTCGCAAGAGTTCA
ACGTTTCTCAGCTGAGGGCAATATGGGCGGCCGCGGCGAGCGCGCGCGAA
GCCCACGAGGATCTCGCGGCAGCCGCTAGAGGGAACGATGGACCGGCGAC
TCCTGAAACGGCGGTGCTGGCTGAGAGGCGCGCTCCGGTCAACCACGCGG
CGGCGGCGACAGCGAATCGAAGGGAAGGCGGAGCGCGAGGAGGAGGGTCG
AAGGGGGGTGTGGTGCTGTTGCAGGGGCCCCCGGGCACCGGTAAGACCCG
CACCGTTCTCGGGGTCGTGAGCGCCATCCTTGCCCGCCGCGAGGAGAAAG
ATTGTGCTAGCGGTGGCGGGCGTAGCGGAGCGAGCGCTCGAGGTATGGGC
ACCACGCTGGCGCCTGAGGCGCGCCAGAAGCGGCCCGGGGTGGCGGGTAG
GTGGGTTGCGGCGAAGACGCACCAACGGGTACTCGTGTGCGCCCCTAGCA
ACGGTGCTGTGGACGAACTCGCCCAACGGCTGGCTCTGGAATCGGGCGGA
GTTTGGGACCAGCGCGGGAATGCTACTGCGCCGAGGGTGGTTCGCCTGGG
AAAGCCCTCGGAAGACGCGGCGGATCGGGTCAAGGCCGTGTCTCTTGAGT
TCATGGTAGAAGAGAGAGTGAAGCTCCACGCCAAGAGCGCCGAGGCGAGA
AATGCCGAGACGAAGATCAGAGAAACCCACGCTCGTATCGACGAGGCCGG
ACGTGCCGTGAGGAGCGGCGACGTCGGCGAGGTTGGCGGTATGGCTGGAA
TCGGAAGCGCAGAGAACAGGGATGCCCTCAGGAGCCTCGACGTCGAGCGC
GGCAAGATCAGGCGCTCGCTCGTGAGCAACGCCCAGGCAAGGCTTGGTTG
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