Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 28377.ENSACAP00000022069 |
| ProteomeId | EsuBft102_11 |
| Owner | apollo_admin@sb-roscoff.fr |
| Nb exon | 1 |
| Max annot lvl | 33208|Metazoa |
| Length | 148 |
| Evalue | 7.97e-10 |
| EggNOG OGs | KOG1075@1|root,KOG1075@2759|Eukaryota,3A35Z@33154|Opisthokonta,3BQYF@33208|Metazoa,3D7GC@33213|Bilateria,48EZY@7711|Chordata,49BMJ@7742|Vertebrata |
| Date last modified | 2016-06-14 |
| Date creation | 2016-06-14 |
| Description | Ribonuclease H protein |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >EsuBft102_11a-0001 ID=EsuBft102_11a-0001|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1487bp|location=Sequence derived from alignment at Scaffold_372:222387..223873- (Ectocarpus subulatus male Bft15b)|Notes=Excludes all bases but those of type(s): exon.
GACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCCC
AGCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGA
CGGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAG
TGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCCAACAGCGGAG
CACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTTACACGGTGCAT
CGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGG
CCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAA
CGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAGCCGCCT
CCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGG
GCGGGCAGGAGNGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGC
AGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGAAAGCAGAAGCA
GAGAGTACGACCATCTCAGGACCGAAGAGAAAGGGACCCGGGGAAGCGGC
GGTGGGGGGGAAGAAACGGCGGCTGGGCACTGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGTCGATGTTGTTGC
GCCCTGTTACCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTT
GTATTGCCTTCGGCCTCTGTGCTGTGTTTTTTTTTTCATGACCTCCCTGC
CTTCTCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTT
TTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGC
TCCGTTACTCCCATGCCCTGGTGCGTGGTGCCTGGTGCTGGTACGTTACC
CTTTGATTTTTCTTGTAGGCGGGTGTGTGAAGCGTCCTCCTTTATTTTTG
TTTTGTTTTATTTTGATCGGTTTCCTAGGGCTCTTTTCTCGAACGGTCGG
TGCGATACCTGTTATTTCTTTCTGTCATTTTTGTTTTCTTTTTCCGAGTG
GTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCT
TCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTT
CTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTTCTT
TTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGT
CGTATGTGCTTCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCC
TATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTT
TTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTT
CCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTT back to topprotein sequence of EsuBft102_11a-0001 >EsuBft102_11 ID=EsuBft102_11|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=polypeptide|length=130bp
MYDGRRANRQLKIRLLQAEVVETLLYGCASWSPTAEHYTKLNETHRQFLT
RCIGWSKRKRSDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMED
SRLPKRMLLGAMAGGVGYRGGQEXTGRHGS back to topmRNA from alignment at Scaffold_372:222387..223873- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >EsuBft102_11a-0001 ID=EsuBft102_11a-0001|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=mRNA|length=1487bp|location=Sequence derived from alignment at Scaffold_372:222387..223873- (Ectocarpus subulatus male Bft15b)
GACGTACCATCTCCGCGGACGGGAAGGCCGACCGGGAGATCACGAGCCCC
AGCTGCCGAGCGTGGAAGTGCTACCGCCGGAACAGTGCTTCGATGTACGA
CGGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCAGGCTGAAG
TGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCCAACAGCGGAG
CACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTTACACGGTGCAT
CGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTATGCCCAGG
CCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCGTGCGCAAA
CGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGACAGCCGCCT
CCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGGATACCGGG
GCGGGCAGGAGNGGACGGGGCGGCATGGTTCATGAGGAAATGGCACAGGC
AGGAGGCGGAAGCGTCCGCGAAGCGCCAGCGCGCGAGGAAAGCAGAAGCA
GAGAGTACGACCATCTCAGGACCGAAGAGAAAGGGACCCGGGGAAGCGGC
GGTGGGGGGGAAGAAACGGCGGCTGGGCACTGCTGTAGAAGCGAGTAGGG
CGGCCGAGGCAGCACTTGTGGCGAACTATGTACCCGGTCGATGTTGTTGC
GCCCTGTTACCCTCCCTGCTGTATGCTATACTCCTTTATGTATGTCCTTT
GTATTGCCTTCGGCCTCTGTGCTGTGTTTTTTTTTTCATGACCTCCCTGC
CTTCTCTGCTGTGTTGGGTACCTTGATCTCGCTTTGCTGTTGCCTTTGTT
TTTTGTACGTCTGGCTGTCTGCCCATCTGCCGCCTCTTTGCCCTGTTTGC
TCCGTTACTCCCATGCCCTGGTGCGTGGTGCCTGGTGCTGGTACGTTACC
CTTTGATTTTTCTTGTAGGCGGGTGTGTGAAGCGTCCTCCTTTATTTTTG
TTTTGTTTTATTTTGATCGGTTTCCTAGGGCTCTTTTCTCGAACGGTCGG
TGCGATACCTGTTATTTCTTTCTGTCATTTTTGTTTTCTTTTTCCGAGTG
GTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCT
TCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTT
CTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTTCTT
TTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTTCCCGCGGCGT
CGTATGTGCTTCTATCATTTTTGTTTTCTTTTTCCGAGTGGTTTGTACCC
TATTTTTGTTCTTTCGTTTTCCCGCGGCGTCGTATGTGCTTCTATCATTT
TTGTTTTCTTTTTCCGAGTGGTTTGTACCCTATTTTTGTTCTTTCGTTTT
CCCGCGGCGTCGTATGTGCTTCTATCATTTTTGTTTT back to topCoding sequence (CDS) from alignment at Scaffold_372:222387..223873- >EsuBft102_11a-0001 ID=EsuBft102_11a-0001|Name=EsuBft102_11a-0001|organism=Ectocarpus subulatus male Bft15b|type=CDS|length=393bp|location=Sequence derived from alignment at Scaffold_372:222387..223873- (Ectocarpus subulatus male Bft15b)
ATGTACGACGGGCGACGGGCCAACCGCCAGCTCAAGATCCGGCTACTCCA
GGCTGAAGTGGTGGAGACTCTCCTGTATGGGTGCGCCTCGTGGAGCCCAA
CAGCGGAGCACTACACAAAGCTCAATGAGACCCACCGCCAGTTCCTTACA
CGGTGCATCGGCTGGAGCAAGCGGAAACGCTCAGACCGCCCCCTGTCCTA
TGCCCAGGCCCTCATCCAGGCAGGCTGCGAGGAAACCATCGAGGCCACCG
TGCGCAAACGGAGACTGTGTTTCGCGGGCTTTGTTATGCGCATGGAGGAC
AGCCGCCTCCCCAAGCGCATGCTGTTAGGAGCGATGGCGGGGGGCGTGGG
ATACCGGGGCGGGCAGGAGNGGACGGGGCGGCATGGTTCATGA back to top
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